Ggra4990.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4990.t1
Unique NameGgra4990.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:248875..250071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0206194
Max annot lvl554915|Amoebozoa
Evalue3.25e-21
EggNOG OGs28NG8@1|root,2S6X1@2759|Eukaryota,3XFB3@554915|Amoebozoa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4990Ggra4990Gracilaria gracilis GNS1m malegenetig00000014_pilon 248875..250071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4990.t1.stop1Ggra4990.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 248875..248877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4990.t1.CDS1Ggra4990.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 248875..250071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4990.t1.exon1Ggra4990.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 248875..250071 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4990.t1.start1Ggra4990.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 250069..250071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4990.t1Ggra4990.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 248875..250071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4990.t1 ID=Ggra4990.t1|Name=Ggra4990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MASSDSVEKQPMETKAKDSTKLPIRETLYSRLEEIKKLYQMDKLLRASRI
LSTLLADVEALQSSPSSESQPLVEEIQSTLSNPLYVRIASECSQLENLRE
RLSTEHRDGWTISYDGAQTKVWYRNEPNTSSHSILIEGEIHAPLQNVAAL
IYEADLYERLFWYVTSARRLEIKNPTPLRRAAYITVFAPWPLYARDVAVY
AFAVDALDEDDSVVVVTKSIDDSHPMKEKVPEARTLSRTVRADIYTSGFV
LFPKSPGVTKARFLYNVNPHLAFVPMALVNWGARTICRWSMRTLETRAQN
LDRLSPLYKERMQSHPFYDFVRSRLSQFWERKGMLTEGEHPEQSGAASLA
NRRSHSFDPDIQPQLPPTSVIKAIVTGDRGNDSNKTSRVKAFFGGKRS*
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spliced messenger RNA

>Ggra4990.t1 ID=Ggra4990.t1|Name=Ggra4990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000014_pilon:248875..250071- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTTCAGATTCAGTTGAGAAACAACCGATGGAAACGAAAGCTAA
GGACTCCACCAAGCTCCCTATTCGTGAGACTCTATACAGCCGTCTTGAAG
AGATTAAAAAGCTTTACCAAATGGATAAGCTGCTGCGAGCTTCCCGTATA
TTATCAACCTTACTCGCTGACGTTGAAGCACTACAATCTTCTCCATCATC
GGAATCACAACCACTTGTAGAAGAAATACAAAGCACATTATCCAATCCAC
TGTACGTCCGCATAGCTTCAGAATGCTCACAGCTCGAAAACTTGCGTGAA
CGATTAAGCACAGAACATCGTGATGGATGGACGATCTCGTATGATGGAGC
CCAAACAAAGGTTTGGTACCGAAACGAGCCTAACACCAGTTCACACTCCA
TTCTCATCGAGGGGGAAATTCACGCCCCCCTTCAAAACGTTGCCGCCTTG
ATCTACGAGGCTGACCTTTACGAACGTCTTTTCTGGTATGTTACTTCCGC
AAGAAGGCTTGAAATTAAGAATCCGACTCCACTACGTCGCGCGGCATATA
TAACCGTATTTGCTCCGTGGCCTCTGTATGCTCGCGATGTTGCCGTATAC
GCATTTGCCGTTGATGCTCTTGATGAGGACGACAGTGTGGTAGTAGTCAC
CAAATCTATCGATGACTCTCACCCTATGAAGGAAAAGGTTCCGGAGGCCA
GAACTCTGTCCAGAACCGTAAGGGCAGACATATACACTTCCGGTTTCGTG
CTTTTCCCTAAAAGTCCCGGTGTAACAAAAGCCCGGTTTCTGTATAATGT
CAATCCACATCTGGCTTTTGTTCCCATGGCTCTAGTCAATTGGGGAGCTA
GAACAATTTGTAGATGGTCGATGAGAACGCTCGAAACTCGGGCTCAAAAC
TTGGACAGACTCTCTCCCTTGTACAAAGAAAGGATGCAGTCGCACCCGTT
CTATGACTTCGTTAGAAGCCGTCTTAGTCAGTTCTGGGAACGAAAAGGAA
TGCTCACAGAGGGTGAGCATCCTGAGCAGTCTGGAGCAGCATCATTAGCA
AACCGTCGTTCCCACAGTTTTGATCCAGACATTCAACCACAGCTTCCACC
GACATCTGTGATTAAAGCCATCGTCACAGGCGATCGCGGAAATGATTCAA
ACAAAACGAGTCGCGTCAAGGCCTTCTTCGGTGGCAAACGTTCTTAG
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protein sequence of Ggra4990.t1

>Ggra4990.t1 ID=Ggra4990.t1|Name=Ggra4990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MASSDSVEKQPMETKAKDSTKLPIRETLYSRLEEIKKLYQMDKLLRASRI
LSTLLADVEALQSSPSSESQPLVEEIQSTLSNPLYVRIASECSQLENLRE
RLSTEHRDGWTISYDGAQTKVWYRNEPNTSSHSILIEGEIHAPLQNVAAL
IYEADLYERLFWYVTSARRLEIKNPTPLRRAAYITVFAPWPLYARDVAVY
AFAVDALDEDDSVVVVTKSIDDSHPMKEKVPEARTLSRTVRADIYTSGFV
LFPKSPGVTKARFLYNVNPHLAFVPMALVNWGARTICRWSMRTLETRAQN
LDRLSPLYKERMQSHPFYDFVRSRLSQFWERKGMLTEGEHPEQSGAASLA
NRRSHSFDPDIQPQLPPTSVIKAIVTGDRGNDSNKTSRVKAFFGGKRS*
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mRNA from alignment at tig00000014_pilon:248875..250071-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4990.t1 ID=Ggra4990.t1|Name=Ggra4990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000014_pilon:248875..250071- (Gracilaria gracilis GNS1m male)
ATGGCTTCTTCAGATTCAGTTGAGAAACAACCGATGGAAACGAAAGCTAA
GGACTCCACCAAGCTCCCTATTCGTGAGACTCTATACAGCCGTCTTGAAG
AGATTAAAAAGCTTTACCAAATGGATAAGCTGCTGCGAGCTTCCCGTATA
TTATCAACCTTACTCGCTGACGTTGAAGCACTACAATCTTCTCCATCATC
GGAATCACAACCACTTGTAGAAGAAATACAAAGCACATTATCCAATCCAC
TGTACGTCCGCATAGCTTCAGAATGCTCACAGCTCGAAAACTTGCGTGAA
CGATTAAGCACAGAACATCGTGATGGATGGACGATCTCGTATGATGGAGC
CCAAACAAAGGTTTGGTACCGAAACGAGCCTAACACCAGTTCACACTCCA
TTCTCATCGAGGGGGAAATTCACGCCCCCCTTCAAAACGTTGCCGCCTTG
ATCTACGAGGCTGACCTTTACGAACGTCTTTTCTGGTATGTTACTTCCGC
AAGAAGGCTTGAAATTAAGAATCCGACTCCACTACGTCGCGCGGCATATA
TAACCGTATTTGCTCCGTGGCCTCTGTATGCTCGCGATGTTGCCGTATAC
GCATTTGCCGTTGATGCTCTTGATGAGGACGACAGTGTGGTAGTAGTCAC
CAAATCTATCGATGACTCTCACCCTATGAAGGAAAAGGTTCCGGAGGCCA
GAACTCTGTCCAGAACCGTAAGGGCAGACATATACACTTCCGGTTTCGTG
CTTTTCCCTAAAAGTCCCGGTGTAACAAAAGCCCGGTTTCTGTATAATGT
CAATCCACATCTGGCTTTTGTTCCCATGGCTCTAGTCAATTGGGGAGCTA
GAACAATTTGTAGATGGTCGATGAGAACGCTCGAAACTCGGGCTCAAAAC
TTGGACAGACTCTCTCCCTTGTACAAAGAAAGGATGCAGTCGCACCCGTT
CTATGACTTCGTTAGAAGCCGTCTTAGTCAGTTCTGGGAACGAAAAGGAA
TGCTCACAGAGGGTGAGCATCCTGAGCAGTCTGGAGCAGCATCATTAGCA
AACCGTCGTTCCCACAGTTTTGATCCAGACATTCAACCACAGCTTCCACC
GACATCTGTGATTAAAGCCATCGTCACAGGCGATCGCGGAAATGATTCAA
ACAAAACGAGTCGCGTCAAGGCCTTCTTCGGTGGCAAACGTTCTTAG
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Coding sequence (CDS) from alignment at tig00000014_pilon:248875..250071-

>Ggra4990.t1 ID=Ggra4990.t1|Name=Ggra4990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000014_pilon:248875..250071- (Gracilaria gracilis GNS1m male)
ATGGCTTCTTCAGATTCAGTTGAGAAACAACCGATGGAAACGAAAGCTAA
GGACTCCACCAAGCTCCCTATTCGTGAGACTCTATACAGCCGTCTTGAAG
AGATTAAAAAGCTTTACCAAATGGATAAGCTGCTGCGAGCTTCCCGTATA
TTATCAACCTTACTCGCTGACGTTGAAGCACTACAATCTTCTCCATCATC
GGAATCACAACCACTTGTAGAAGAAATACAAAGCACATTATCCAATCCAC
TGTACGTCCGCATAGCTTCAGAATGCTCACAGCTCGAAAACTTGCGTGAA
CGATTAAGCACAGAACATCGTGATGGATGGACGATCTCGTATGATGGAGC
CCAAACAAAGGTTTGGTACCGAAACGAGCCTAACACCAGTTCACACTCCA
TTCTCATCGAGGGGGAAATTCACGCCCCCCTTCAAAACGTTGCCGCCTTG
ATCTACGAGGCTGACCTTTACGAACGTCTTTTCTGGTATGTTACTTCCGC
AAGAAGGCTTGAAATTAAGAATCCGACTCCACTACGTCGCGCGGCATATA
TAACCGTATTTGCTCCGTGGCCTCTGTATGCTCGCGATGTTGCCGTATAC
GCATTTGCCGTTGATGCTCTTGATGAGGACGACAGTGTGGTAGTAGTCAC
CAAATCTATCGATGACTCTCACCCTATGAAGGAAAAGGTTCCGGAGGCCA
GAACTCTGTCCAGAACCGTAAGGGCAGACATATACACTTCCGGTTTCGTG
CTTTTCCCTAAAAGTCCCGGTGTAACAAAAGCCCGGTTTCTGTATAATGT
CAATCCACATCTGGCTTTTGTTCCCATGGCTCTAGTCAATTGGGGAGCTA
GAACAATTTGTAGATGGTCGATGAGAACGCTCGAAACTCGGGCTCAAAAC
TTGGACAGACTCTCTCCCTTGTACAAAGAAAGGATGCAGTCGCACCCGTT
CTATGACTTCGTTAGAAGCCGTCTTAGTCAGTTCTGGGAACGAAAAGGAA
TGCTCACAGAGGGTGAGCATCCTGAGCAGTCTGGAGCAGCATCATTAGCA
AACCGTCGTTCCCACAGTTTTGATCCAGACATTCAACCACAGCTTCCACC
GACATCTGTGATTAAAGCCATCGTCACAGGCGATCGCGGAAATGATTCAA
ACAAAACGAGTCGCGTCAAGGCCTTCTTCGGTGGCAAACGTTCTTAG
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