Ggra4983.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4983.t1
Unique NameGgra4983.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:233978..234616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006676033.1
Preferred nameTOA1
PFAMsTFIIA
Max annot lvl4751|Fungi
KEGG koko:K03122
KEGG Pathwayko03022,ko05203,map03022,map05203
GOsGO:0000428,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005672,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue6.22e-06
EggNOG OGsKOG2652@1|root,KOG2652@2759|Eukaryota,39HJM@33154|Opisthokonta,3P5JD@4751|Fungi
DescriptionTranscription factor
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4983Ggra4983Gracilaria gracilis GNS1m malegenetig00000014_pilon 233978..234616 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4983.t1.start1Ggra4983.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 233978..233980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4983.t1.CDS1Ggra4983.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 233978..234616 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4983.t1.exon1Ggra4983.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 233978..234616 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4983.t1.stop1Ggra4983.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 234614..234616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4983.t1Ggra4983.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 233978..234616 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4983.t1 ID=Ggra4983.t1|Name=Ggra4983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MNQAHVLEVYLRVIDATIEGVRAELVDKGASGSAIDSLAVLKKRWAERLH
THEFTDDPAIVEKPSSSGKNSKAKKPDPGLTPKVPLKPPGSRNGVISVAA
LTNDTEEQNGPPLPPIPRKTPSESEVVEVKVEERPLKRQRIPDDGKAEDK
GEALDSSDSESESDDEAPENLVLAQYEKVRKGPKWKLILKEGIVVIRDRE
YLFNKATCDLDF*
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spliced messenger RNA

>Ggra4983.t1 ID=Ggra4983.t1|Name=Ggra4983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000014_pilon:233978..234616+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCAAGCGCATGTCCTCGAAGTTTACCTTCGGGTAATCGACGCGAC
CATTGAGGGCGTTCGCGCCGAGCTTGTCGACAAAGGCGCTTCGGGCTCCG
CCATCGACAGCCTTGCCGTCCTCAAGAAGCGATGGGCGGAACGCTTGCAC
ACTCATGAGTTCACGGACGACCCGGCCATCGTCGAGAAGCCGTCCTCTTC
CGGCAAGAACTCTAAGGCAAAGAAGCCAGACCCGGGCCTCACCCCAAAGG
TCCCGCTCAAGCCGCCCGGAAGCCGCAACGGCGTAATCTCTGTGGCAGCT
CTAACTAACGACACAGAAGAGCAGAACGGTCCACCTCTGCCCCCGATTCC
TCGGAAGACACCGAGTGAGTCCGAAGTTGTGGAGGTCAAGGTGGAGGAGC
GTCCCTTGAAGAGGCAGCGGATACCCGATGACGGGAAAGCGGAGGACAAA
GGGGAAGCCTTGGATAGCAGTGACAGCGAGAGTGAATCGGATGATGAAGC
CCCAGAGAATCTTGTCCTTGCACAGTATGAGAAAGTGAGGAAGGGACCGA
AATGGAAGCTAATACTCAAGGAAGGTATTGTGGTCATTCGCGACCGAGAG
TATTTGTTCAATAAAGCGACATGCGACCTAGACTTTTAG
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protein sequence of Ggra4983.t1

>Ggra4983.t1 ID=Ggra4983.t1|Name=Ggra4983.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MNQAHVLEVYLRVIDATIEGVRAELVDKGASGSAIDSLAVLKKRWAERLH
THEFTDDPAIVEKPSSSGKNSKAKKPDPGLTPKVPLKPPGSRNGVISVAA
LTNDTEEQNGPPLPPIPRKTPSESEVVEVKVEERPLKRQRIPDDGKAEDK
GEALDSSDSESESDDEAPENLVLAQYEKVRKGPKWKLILKEGIVVIRDRE
YLFNKATCDLDF*
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mRNA from alignment at tig00000014_pilon:233978..234616+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4983.t1 ID=Ggra4983.t1|Name=Ggra4983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000014_pilon:233978..234616+ (Gracilaria gracilis GNS1m male)
ATGAACCAAGCGCATGTCCTCGAAGTTTACCTTCGGGTAATCGACGCGAC
CATTGAGGGCGTTCGCGCCGAGCTTGTCGACAAAGGCGCTTCGGGCTCCG
CCATCGACAGCCTTGCCGTCCTCAAGAAGCGATGGGCGGAACGCTTGCAC
ACTCATGAGTTCACGGACGACCCGGCCATCGTCGAGAAGCCGTCCTCTTC
CGGCAAGAACTCTAAGGCAAAGAAGCCAGACCCGGGCCTCACCCCAAAGG
TCCCGCTCAAGCCGCCCGGAAGCCGCAACGGCGTAATCTCTGTGGCAGCT
CTAACTAACGACACAGAAGAGCAGAACGGTCCACCTCTGCCCCCGATTCC
TCGGAAGACACCGAGTGAGTCCGAAGTTGTGGAGGTCAAGGTGGAGGAGC
GTCCCTTGAAGAGGCAGCGGATACCCGATGACGGGAAAGCGGAGGACAAA
GGGGAAGCCTTGGATAGCAGTGACAGCGAGAGTGAATCGGATGATGAAGC
CCCAGAGAATCTTGTCCTTGCACAGTATGAGAAAGTGAGGAAGGGACCGA
AATGGAAGCTAATACTCAAGGAAGGTATTGTGGTCATTCGCGACCGAGAG
TATTTGTTCAATAAAGCGACATGCGACCTAGACTTTTAG
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Coding sequence (CDS) from alignment at tig00000014_pilon:233978..234616+

>Ggra4983.t1 ID=Ggra4983.t1|Name=Ggra4983.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000014_pilon:233978..234616+ (Gracilaria gracilis GNS1m male)
ATGAACCAAGCGCATGTCCTCGAAGTTTACCTTCGGGTAATCGACGCGAC
CATTGAGGGCGTTCGCGCCGAGCTTGTCGACAAAGGCGCTTCGGGCTCCG
CCATCGACAGCCTTGCCGTCCTCAAGAAGCGATGGGCGGAACGCTTGCAC
ACTCATGAGTTCACGGACGACCCGGCCATCGTCGAGAAGCCGTCCTCTTC
CGGCAAGAACTCTAAGGCAAAGAAGCCAGACCCGGGCCTCACCCCAAAGG
TCCCGCTCAAGCCGCCCGGAAGCCGCAACGGCGTAATCTCTGTGGCAGCT
CTAACTAACGACACAGAAGAGCAGAACGGTCCACCTCTGCCCCCGATTCC
TCGGAAGACACCGAGTGAGTCCGAAGTTGTGGAGGTCAAGGTGGAGGAGC
GTCCCTTGAAGAGGCAGCGGATACCCGATGACGGGAAAGCGGAGGACAAA
GGGGAAGCCTTGGATAGCAGTGACAGCGAGAGTGAATCGGATGATGAAGC
CCCAGAGAATCTTGTCCTTGCACAGTATGAGAAAGTGAGGAAGGGACCGA
AATGGAAGCTAATACTCAAGGAAGGTATTGTGGTCATTCGCGACCGAGAG
TATTTGTTCAATAAAGCGACATGCGACCTAGACTTTTAG
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