Ggra5011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5011.t1
Unique NameGgra5011.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:41204..42430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog755731.Clo1100_1766
Preferred namernc
PFAMsRibonucleas_3_3,dsrm
Max annot lvl186801|Clostridia
KEGG koko:K03685
KEGG Pathwayko03008,ko05205,map03008,map05205
Evalue1.57e-25
EggNOG OGsCOG0571@1|root,COG0571@2|Bacteria,1TPGC@1239|Firmicutes,249QD@186801|Clostridia,36FEP@31979|Clostridiaceae
EC3.1.26.3
DescriptionDigests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5011Ggra5011Gracilaria gracilis GNS1m malegenetig00000069_pilon 41204..42430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5011.t1Ggra5011.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 41204..42430 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5011.t1.stop1Ggra5011.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 41204..41206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5011.t1.CDS1Ggra5011.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 41204..41695 -
Ggra5011.t1.CDS2Ggra5011.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 41799..41880 -
Ggra5011.t1.CDS3Ggra5011.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 41964..42430 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5011.t1.exon1Ggra5011.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 41204..41695 -
Ggra5011.t1.exon2Ggra5011.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 41799..41880 -
Ggra5011.t1.exon3Ggra5011.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 41964..42430 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5011.t1.intron1Ggra5011.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 41696..41798 -
Ggra5011.t1.intron2Ggra5011.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 41881..41963 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5011.t1.start1Ggra5011.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 42428..42430 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5011.t1 ID=Ggra5011.t1|Name=Ggra5011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MRLQAFASCSRLFWYGVHGARASAPLSSNVTFLYARRLTVQAKNRECGPY
VIAESQLDKVEAILQHKFVNRALLAEALTHRSVVNPSSSAKAFYEKAGKQ
IQIRRNNERLELLGDRVFGLVVVQALFNRHPNAAEGKLSPISQTMVSRKS
AKEHSIALGLNRFLLESEHLRGKDGSRYGDSFEALLGALFMDGGYDAAFE
FYSSRIMPQWDKRLREAPVIDCQKRFLQEYLVQNGLPSPSMGTQVSYVTT
HYEQEERIFTRAVKLFGRQVSEGKGATVQSADQAAALLLLTRLKNLPGGR
ATCFLIRLARQAADEYSLTKLQQTRSLQVASSKSSECADLVEPKST*
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spliced messenger RNA

>Ggra5011.t1 ID=Ggra5011.t1|Name=Ggra5011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:41204..42430- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCTTCAGGCGTTTGCCTCGTGCTCGAGACTGTTCTGGTATGGTGT
CCATGGAGCGCGCGCTTCAGCCCCCTTATCTTCAAATGTCACCTTCCTCT
ACGCGCGGCGTCTCACTGTCCAGGCAAAGAATCGCGAGTGTGGTCCATAT
GTAATAGCTGAATCGCAATTGGACAAAGTCGAAGCAATTCTTCAGCACAA
GTTCGTGAACCGCGCTTTGTTGGCGGAGGCTCTAACTCATCGTTCTGTTG
TAAACCCTTCCTCGTCCGCCAAGGCTTTTTACGAGAAAGCAGGCAAGCAA
ATTCAGATTCGGCGCAATAATGAGCGCCTGGAACTGCTCGGTGACCGTGT
GTTTGGCCTCGTTGTTGTTCAAGCGTTGTTCAACCGACATCCAAACGCAG
CAGAAGGGAAATTGAGCCCCATTTCACAAACTATGGTATCCCGGAAGTCA
GCGAAAGAGCATAGCATCGCCCTCGGACTGAATAGATTTCTATTGGAGAG
TGAACACTTGCGTGGGAAAGACGGTTCACGCTACGGTGATTCTTTTGAGG
CCCTGCTTGGAGCATTGTTTATGGATGGAGGTTATGACGCCGCATTTGAG
TTTTACTCATCCCGAATAATGCCTCAGTGGGATAAGCGGCTACGTGAAGC
TCCTGTGATTGATTGTCAGAAACGATTTCTGCAGGAATATCTAGTTCAGA
ACGGTCTTCCCTCTCCTAGCATGGGCACTCAGGTCTCTTACGTTACCACT
CATTATGAGCAAGAGGAGAGAATCTTCACCAGAGCCGTCAAGCTATTCGG
ACGACAAGTAAGCGAGGGGAAAGGTGCCACTGTGCAATCTGCAGATCAAG
CTGCTGCATTGCTTCTTCTCACCCGTCTCAAAAACCTGCCGGGAGGAAGG
GCGACATGTTTTCTCATTAGACTCGCCCGTCAAGCAGCAGATGAGTACTC
TTTGACTAAACTACAGCAAACCAGATCGCTTCAAGTTGCCTCAAGCAAGA
GCAGTGAATGTGCAGATCTTGTTGAGCCGAAGTCGACTTAA
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protein sequence of Ggra5011.t1

>Ggra5011.t1 ID=Ggra5011.t1|Name=Ggra5011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MRLQAFASCSRLFWYGVHGARASAPLSSNVTFLYARRLTVQAKNRECGPY
VIAESQLDKVEAILQHKFVNRALLAEALTHRSVVNPSSSAKAFYEKAGKQ
IQIRRNNERLELLGDRVFGLVVVQALFNRHPNAAEGKLSPISQTMVSRKS
AKEHSIALGLNRFLLESEHLRGKDGSRYGDSFEALLGALFMDGGYDAAFE
FYSSRIMPQWDKRLREAPVIDCQKRFLQEYLVQNGLPSPSMGTQVSYVTT
HYEQEERIFTRAVKLFGRQVSEGKGATVQSADQAAALLLLTRLKNLPGGR
ATCFLIRLARQAADEYSLTKLQQTRSLQVASSKSSECADLVEPKST*
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mRNA from alignment at tig00000069_pilon:41204..42430-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5011.t1 ID=Ggra5011.t1|Name=Ggra5011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000069_pilon:41204..42430- (Gracilaria gracilis GNS1m male)
ATGCGGCTTCAGGCGTTTGCCTCGTGCTCGAGACTGTTCTGGTATGGTGT
CCATGGAGCGCGCGCTTCAGCCCCCTTATCTTCAAATGTCACCTTCCTCT
ACGCGCGGCGTCTCACTGTCCAGGCAAAGAATCGCGAGTGTGGTCCATAT
GTAATAGCTGAATCGCAATTGGACAAAGTCGAAGCAATTCTTCAGCACAA
GTTCGTGAACCGCGCTTTGTTGGCGGAGGCTCTAACTCATCGTTCTGTTG
TAAACCCTTCCTCGTCCGCCAAGGCTTTTTACGAGAAAGCAGGCAAGCAA
ATTCAGATTCGGCGCAATAATGAGCGCCTGGAACTGCTCGGTGACCGTGT
GTTTGGCCTCGTTGTTGTTCAAGCGTTGTTCAACCGACATCCAAACGCAG
CAGAAGGGAAATTGAGCCCCATTTCACAAACTATGGTATCCCGGAAGTCA
GCGAAAGAGCATAGCATGTAGGTTGTACTTTCTTGTGTTTCGCATGCTGT
TGGCGTATGATCTTGCGTTGCAGTGGTACTTACATTCCTCACAATTTTAG
CGCCCTCGGACTGAATAGATTTCTATTGGAGAGTGAACACTTGCGTGGGA
AAGACGGTTCACGCTACGGTGATTCTTTTGAGGTTTGTTGAAAGGAACCC
TTCTATTTTTCGTCACAGCCCAACTTCATTACTGACTAGAGCTTCTAACA
TTCCATTTTCGCAATCGAATACAATGTGCCGAAAGGCCCTGCTTGGAGCA
TTGTTTATGGATGGAGGTTATGACGCCGCATTTGAGTTTTACTCATCCCG
AATAATGCCTCAGTGGGATAAGCGGCTACGTGAAGCTCCTGTGATTGATT
GTCAGAAACGATTTCTGCAGGAATATCTAGTTCAGAACGGTCTTCCCTCT
CCTAGCATGGGCACTCAGGTCTCTTACGTTACCACTCATTATGAGCAAGA
GGAGAGAATCTTCACCAGAGCCGTCAAGCTATTCGGACGACAAGTAAGCG
AGGGGAAAGGTGCCACTGTGCAATCTGCAGATCAAGCTGCTGCATTGCTT
CTTCTCACCCGTCTCAAAAACCTGCCGGGAGGAAGGGCGACATGTTTTCT
CATTAGACTCGCCCGTCAAGCAGCAGATGAGTACTCTTTGACTAAACTAC
AGCAAACCAGATCGCTTCAAGTTGCCTCAAGCAAGAGCAGTGAATGTGCA
GATCTTGTTGAGCCGAAGTCGACTTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:41204..42430-

>Ggra5011.t1 ID=Ggra5011.t1|Name=Ggra5011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:41204..42430- (Gracilaria gracilis GNS1m male)
ATGCGGCTTCAGGCGTTTGCCTCGTGCTCGAGACTGTTCTGGTATGGTGT
CCATGGAGCGCGCGCTTCAGCCCCCTTATCTTCAAATGTCACCTTCCTCT
ACGCGCGGCGTCTCACTGTCCAGGCAAAGAATCGCGAGTGTGGTCCATAT
GTAATAGCTGAATCGCAATTGGACAAAGTCGAAGCAATTCTTCAGCACAA
GTTCGTGAACCGCGCTTTGTTGGCGGAGGCTCTAACTCATCGTTCTGTTG
TAAACCCTTCCTCGTCCGCCAAGGCTTTTTACGAGAAAGCAGGCAAGCAA
ATTCAGATTCGGCGCAATAATGAGCGCCTGGAACTGCTCGGTGACCGTGT
GTTTGGCCTCGTTGTTGTTCAAGCGTTGTTCAACCGACATCCAAACGCAG
CAGAAGGGAAATTGAGCCCCATTTCACAAACTATGGTATCCCGGAAGTCA
GCGAAAGAGCATAGCATCGCCCTCGGACTGAATAGATTTCTATTGGAGAG
TGAACACTTGCGTGGGAAAGACGGTTCACGCTACGGTGATTCTTTTGAGG
CCCTGCTTGGAGCATTGTTTATGGATGGAGGTTATGACGCCGCATTTGAG
TTTTACTCATCCCGAATAATGCCTCAGTGGGATAAGCGGCTACGTGAAGC
TCCTGTGATTGATTGTCAGAAACGATTTCTGCAGGAATATCTAGTTCAGA
ACGGTCTTCCCTCTCCTAGCATGGGCACTCAGGTCTCTTACGTTACCACT
CATTATGAGCAAGAGGAGAGAATCTTCACCAGAGCCGTCAAGCTATTCGG
ACGACAAGTAAGCGAGGGGAAAGGTGCCACTGTGCAATCTGCAGATCAAG
CTGCTGCATTGCTTCTTCTCACCCGTCTCAAAAACCTGCCGGGAGGAAGG
GCGACATGTTTTCTCATTAGACTCGCCCGTCAAGCAGCAGATGAGTACTC
TTTGACTAAACTACAGCAAACCAGATCGCTTCAAGTTGCCTCAAGCAAGA
GCAGTGAATGTGCAGATCTTGTTGAGCCGAAGTCGACTTAA
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