Ggra4994.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4994.t1
Unique Name	Ggra4994.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	616

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000014_pilon	contig	tig00000014_pilon:258137..259984 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	459495.SPLC1_S260520
Preferred name	cruP
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01004
KEGG ko	ko:K14606
KEGG Reaction	R03824,R05341
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
Evalue	8.78e-118
EggNOG OGs	COG0654@1\|root,COG0654@2\|Bacteria,1G0C3@1117\|Cyanobacteria,1H7EW@1150\|Oscillatoriales
EC	5.5.1.19
Description	FAD dependent oxidoreductase
COG category	CH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4994	Ggra4994	Gracilaria gracilis GNS1m male	gene	tig00000014_pilon 258137..259984 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4994.t1.start1	Ggra4994.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000014_pilon 258137..258139 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4994.t1.CDS1	Ggra4994.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000014_pilon 258137..259984 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4994.t1.exon1	Ggra4994.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000014_pilon 258137..259984 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4994.t1.stop1	Ggra4994.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000014_pilon 259982..259984 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4994.t1	Ggra4994.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000014_pilon 258137..259984 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000014_pilon:258137..259984+
coding sequence from alignment at tig00000014_pilon:258137..259984+

mRNA sequence

>Ggra4994.t1 ID=Ggra4994.t1|Name=Ggra4994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp
MQPLPASHTLPCFSPAVPLARAPPRLLHRRTKSRYTLMSVPTPSPRLRHF
LQSASEGNALQSLQRADTLYERMKSKSTTYSPPHIVRTDSRTVIERGQTL
TYDIIVAGGTLGILHAVALARRGWRVAVVERGPLVGRAQEWNTSRSEMSA
LLKEGVLTPEELESVIVTEVEQPGRIQFATRSNHDEALRVPNVLNVGVAP
DVLLRLARDTFEELGGVVYEFASVKSVVVGDDAALVTLRKQNSQGIKGAL
GAGGTGLPGTDSDEVITLSSRLLIDAMGSFSPIAQQARNGRKPDGVCIVV
GSCMSGPWNDKGALDLIYSSQPINQRRSTQYFWEAFPVQRESDARTTYMF
AYGPCDERRHSLTETLEDYLQELPKYQGIDVNDMKVKRVLFGAFPSFYKS
SPAKVTWDRIIPVGDAAGLQSPISFGGFGCCLRHLTRITNALDDALQLRD
DSLLTRENLQNVLWYSPSLSVTGLFNRAMSVQPGQKTAGPLLDEYGINEV
LWSNMKAMEFLGEKVQLPFLRDVVGARGLLNTILVMAVRRPDLAFNVVFF
LGLKELVGWSRHFFALLGYAAVFPVMELFQRASKRTNILNVKQQFWLDRA
VDGVKYGSGADYEQE*

spliced messenger RNA

>Ggra4994.t1 ID=Ggra4994.t1|Name=Ggra4994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000014_pilon:258137..259984+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCACTTCCGGCTTCTCACACTCTGCCATGTTTCTCGCCGGCTGT
GCCGTTGGCGCGAGCGCCACCGCGTTTGCTGCACCGGCGCACCAAGTCGC
GATACACGCTCATGAGcgtcccgacgccgtcgccgcgtcttcgccACTTT
CTGCAGAGCGCGTCGGAAGGAAACGCTCTCCAATCGTTGCAGCGCGCCGA
CACACTTTACGAGCGAATGAAGAGTAAGTCCACCACATATTCACCGCCGC
ACATCGTGCGCACGGACAGTCGAACCGTCATTGAACGCGGCCAAACCCTC
ACGTACGACATCATCGTCGCGGGCGGCACGCTGGGCATTCTTCACGCTGT
GGCGCtcgcgagacgcgggtggcgcgtcgctgtcgtggagcgaggcccgc
tggtcgGGCGCGCACAGGAGTGGAACACGTCGCGTTCGGAGATGAGTGCG
CTTCTGAAGGAGGGCGTTTTGACTCCTGAAGAGTTGGAAAGCGTTATTGT
CACCGAAGTTGAACAGCCGGGTCGGATACAGTTTGCCACTCGCTCGAATC
ATGACGAAGCTCTTCGCGTCCCGAATGTACTCAACGTGGGCGTGGCCCCT
GACGTGCTTCTTCGCCTTGCTAGAGACACTTTTGAGGAGCTTGGAGGTGT
TGTTTATGAGTTTGCTAGCGTTAAGAGCGTTGTTGTTGGTGATGATGCTG
CGCTTGTTACGCTTCGCAAGCAGAATTCTCAGGGAATCAAAGGAGCGCTT
GGTGCTGGTGGCACGGGGTTGCCTGGAACTGATTCAGATGAAGTTATCAC
CTTGAGTTCTAGATTGCTTATTGATGCCATGGGTTCGTTCTCCCCCATCG
CTCAACAGGCCAGGAATGGAAGGAAGCCTGACGGTGTTTGTATTGTAGTT
GGAAGCTGCATGAGCGGACCTTGGAACGACAAAGGTGCCTTGGATTTGAT
CTATTCTTCTCAACCCATTAATCAACGGAGAAGCACGCAATACTTCTGGG
AAGCTTTTCCTGTACAGCGAGAATCCGATGCTCGAACAACCTACATGTTC
GCGTACGGTCCTTGTGATGAACGACGCCACAGCCTTACGGAAACTCTGGA
AGACTATCTTCAGGAACTTCCAAAGTATCAGGGAATTGATGTGAACGACA
TGAAAGTGAAGAGGGTTTTGTTTGGTGCTTTTCCATCCTTTTACAAGAGC
AGTCCTGCCAAAGTCACGTGGGATCGCATCATCCCTGTAGGTGATGCTGC
CGGGTTGCAATCACCTATCAGCTTTGGGGGGTTTGGATGTTGTCTGAGAC
ATCTTACAAGAATTACAAATGCCCTTGATGATGCTCTTCAGCTTAGAGAT
GACTCATTGCTCACTCGTGAGAATCTGCAAAATGTTTTGTGGTATTCGCC
TTCTTTATCAGTAACGGGGTTGTTCAATCGTGCTATGTCAGTACAGCCGG
GACAGAAAACTGCCGGACCACTACTCGATGAGTACGGTATAAACGAAGTG
TTATGGTCGAACATGAAAGCAATGGAGTTTCTCGGTGAGAAGGTGCAGCT
GCCGTTTCTCCGCGATGTCGTCGGGGCAAGAGGCTTGTTGAATACTATCC
TGGTTATGGCGGTCAGAAGACCAGACTTGGCGTTTAATGTCGTTTTCTTC
CTAGGTTTGAAAGAGTTGGTAGGATGGAGTCGTCACTTCTTCGCGCTTCT
TGGCTATGCAGCAGTGTTCCCAGTCATGGAGTTGTTCCAACGTGCTTCCA
AGAGGACCAACATTCTCAATGTCAAACAACAGTTTTGGCTCGATCGCGCC
GTGGATGGAGTAAAGTATGGTAGCGGGGCGGATTATGAGCAGGAATAG

protein sequence of Ggra4994.t1

>Ggra4994.t1 ID=Ggra4994.t1|Name=Ggra4994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=616bp
MQPLPASHTLPCFSPAVPLARAPPRLLHRRTKSRYTLMSVPTPSPRLRHF
LQSASEGNALQSLQRADTLYERMKSKSTTYSPPHIVRTDSRTVIERGQTL
TYDIIVAGGTLGILHAVALARRGWRVAVVERGPLVGRAQEWNTSRSEMSA
LLKEGVLTPEELESVIVTEVEQPGRIQFATRSNHDEALRVPNVLNVGVAP
DVLLRLARDTFEELGGVVYEFASVKSVVVGDDAALVTLRKQNSQGIKGAL
GAGGTGLPGTDSDEVITLSSRLLIDAMGSFSPIAQQARNGRKPDGVCIVV
GSCMSGPWNDKGALDLIYSSQPINQRRSTQYFWEAFPVQRESDARTTYMF
AYGPCDERRHSLTETLEDYLQELPKYQGIDVNDMKVKRVLFGAFPSFYKS
SPAKVTWDRIIPVGDAAGLQSPISFGGFGCCLRHLTRITNALDDALQLRD
DSLLTRENLQNVLWYSPSLSVTGLFNRAMSVQPGQKTAGPLLDEYGINEV
LWSNMKAMEFLGEKVQLPFLRDVVGARGLLNTILVMAVRRPDLAFNVVFF
LGLKELVGWSRHFFALLGYAAVFPVMELFQRASKRTNILNVKQQFWLDRA
VDGVKYGSGADYEQE*

mRNA from alignment at tig00000014_pilon:258137..259984+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4994.t1 ID=Ggra4994.t1|Name=Ggra4994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000014_pilon:258137..259984+ (Gracilaria gracilis GNS1m male)
ATGCAGCCACTTCCGGCTTCTCACACTCTGCCATGTTTCTCGCCGGCTGT
GCCGTTGGCGCGAGCGCCACCGCGTTTGCTGCACCGGCGCACCAAGTCGC
GATACACGCTCATGAGcgtcccgacgccgtcgccgcgtcttcgccACTTT
CTGCAGAGCGCGTCGGAAGGAAACGCTCTCCAATCGTTGCAGCGCGCCGA
CACACTTTACGAGCGAATGAAGAGTAAGTCCACCACATATTCACCGCCGC
ACATCGTGCGCACGGACAGTCGAACCGTCATTGAACGCGGCCAAACCCTC
ACGTACGACATCATCGTCGCGGGCGGCACGCTGGGCATTCTTCACGCTGT
GGCGCtcgcgagacgcgggtggcgcgtcgctgtcgtggagcgaggcccgc
tggtcgGGCGCGCACAGGAGTGGAACACGTCGCGTTCGGAGATGAGTGCG
CTTCTGAAGGAGGGCGTTTTGACTCCTGAAGAGTTGGAAAGCGTTATTGT
CACCGAAGTTGAACAGCCGGGTCGGATACAGTTTGCCACTCGCTCGAATC
ATGACGAAGCTCTTCGCGTCCCGAATGTACTCAACGTGGGCGTGGCCCCT
GACGTGCTTCTTCGCCTTGCTAGAGACACTTTTGAGGAGCTTGGAGGTGT
TGTTTATGAGTTTGCTAGCGTTAAGAGCGTTGTTGTTGGTGATGATGCTG
CGCTTGTTACGCTTCGCAAGCAGAATTCTCAGGGAATCAAAGGAGCGCTT
GGTGCTGGTGGCACGGGGTTGCCTGGAACTGATTCAGATGAAGTTATCAC
CTTGAGTTCTAGATTGCTTATTGATGCCATGGGTTCGTTCTCCCCCATCG
CTCAACAGGCCAGGAATGGAAGGAAGCCTGACGGTGTTTGTATTGTAGTT
GGAAGCTGCATGAGCGGACCTTGGAACGACAAAGGTGCCTTGGATTTGAT
CTATTCTTCTCAACCCATTAATCAACGGAGAAGCACGCAATACTTCTGGG
AAGCTTTTCCTGTACAGCGAGAATCCGATGCTCGAACAACCTACATGTTC
GCGTACGGTCCTTGTGATGAACGACGCCACAGCCTTACGGAAACTCTGGA
AGACTATCTTCAGGAACTTCCAAAGTATCAGGGAATTGATGTGAACGACA
TGAAAGTGAAGAGGGTTTTGTTTGGTGCTTTTCCATCCTTTTACAAGAGC
AGTCCTGCCAAAGTCACGTGGGATCGCATCATCCCTGTAGGTGATGCTGC
CGGGTTGCAATCACCTATCAGCTTTGGGGGGTTTGGATGTTGTCTGAGAC
ATCTTACAAGAATTACAAATGCCCTTGATGATGCTCTTCAGCTTAGAGAT
GACTCATTGCTCACTCGTGAGAATCTGCAAAATGTTTTGTGGTATTCGCC
TTCTTTATCAGTAACGGGGTTGTTCAATCGTGCTATGTCAGTACAGCCGG
GACAGAAAACTGCCGGACCACTACTCGATGAGTACGGTATAAACGAAGTG
TTATGGTCGAACATGAAAGCAATGGAGTTTCTCGGTGAGAAGGTGCAGCT
GCCGTTTCTCCGCGATGTCGTCGGGGCAAGAGGCTTGTTGAATACTATCC
TGGTTATGGCGGTCAGAAGACCAGACTTGGCGTTTAATGTCGTTTTCTTC
CTAGGTTTGAAAGAGTTGGTAGGATGGAGTCGTCACTTCTTCGCGCTTCT
TGGCTATGCAGCAGTGTTCCCAGTCATGGAGTTGTTCCAACGTGCTTCCA
AGAGGACCAACATTCTCAATGTCAAACAACAGTTTTGGCTCGATCGCGCC
GTGGATGGAGTAAAGTATGGTAGCGGGGCGGATTATGAGCAGGAATAG

Coding sequence (CDS) from alignment at tig00000014_pilon:258137..259984+

>Ggra4994.t1 ID=Ggra4994.t1|Name=Ggra4994.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1848bp|location=Sequence derived from alignment at tig00000014_pilon:258137..259984+ (Gracilaria gracilis GNS1m male)
ATGCAGCCACTTCCGGCTTCTCACACTCTGCCATGTTTCTCGCCGGCTGT
GCCGTTGGCGCGAGCGCCACCGCGTTTGCTGCACCGGCGCACCAAGTCGC
GATACACGCTCATGAGcgtcccgacgccgtcgccgcgtcttcgccACTTT
CTGCAGAGCGCGTCGGAAGGAAACGCTCTCCAATCGTTGCAGCGCGCCGA
CACACTTTACGAGCGAATGAAGAGTAAGTCCACCACATATTCACCGCCGC
ACATCGTGCGCACGGACAGTCGAACCGTCATTGAACGCGGCCAAACCCTC
ACGTACGACATCATCGTCGCGGGCGGCACGCTGGGCATTCTTCACGCTGT
GGCGCtcgcgagacgcgggtggcgcgtcgctgtcgtggagcgaggcccgc
tggtcgGGCGCGCACAGGAGTGGAACACGTCGCGTTCGGAGATGAGTGCG
CTTCTGAAGGAGGGCGTTTTGACTCCTGAAGAGTTGGAAAGCGTTATTGT
CACCGAAGTTGAACAGCCGGGTCGGATACAGTTTGCCACTCGCTCGAATC
ATGACGAAGCTCTTCGCGTCCCGAATGTACTCAACGTGGGCGTGGCCCCT
GACGTGCTTCTTCGCCTTGCTAGAGACACTTTTGAGGAGCTTGGAGGTGT
TGTTTATGAGTTTGCTAGCGTTAAGAGCGTTGTTGTTGGTGATGATGCTG
CGCTTGTTACGCTTCGCAAGCAGAATTCTCAGGGAATCAAAGGAGCGCTT
GGTGCTGGTGGCACGGGGTTGCCTGGAACTGATTCAGATGAAGTTATCAC
CTTGAGTTCTAGATTGCTTATTGATGCCATGGGTTCGTTCTCCCCCATCG
CTCAACAGGCCAGGAATGGAAGGAAGCCTGACGGTGTTTGTATTGTAGTT
GGAAGCTGCATGAGCGGACCTTGGAACGACAAAGGTGCCTTGGATTTGAT
CTATTCTTCTCAACCCATTAATCAACGGAGAAGCACGCAATACTTCTGGG
AAGCTTTTCCTGTACAGCGAGAATCCGATGCTCGAACAACCTACATGTTC
GCGTACGGTCCTTGTGATGAACGACGCCACAGCCTTACGGAAACTCTGGA
AGACTATCTTCAGGAACTTCCAAAGTATCAGGGAATTGATGTGAACGACA
TGAAAGTGAAGAGGGTTTTGTTTGGTGCTTTTCCATCCTTTTACAAGAGC
AGTCCTGCCAAAGTCACGTGGGATCGCATCATCCCTGTAGGTGATGCTGC
CGGGTTGCAATCACCTATCAGCTTTGGGGGGTTTGGATGTTGTCTGAGAC
ATCTTACAAGAATTACAAATGCCCTTGATGATGCTCTTCAGCTTAGAGAT
GACTCATTGCTCACTCGTGAGAATCTGCAAAATGTTTTGTGGTATTCGCC
TTCTTTATCAGTAACGGGGTTGTTCAATCGTGCTATGTCAGTACAGCCGG
GACAGAAAACTGCCGGACCACTACTCGATGAGTACGGTATAAACGAAGTG
TTATGGTCGAACATGAAAGCAATGGAGTTTCTCGGTGAGAAGGTGCAGCT
GCCGTTTCTCCGCGATGTCGTCGGGGCAAGAGGCTTGTTGAATACTATCC
TGGTTATGGCGGTCAGAAGACCAGACTTGGCGTTTAATGTCGTTTTCTTC
CTAGGTTTGAAAGAGTTGGTAGGATGGAGTCGTCACTTCTTCGCGCTTCT
TGGCTATGCAGCAGTGTTCCCAGTCATGGAGTTGTTCCAACGTGCTTCCA
AGAGGACCAACATTCTCAATGTCAAACAACAGTTTTGGCTCGATCGCGCC
GTGGATGGAGTAAAGTATGGTAGCGGGGCGGATTATGAGCAGGAATAG