Ggra4993.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4993.t1
Unique Name	Ggra4993.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000014_pilon	contig	tig00000014_pilon:256267..257379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708024.1
PFAMs	Pribosyl_synth,Pribosyltran_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K00948
KEGG Reaction	R01049
KEGG Pathway	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00005
Evalue	2.87e-146
EggNOG OGs	COG0462@1\|root,KOG1448@2759\|Eukaryota
EC	2.7.6.1
Description	ribose phosphate diphosphokinase activity
COG category	EF
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4993	Ggra4993	Gracilaria gracilis GNS1m male	gene	tig00000014_pilon 256267..257379 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4993.t1.start1	Ggra4993.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000014_pilon 256267..256269 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4993.t1.CDS1	Ggra4993.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000014_pilon 256267..257379 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4993.t1.exon1	Ggra4993.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000014_pilon 256267..257379 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4993.t1.stop1	Ggra4993.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000014_pilon 257377..257379 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4993.t1	Ggra4993.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000014_pilon 256267..257379 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000014_pilon:256267..257379+
coding sequence from alignment at tig00000014_pilon:256267..257379+

mRNA sequence

>Ggra4993.t1 ID=Ggra4993.t1|Name=Ggra4993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MTVEVQKSEEGAQVPLESDQPYLFGSANGSGSLSTTNLMELDKALNYEIR
VVSGNANTELAKEIANHLKVRMTHAVVSRFSDGETRVAIEDNVRGKDVFI
VQPTSPPVNDHLMELLVLIDTLKRASAKRITAVMPYYGYSRQDRKHAPRV
PITARLVADLLQTAGAHRVLAFELHAGQIQGFFNIPVDHMFALPVFVNYL
KNSDLFKSSKGYEDIVVVSPDAGGMERARLLAKGLDTALAIIDKRRSAPN
VAHVVHVIGEVENRHCIIVDDMVDTAGTLTKAADALKEKGAKSVRACCIH
AVLSGPAVERIQKSCIEELVITNSIALSKEKMDALPCITRLSIGTLMAET
ISRVHREESVSTLFGTMSQG*

spliced messenger RNA

>Ggra4993.t1 ID=Ggra4993.t1|Name=Ggra4993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000014_pilon:256267..257379+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGTAGAGGTACAGAAGAGCGAAGAGGGCGCTCAGGTGCCGCTTGA
ATCTGATCAGCCGTATCTTTTCGGCAGTGCCAACGGCAGTGGCTCGCTCA
GTACCACCAATTTAATGGAGTTGGATAAGGCTCTCAACTATGAGATTCGC
GTCGTGTCAGGCAACGCAAACACCGAACTGGCCAAGGAGATTGCAAACCA
TCTCAAGGTTCGCATGACGCACGCGGTGGTGTCGCGCTTCTCTGACGGAG
AGACGCGCGTGGCGATTGAAGATAATGTGAGGGGAAAGGATGTGTTCATA
GTGCAGCCTACTTCTCCACCTGTGAACGATCATCTGATGGAGTTGTTGGT
GCTTATCGATACTCTCAAACGAGCGTCTGCTAAGCGAATCACCGCCGTTA
TGCCGTACTATGGATACAGTCGTCAGGATCGTAAGCATGCTCCGCGGGTG
CCCATCACCGCTCGACTTGTGGCGGACTTGCTTCAAACTGCTGGCGCACA
TCGTGTGCTGGCGTTTGAGCTGCACGCCGGACAGATTCAGGGATTCTTTA
ACATACCGGTGGATCATATGTTTGCACTTCCAGTGTTTGTGAACTACTTG
AAGAACTCGGACTTGTTTAAGAGCAGCAAGGGTTATGAGGATATTGTGGT
GGTTTCACCGGACGCAGGCGGTATGGAGCGTGCTCGATTGCTGGCAAAGG
GGTTGGATACGGCGCTGGCGATCATTGATAAGAGACGTTCAGCGCCGAAT
GTGGCTCACGTTGTGCATGTGATTGGGGAGGTGGAGAACCGACATTGTAT
AATTGTGGACGACATGGTGGATACGGCGGGAACTCTCACCAAGGCGGCAG
ACGCGTTGAAGGAGAAGGGCGCTAAGAGTGTACGCGCTTGCTGTATACAC
GCGGTGCTTTCGGGACCCGCTGTGGAACGCATTCAAAAGTCGTGCATCGA
AGAGCTGGTGATTACGAATTCGATTGCGCTGAGCAAGGAGAAGATGGACG
CTTTGCCGTGCATCACGAGATTGTCTATCGGCACGCTGATGGCGGAGACA
ATCAGTCGCGTGCACCGCGAGGAATCGGTGTCGACGCTGTTCGGAACTAT
GTCGCAGGGGTAG

protein sequence of Ggra4993.t1

>Ggra4993.t1 ID=Ggra4993.t1|Name=Ggra4993.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MTVEVQKSEEGAQVPLESDQPYLFGSANGSGSLSTTNLMELDKALNYEIR
VVSGNANTELAKEIANHLKVRMTHAVVSRFSDGETRVAIEDNVRGKDVFI
VQPTSPPVNDHLMELLVLIDTLKRASAKRITAVMPYYGYSRQDRKHAPRV
PITARLVADLLQTAGAHRVLAFELHAGQIQGFFNIPVDHMFALPVFVNYL
KNSDLFKSSKGYEDIVVVSPDAGGMERARLLAKGLDTALAIIDKRRSAPN
VAHVVHVIGEVENRHCIIVDDMVDTAGTLTKAADALKEKGAKSVRACCIH
AVLSGPAVERIQKSCIEELVITNSIALSKEKMDALPCITRLSIGTLMAET
ISRVHREESVSTLFGTMSQG*

mRNA from alignment at tig00000014_pilon:256267..257379+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4993.t1 ID=Ggra4993.t1|Name=Ggra4993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000014_pilon:256267..257379+ (Gracilaria gracilis GNS1m male)
ATGACAGTAGAGGTACAGAAGAGCGAAGAGGGCGCTCAGGTGCCGCTTGA
ATCTGATCAGCCGTATCTTTTCGGCAGTGCCAACGGCAGTGGCTCGCTCA
GTACCACCAATTTAATGGAGTTGGATAAGGCTCTCAACTATGAGATTCGC
GTCGTGTCAGGCAACGCAAACACCGAACTGGCCAAGGAGATTGCAAACCA
TCTCAAGGTTCGCATGACGCACGCGGTGGTGTCGCGCTTCTCTGACGGAG
AGACGCGCGTGGCGATTGAAGATAATGTGAGGGGAAAGGATGTGTTCATA
GTGCAGCCTACTTCTCCACCTGTGAACGATCATCTGATGGAGTTGTTGGT
GCTTATCGATACTCTCAAACGAGCGTCTGCTAAGCGAATCACCGCCGTTA
TGCCGTACTATGGATACAGTCGTCAGGATCGTAAGCATGCTCCGCGGGTG
CCCATCACCGCTCGACTTGTGGCGGACTTGCTTCAAACTGCTGGCGCACA
TCGTGTGCTGGCGTTTGAGCTGCACGCCGGACAGATTCAGGGATTCTTTA
ACATACCGGTGGATCATATGTTTGCACTTCCAGTGTTTGTGAACTACTTG
AAGAACTCGGACTTGTTTAAGAGCAGCAAGGGTTATGAGGATATTGTGGT
GGTTTCACCGGACGCAGGCGGTATGGAGCGTGCTCGATTGCTGGCAAAGG
GGTTGGATACGGCGCTGGCGATCATTGATAAGAGACGTTCAGCGCCGAAT
GTGGCTCACGTTGTGCATGTGATTGGGGAGGTGGAGAACCGACATTGTAT
AATTGTGGACGACATGGTGGATACGGCGGGAACTCTCACCAAGGCGGCAG
ACGCGTTGAAGGAGAAGGGCGCTAAGAGTGTACGCGCTTGCTGTATACAC
GCGGTGCTTTCGGGACCCGCTGTGGAACGCATTCAAAAGTCGTGCATCGA
AGAGCTGGTGATTACGAATTCGATTGCGCTGAGCAAGGAGAAGATGGACG
CTTTGCCGTGCATCACGAGATTGTCTATCGGCACGCTGATGGCGGAGACA
ATCAGTCGCGTGCACCGCGAGGAATCGGTGTCGACGCTGTTCGGAACTAT
GTCGCAGGGGTAG

Coding sequence (CDS) from alignment at tig00000014_pilon:256267..257379+

>Ggra4993.t1 ID=Ggra4993.t1|Name=Ggra4993.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000014_pilon:256267..257379+ (Gracilaria gracilis GNS1m male)
ATGACAGTAGAGGTACAGAAGAGCGAAGAGGGCGCTCAGGTGCCGCTTGA
ATCTGATCAGCCGTATCTTTTCGGCAGTGCCAACGGCAGTGGCTCGCTCA
GTACCACCAATTTAATGGAGTTGGATAAGGCTCTCAACTATGAGATTCGC
GTCGTGTCAGGCAACGCAAACACCGAACTGGCCAAGGAGATTGCAAACCA
TCTCAAGGTTCGCATGACGCACGCGGTGGTGTCGCGCTTCTCTGACGGAG
AGACGCGCGTGGCGATTGAAGATAATGTGAGGGGAAAGGATGTGTTCATA
GTGCAGCCTACTTCTCCACCTGTGAACGATCATCTGATGGAGTTGTTGGT
GCTTATCGATACTCTCAAACGAGCGTCTGCTAAGCGAATCACCGCCGTTA
TGCCGTACTATGGATACAGTCGTCAGGATCGTAAGCATGCTCCGCGGGTG
CCCATCACCGCTCGACTTGTGGCGGACTTGCTTCAAACTGCTGGCGCACA
TCGTGTGCTGGCGTTTGAGCTGCACGCCGGACAGATTCAGGGATTCTTTA
ACATACCGGTGGATCATATGTTTGCACTTCCAGTGTTTGTGAACTACTTG
AAGAACTCGGACTTGTTTAAGAGCAGCAAGGGTTATGAGGATATTGTGGT
GGTTTCACCGGACGCAGGCGGTATGGAGCGTGCTCGATTGCTGGCAAAGG
GGTTGGATACGGCGCTGGCGATCATTGATAAGAGACGTTCAGCGCCGAAT
GTGGCTCACGTTGTGCATGTGATTGGGGAGGTGGAGAACCGACATTGTAT
AATTGTGGACGACATGGTGGATACGGCGGGAACTCTCACCAAGGCGGCAG
ACGCGTTGAAGGAGAAGGGCGCTAAGAGTGTACGCGCTTGCTGTATACAC
GCGGTGCTTTCGGGACCCGCTGTGGAACGCATTCAAAAGTCGTGCATCGA
AGAGCTGGTGATTACGAATTCGATTGCGCTGAGCAAGGAGAAGATGGACG
CTTTGCCGTGCATCACGAGATTGTCTATCGGCACGCTGATGGCGGAGACA
ATCAGTCGCGTGCACCGCGAGGAATCGGTGTCGACGCTGTTCGGAACTAT
GTCGCAGGGGTAG