Ggra4991.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4991.t1
Unique NameGgra4991.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:250717..251460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010677287.1
PFAMsTLD
Max annot lvl35493|Streptophyta
Evalue2.12e-06
EggNOG OGsKOG4711@1|root,KOG4711@2759|Eukaryota,37ISG@33090|Viridiplantae,3GC9M@35493|Streptophyta
DescriptionTLD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4991Ggra4991Gracilaria gracilis GNS1m malegenetig00000014_pilon 250717..251460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4991.t1.stop1Ggra4991.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 250717..250719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4991.t1.CDS1Ggra4991.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 250717..251460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4991.t1.exon1Ggra4991.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 250717..251460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4991.t1.start1Ggra4991.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 251458..251460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4991.t1Ggra4991.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 250717..251460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4991.t1 ID=Ggra4991.t1|Name=Ggra4991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MAFVSCSPIRRPHLALVPRATSFPSTLFAAPPVRACATPEQTVDTSSKDD
THDRTPGFLLPPSTIASIVRGTMLEGYQLASVYSSEVHGFSNESFFDAQL
QLGGVPSLLLGQTETDIFFGGYTAYGFLARDDYREATNEKAMFVFSIEAD
QVRFALPTDLVLYDFYDYAVRFGAALLCIPMNPAKHVMKANAASSRCRMP
DGTTSVFGEYSMANLKSVQVLVAKKYIDELQRKQSKTNKSFFSRLFG*
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spliced messenger RNA

>Ggra4991.t1 ID=Ggra4991.t1|Name=Ggra4991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000014_pilon:250717..251460- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGTCAGCTGCAGCCCCATTCGTCGCCCGCACCTCGCACTTGT
TCCCAGGGCTACCTCCTTCCCCAGCACGCTATTTGCTGCACCTCCAGTCC
GTGCGTGTGCCACCCCTGAGCAAACCGTTGATACCTCCTCCAAAGATGAC
ACGCACGATCGAACGCCTGGCTTCCTTCTTCCGCCGTCAACCATAGCGAG
CATAGTACGAGGGACGATGCTGGAAGGCTACCAATTGGCTTCCGTTTATT
CCTCCGAGGTCCATGGCTTTTCTAATGAGTCCTTCTTCGATGCACAGTTA
CAGCTTGGCGGAGTGCCTTCCTTGTTGCTCGGTCAAACTGAAACAGATAT
CTTCTTCGGTGGCTATACGGCCTACGGCTTCCTGGCTCGCGATGATTATC
GAGAAGCCACAAATGAGAAAGCTATGTTTGTCTTCTCCATTGAGGCCGAT
CAAGTACGCTTTGCACTTCCAACAGATCTTGTACTCTATGATTTCTATGA
CTACGCAGTGCGATTCGGTGCAGCCCTGTTGTGTATCCCAATGAACCCGG
CAAAGCACGTAATGAAAGCTAACGCAGCCTCGTCAAGGTGTCGGATGCCT
GATGGTACAACAAGCGTGTTTGGTGAGTATAGTATGGCCAACTTGAAAAG
CGTGCAAGTACTTGTAGCGAAGAAGTACATTGATGAGCTGCAGCGCAAAC
AGTCAAAAACAAACAAGAGCTTCTTTTCCCGCCTTTTCGGCTAG
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protein sequence of Ggra4991.t1

>Ggra4991.t1 ID=Ggra4991.t1|Name=Ggra4991.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MAFVSCSPIRRPHLALVPRATSFPSTLFAAPPVRACATPEQTVDTSSKDD
THDRTPGFLLPPSTIASIVRGTMLEGYQLASVYSSEVHGFSNESFFDAQL
QLGGVPSLLLGQTETDIFFGGYTAYGFLARDDYREATNEKAMFVFSIEAD
QVRFALPTDLVLYDFYDYAVRFGAALLCIPMNPAKHVMKANAASSRCRMP
DGTTSVFGEYSMANLKSVQVLVAKKYIDELQRKQSKTNKSFFSRLFG*
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mRNA from alignment at tig00000014_pilon:250717..251460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4991.t1 ID=Ggra4991.t1|Name=Ggra4991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000014_pilon:250717..251460- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTCAGCTGCAGCCCCATTCGTCGCCCGCACCTCGCACTTGT
TCCCAGGGCTACCTCCTTCCCCAGCACGCTATTTGCTGCACCTCCAGTCC
GTGCGTGTGCCACCCCTGAGCAAACCGTTGATACCTCCTCCAAAGATGAC
ACGCACGATCGAACGCCTGGCTTCCTTCTTCCGCCGTCAACCATAGCGAG
CATAGTACGAGGGACGATGCTGGAAGGCTACCAATTGGCTTCCGTTTATT
CCTCCGAGGTCCATGGCTTTTCTAATGAGTCCTTCTTCGATGCACAGTTA
CAGCTTGGCGGAGTGCCTTCCTTGTTGCTCGGTCAAACTGAAACAGATAT
CTTCTTCGGTGGCTATACGGCCTACGGCTTCCTGGCTCGCGATGATTATC
GAGAAGCCACAAATGAGAAAGCTATGTTTGTCTTCTCCATTGAGGCCGAT
CAAGTACGCTTTGCACTTCCAACAGATCTTGTACTCTATGATTTCTATGA
CTACGCAGTGCGATTCGGTGCAGCCCTGTTGTGTATCCCAATGAACCCGG
CAAAGCACGTAATGAAAGCTAACGCAGCCTCGTCAAGGTGTCGGATGCCT
GATGGTACAACAAGCGTGTTTGGTGAGTATAGTATGGCCAACTTGAAAAG
CGTGCAAGTACTTGTAGCGAAGAAGTACATTGATGAGCTGCAGCGCAAAC
AGTCAAAAACAAACAAGAGCTTCTTTTCCCGCCTTTTCGGCTAG
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Coding sequence (CDS) from alignment at tig00000014_pilon:250717..251460-

>Ggra4991.t1 ID=Ggra4991.t1|Name=Ggra4991.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000014_pilon:250717..251460- (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTCAGCTGCAGCCCCATTCGTCGCCCGCACCTCGCACTTGT
TCCCAGGGCTACCTCCTTCCCCAGCACGCTATTTGCTGCACCTCCAGTCC
GTGCGTGTGCCACCCCTGAGCAAACCGTTGATACCTCCTCCAAAGATGAC
ACGCACGATCGAACGCCTGGCTTCCTTCTTCCGCCGTCAACCATAGCGAG
CATAGTACGAGGGACGATGCTGGAAGGCTACCAATTGGCTTCCGTTTATT
CCTCCGAGGTCCATGGCTTTTCTAATGAGTCCTTCTTCGATGCACAGTTA
CAGCTTGGCGGAGTGCCTTCCTTGTTGCTCGGTCAAACTGAAACAGATAT
CTTCTTCGGTGGCTATACGGCCTACGGCTTCCTGGCTCGCGATGATTATC
GAGAAGCCACAAATGAGAAAGCTATGTTTGTCTTCTCCATTGAGGCCGAT
CAAGTACGCTTTGCACTTCCAACAGATCTTGTACTCTATGATTTCTATGA
CTACGCAGTGCGATTCGGTGCAGCCCTGTTGTGTATCCCAATGAACCCGG
CAAAGCACGTAATGAAAGCTAACGCAGCCTCGTCAAGGTGTCGGATGCCT
GATGGTACAACAAGCGTGTTTGGTGAGTATAGTATGGCCAACTTGAAAAG
CGTGCAAGTACTTGTAGCGAAGAAGTACATTGATGAGCTGCAGCGCAAAC
AGTCAAAAACAAACAAGAGCTTCTTTTCCCGCCTTTTCGGCTAG
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