Ggra5013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5013.t1
Unique NameGgra5013.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:49301..50109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog861299.J421_6059
Max annot lvl142182|Gemmatimonadetes
KEGG rclassRC00002
KEGG koko:K06133
KEGG ReactionR01625
KEGG Pathwayko00770,map00770
Evalue5.28e-21
EggNOG OGsCOG2091@1|root,COG2091@2|Bacteria,1ZV9N@142182|Gemmatimonadetes
Descriptionlysine biosynthetic process via aminoadipic acid
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5013Ggra5013Gracilaria gracilis GNS1m malegenetig00000069_pilon 49301..50109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5013.t1Ggra5013.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 49301..50109 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5013.t1.stop1Ggra5013.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 49301..49303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5013.t1.CDS1Ggra5013.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 49301..49906 -
Ggra5013.t1.CDS2Ggra5013.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 49981..50109 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5013.t1.exon1Ggra5013.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 49301..49906 -
Ggra5013.t1.exon2Ggra5013.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 49981..50109 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5013.t1.intron1Ggra5013.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 49907..49980 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5013.t1.start1Ggra5013.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 50107..50109 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5013.t1 ID=Ggra5013.t1|Name=Ggra5013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MRSVRNRIDVWKADLCDVRLRRMWAEVLSEEEQARANKMANIASRAQFQT
SRAFVRDVLARYLRNTSARELKFERGAHGKPHLSGEAQLKFNVAHTGNSG
ILCVSHDQDVGIDIERSDRHVRQIHKLMRRSLHDDEIRQVLSHGKDEEQL
RTQLLRAWTRKEAFVKCTGEGISRGLRSFAVDERSGLVHDHKQRRAARQW
RHRVTDVRVDDAHVAALCYALAPRARDPHVRLLQWSRRAVNRNA*
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spliced messenger RNA

>Ggra5013.t1 ID=Ggra5013.t1|Name=Ggra5013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000069_pilon:49301..50109- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCGTGCGAAACAGAATCGACGTCTGGAAAGCAGATCTATGTGA
TGTGAGATTGAGACGCATGTGGGCTGAGGTGCTGAGCGAGGAAGAACAAG
CTCGAGCGAACAAGATGGCAAACATTGCGAGTCGCGCGCAGTTTCAAACA
AGCAGAGCATTCGTACGCGACGTGCTGGCGCGCTATCTGCGCAACACAAG
CGCGCGCGAGCTGAAGTTCGAGCGCGGCGCGCACGGCAAACCGCATCTAT
CAGGGGAGGCGCAGCTCAAGTTCAACGTCGCGCACACGGGCAACAGCGGC
ATCCTGTGCGTCTCGCACGACCAAGACGTGGGCATCGACATCGAAAGGTC
GGACCGTCACGTACGGCAGATACACAAGCTGATGCGCAGAAGTCTGCACG
ACGACGAGATACGGCAAGTGCTGAGCCACGGCAAGGACGAAGAGCAGCTA
CGGACGCAGTTGCTGCGCGCGTGGACGCGCAAGGAGGCTTTCGTCAAATG
CACGGGCGAAGGCATCTCACGCGGGCTGCGCTCGTTCGCGGTGGACGAAC
GCAGCGGGCTGGTGCACGACCACAAGCAGCGGCGGGCGGCGCGCCAGTGG
CGCCACCGAGTCACCGACGTGCGCGTCGATGACGCGCACGTAGCGGCGCT
CTGCTACGCGCTGGCGCCCAGAGCGCGCGATCCGCACGTGCGCCTGCTGC
AATGGTCAAGGCGCGCCGTGAATCGCAACGCGTGA
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protein sequence of Ggra5013.t1

>Ggra5013.t1 ID=Ggra5013.t1|Name=Ggra5013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MRSVRNRIDVWKADLCDVRLRRMWAEVLSEEEQARANKMANIASRAQFQT
SRAFVRDVLARYLRNTSARELKFERGAHGKPHLSGEAQLKFNVAHTGNSG
ILCVSHDQDVGIDIERSDRHVRQIHKLMRRSLHDDEIRQVLSHGKDEEQL
RTQLLRAWTRKEAFVKCTGEGISRGLRSFAVDERSGLVHDHKQRRAARQW
RHRVTDVRVDDAHVAALCYALAPRARDPHVRLLQWSRRAVNRNA*
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mRNA from alignment at tig00000069_pilon:49301..50109-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5013.t1 ID=Ggra5013.t1|Name=Ggra5013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=809bp|location=Sequence derived from alignment at tig00000069_pilon:49301..50109- (Gracilaria gracilis GNS1m male)
ATGCGCAGCGTGCGAAACAGAATCGACGTCTGGAAAGCAGATCTATGTGA
TGTGAGATTGAGACGCATGTGGGCTGAGGTGCTGAGCGAGGAAGAACAAG
CTCGAGCGAACAAGATGGCAAACATTGCGGTACGTTACACCAAACCATAA
GGGCGCAAGTGGACGGCATGAGTCTGACGAACAAACAATATGGCTGTGTA
CAGAGTCGCGCGCAGTTTCAAACAAGCAGAGCATTCGTACGCGACGTGCT
GGCGCGCTATCTGCGCAACACAAGCGCGCGCGAGCTGAAGTTCGAGCGCG
GCGCGCACGGCAAACCGCATCTATCAGGGGAGGCGCAGCTCAAGTTCAAC
GTCGCGCACACGGGCAACAGCGGCATCCTGTGCGTCTCGCACGACCAAGA
CGTGGGCATCGACATCGAAAGGTCGGACCGTCACGTACGGCAGATACACA
AGCTGATGCGCAGAAGTCTGCACGACGACGAGATACGGCAAGTGCTGAGC
CACGGCAAGGACGAAGAGCAGCTACGGACGCAGTTGCTGCGCGCGTGGAC
GCGCAAGGAGGCTTTCGTCAAATGCACGGGCGAAGGCATCTCACGCGGGC
TGCGCTCGTTCGCGGTGGACGAACGCAGCGGGCTGGTGCACGACCACAAG
CAGCGGCGGGCGGCGCGCCAGTGGCGCCACCGAGTCACCGACGTGCGCGT
CGATGACGCGCACGTAGCGGCGCTCTGCTACGCGCTGGCGCCCAGAGCGC
GCGATCCGCACGTGCGCCTGCTGCAATGGTCAAGGCGCGCCGTGAATCGC
AACGCGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:49301..50109-

>Ggra5013.t1 ID=Ggra5013.t1|Name=Ggra5013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000069_pilon:49301..50109- (Gracilaria gracilis GNS1m male)
ATGCGCAGCGTGCGAAACAGAATCGACGTCTGGAAAGCAGATCTATGTGA
TGTGAGATTGAGACGCATGTGGGCTGAGGTGCTGAGCGAGGAAGAACAAG
CTCGAGCGAACAAGATGGCAAACATTGCGAGTCGCGCGCAGTTTCAAACA
AGCAGAGCATTCGTACGCGACGTGCTGGCGCGCTATCTGCGCAACACAAG
CGCGCGCGAGCTGAAGTTCGAGCGCGGCGCGCACGGCAAACCGCATCTAT
CAGGGGAGGCGCAGCTCAAGTTCAACGTCGCGCACACGGGCAACAGCGGC
ATCCTGTGCGTCTCGCACGACCAAGACGTGGGCATCGACATCGAAAGGTC
GGACCGTCACGTACGGCAGATACACAAGCTGATGCGCAGAAGTCTGCACG
ACGACGAGATACGGCAAGTGCTGAGCCACGGCAAGGACGAAGAGCAGCTA
CGGACGCAGTTGCTGCGCGCGTGGACGCGCAAGGAGGCTTTCGTCAAATG
CACGGGCGAAGGCATCTCACGCGGGCTGCGCTCGTTCGCGGTGGACGAAC
GCAGCGGGCTGGTGCACGACCACAAGCAGCGGCGGGCGGCGCGCCAGTGG
CGCCACCGAGTCACCGACGTGCGCGTCGATGACGCGCACGTAGCGGCGCT
CTGCTACGCGCTGGCGCCCAGAGCGCGCGATCCGCACGTGCGCCTGCTGC
AATGGTCAAGGCGCGCCGTGAATCGCAACGCGTGA
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