Ggra5.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5.t1
Unique NameGgra5.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000223_piloncontigtig00000223_pilon:16041..16695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5Ggra5Gracilaria gracilis GNS1m malegenetig00000223_pilon 16041..16695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5.t1Ggra5.t1Gracilaria gracilis GNS1m malepolypeptidetig00000223_pilon 16041..16695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5.t1.start1Ggra5.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000223_pilon 16041..16043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5.t1.CDS1Ggra5.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000223_pilon 16041..16554 +
Ggra5.t1.CDS2Ggra5.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000223_pilon 16640..16695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5.t1.exon1Ggra5.t1.exon1Gracilaria gracilis GNS1m maleexontig00000223_pilon 16041..16554 +
Ggra5.t1.exon2Ggra5.t1.exon2Gracilaria gracilis GNS1m maleexontig00000223_pilon 16640..16695 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5.t1.intron1Ggra5.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000223_pilon 16555..16639 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5.t1.stop1Ggra5.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000223_pilon 16693..16695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5.t1 ID=Ggra5.t1|Name=Ggra5.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MPISPRKDGDSSVFGSLSLETVVSTGVRIDYESSDSEIATSTVRPDVFPL
QNISQDRSAPITISCNRDSCVSEKQEEFVCNIIKPDNDENLLLLFSTSRV
GSNAVVDFRAMIPKSEETPIAVSWKAVRNFAFPTKCTRVTPASNVAPPPE
VGTPPAAVEEAEQLPESGGIIGAEDLQVSRVVEGVHSLD*
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spliced messenger RNA

>Ggra5.t1 ID=Ggra5.t1|Name=Ggra5.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000223_pilon:16041..16695+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAATCTCTCCCAGAAAGGATGGTGATAGCTCTGTATTTGGTTCTCT
CTCTTTGGAAACTGTTGTCTCTACTGGAGTGCGGATCGATTATGAAAGTA
GCGATTCAGAAATTGCGACCTCCACTGTCAGGCCCGATGTGTTTCCGCTC
CAAAATATATCGCAAGACCGTTCTGCTCCAATTACAATATCGTGCAATCG
AGATTCATGTGTTTCCGAGAAGCAGGAAGAATTCGTGTGCAACATTATCA
AACCAGACAACGACGAGAACTTGCTTCTGCTGTTTTCAACGAGCAGAGTG
GGCTCCAATGCAGTGGTGGATTTCCGGGCCATGATTCCCAAGTCTGAAGA
AACTCCAATCGCGGTTTCATGGAAAGCAGTTCGGAACTTTGCTTTCCCGA
CCAAATGCACGCGTGTTACACCCGCTTCCAACGTTGCACCTCCACCAGAG
GTCGGAACTCCACCTGCAGCTGTAGAAGAAGCGGAGCAGCTGCCTGAGTC
AGGCGGGATCATTGGCGCAGAAGACCTCCAAGTTTCTCGTGTTGTAGAGG
GTGTTCATTCTCTTGACTAA
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protein sequence of Ggra5.t1

>Ggra5.t1 ID=Ggra5.t1|Name=Ggra5.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MPISPRKDGDSSVFGSLSLETVVSTGVRIDYESSDSEIATSTVRPDVFPL
QNISQDRSAPITISCNRDSCVSEKQEEFVCNIIKPDNDENLLLLFSTSRV
GSNAVVDFRAMIPKSEETPIAVSWKAVRNFAFPTKCTRVTPASNVAPPPE
VGTPPAAVEEAEQLPESGGIIGAEDLQVSRVVEGVHSLD*
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mRNA from alignment at tig00000223_pilon:16041..16695+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5.t1 ID=Ggra5.t1|Name=Ggra5.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp|location=Sequence derived from alignment at tig00000223_pilon:16041..16695+ (Gracilaria gracilis GNS1m male)
ATGCCAATCTCTCCCAGAAAGGATGGTGATAGCTCTGTATTTGGTTCTCT
CTCTTTGGAAACTGTTGTCTCTACTGGAGTGCGGATCGATTATGAAAGTA
GCGATTCAGAAATTGCGACCTCCACTGTCAGGCCCGATGTGTTTCCGCTC
CAAAATATATCGCAAGACCGTTCTGCTCCAATTACAATATCGTGCAATCG
AGATTCATGTGTTTCCGAGAAGCAGGAAGAATTCGTGTGCAACATTATCA
AACCAGACAACGACGAGAACTTGCTTCTGCTGTTTTCAACGAGCAGAGTG
GGCTCCAATGCAGTGGTGGATTTCCGGGCCATGATTCCCAAGTCTGAAGA
AACTCCAATCGCGGTTTCATGGAAAGCAGTTCGGAACTTTGCTTTCCCGA
CCAAATGCACGCGTGTTACACCCGCTTCCAACGTTGCACCTCCACCAGAG
GTCGGAACTCCACCTGCAGCTGTAGAAGAAGCGGAGCAGCTGCCTGAGTC
AGGCGGGATCATTGGTGCGGGTCCTATTCAAAGCCAAGGAGCAGCTACTG
GGATTGGTCGCCCGTTTGGGAGCTGTTGCAGTGCTTGCTCATTTCGCAGG
CGCAGAAGACCTCCAAGTTTCTCGTGTTGTAGAGGGTGTTCATTCTCTTG
ACTAA
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Coding sequence (CDS) from alignment at tig00000223_pilon:16041..16695+

>Ggra5.t1 ID=Ggra5.t1|Name=Ggra5.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000223_pilon:16041..16695+ (Gracilaria gracilis GNS1m male)
ATGCCAATCTCTCCCAGAAAGGATGGTGATAGCTCTGTATTTGGTTCTCT
CTCTTTGGAAACTGTTGTCTCTACTGGAGTGCGGATCGATTATGAAAGTA
GCGATTCAGAAATTGCGACCTCCACTGTCAGGCCCGATGTGTTTCCGCTC
CAAAATATATCGCAAGACCGTTCTGCTCCAATTACAATATCGTGCAATCG
AGATTCATGTGTTTCCGAGAAGCAGGAAGAATTCGTGTGCAACATTATCA
AACCAGACAACGACGAGAACTTGCTTCTGCTGTTTTCAACGAGCAGAGTG
GGCTCCAATGCAGTGGTGGATTTCCGGGCCATGATTCCCAAGTCTGAAGA
AACTCCAATCGCGGTTTCATGGAAAGCAGTTCGGAACTTTGCTTTCCCGA
CCAAATGCACGCGTGTTACACCCGCTTCCAACGTTGCACCTCCACCAGAG
GTCGGAACTCCACCTGCAGCTGTAGAAGAAGCGGAGCAGCTGCCTGAGTC
AGGCGGGATCATTGGCGCAGAAGACCTCCAAGTTTCTCGTGTTGTAGAGG
GTGTTCATTCTCTTGACTAA
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