Ggra4982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4982.t1
Unique NameGgra4982.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:232526..233167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09489T0
PFAMsGST_C_3,GST_N
Max annot lvl33154|Opisthokonta
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K04097
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko01100,ko05204,map00480,map00590,map00980,map00982,map01100,map05204
Evalue4.34e-45
EggNOG OGsKOG1695@1|root,KOG1695@2759|Eukaryota,3A82T@33154|Opisthokonta
EC2.5.1.18,5.3.99.2
DescriptionGlutathione S-transferase, C-terminal domain
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4982Ggra4982Gracilaria gracilis GNS1m malegenetig00000014_pilon 232526..233167 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4982.t1.stop1Ggra4982.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 232526..232528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4982.t1.CDS1Ggra4982.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 232526..233167 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4982.t1.exon1Ggra4982.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 232526..233167 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4982.t1.start1Ggra4982.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 233165..233167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4982.t1Ggra4982.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 232526..233167 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4982.t1 ID=Ggra4982.t1|Name=Ggra4982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MSPMKLTYFDLRGRGEPIRLAFQISGIDYEDHRFPFSSWKDIKPTTPYGS
VPTLTIDGEMMAQSNAILRYVGKLGDLYPTDPLQALKVDEIVDTMVDLFT
VLYGYRGDDQEKLKEQRTKFVTEAMPRYAGAMEKRLELFGEGVYAVGSKI
SIADIAITCFITAIKCGVMDFVKTDIFDEYPKLTAIHKAVMELPSVAEWY
KKYPIKYQDPKME*
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spliced messenger RNA

>Ggra4982.t1 ID=Ggra4982.t1|Name=Ggra4982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000014_pilon:232526..233167- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCATGAAGCTCACTTACTTCGACCTTAGGGGCCGCGGTGAACC
CATCCGTCTTGCCTTTCAAATTTCCGGCATCGACTATGAGGATCACCGAT
TTCCCTTTTCGTCATGGAAGGACATCAAGCCAACGACCCCCTACGGCTCA
GTCCCAACGTTGACTATCGATGGCGAAATGATGGCACAGTCGAACGCAAT
CCTTCGATACGTGGGGAAGCTTGGAGACTTGTATCCCACCGATCCGCTTC
AGGCTTTGAAGGTTGATGAGATTGTGGATACCATGGTCGATCTGTTTACT
GTTCTTTATGGTTACAGGGGTGATGATCAGGAGAAGCTCAAGGAGCAGCG
AACCAAATTTGTTACTGAAGCCATGCCCCGTTACGCTGGAGCTATGGAGA
AAAGGCTGGAATTGTTTGGCGAGGGTGTGTACGCAGTAGGTAGCAAGATT
TCAATTGCTGATATTGCTATTACGTGCTTCATTACTGCCATTAAGTGTGG
AGTAATGGACTTCGTGAAGACTGATATCTTCGACGAATATCCGAAGCTCA
CGGCAATCCACAAGGCTGTTATGGAGCTGCCGAGCGTTGCTGAGTGGTAT
AAGAAGTACCCCATCAAGTACCAGGACCCGAAGATGGAGTAA
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protein sequence of Ggra4982.t1

>Ggra4982.t1 ID=Ggra4982.t1|Name=Ggra4982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MSPMKLTYFDLRGRGEPIRLAFQISGIDYEDHRFPFSSWKDIKPTTPYGS
VPTLTIDGEMMAQSNAILRYVGKLGDLYPTDPLQALKVDEIVDTMVDLFT
VLYGYRGDDQEKLKEQRTKFVTEAMPRYAGAMEKRLELFGEGVYAVGSKI
SIADIAITCFITAIKCGVMDFVKTDIFDEYPKLTAIHKAVMELPSVAEWY
KKYPIKYQDPKME*
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mRNA from alignment at tig00000014_pilon:232526..233167-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4982.t1 ID=Ggra4982.t1|Name=Ggra4982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000014_pilon:232526..233167- (Gracilaria gracilis GNS1m male)
ATGTCGCCCATGAAGCTCACTTACTTCGACCTTAGGGGCCGCGGTGAACC
CATCCGTCTTGCCTTTCAAATTTCCGGCATCGACTATGAGGATCACCGAT
TTCCCTTTTCGTCATGGAAGGACATCAAGCCAACGACCCCCTACGGCTCA
GTCCCAACGTTGACTATCGATGGCGAAATGATGGCACAGTCGAACGCAAT
CCTTCGATACGTGGGGAAGCTTGGAGACTTGTATCCCACCGATCCGCTTC
AGGCTTTGAAGGTTGATGAGATTGTGGATACCATGGTCGATCTGTTTACT
GTTCTTTATGGTTACAGGGGTGATGATCAGGAGAAGCTCAAGGAGCAGCG
AACCAAATTTGTTACTGAAGCCATGCCCCGTTACGCTGGAGCTATGGAGA
AAAGGCTGGAATTGTTTGGCGAGGGTGTGTACGCAGTAGGTAGCAAGATT
TCAATTGCTGATATTGCTATTACGTGCTTCATTACTGCCATTAAGTGTGG
AGTAATGGACTTCGTGAAGACTGATATCTTCGACGAATATCCGAAGCTCA
CGGCAATCCACAAGGCTGTTATGGAGCTGCCGAGCGTTGCTGAGTGGTAT
AAGAAGTACCCCATCAAGTACCAGGACCCGAAGATGGAGTAA
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Coding sequence (CDS) from alignment at tig00000014_pilon:232526..233167-

>Ggra4982.t1 ID=Ggra4982.t1|Name=Ggra4982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000014_pilon:232526..233167- (Gracilaria gracilis GNS1m male)
ATGTCGCCCATGAAGCTCACTTACTTCGACCTTAGGGGCCGCGGTGAACC
CATCCGTCTTGCCTTTCAAATTTCCGGCATCGACTATGAGGATCACCGAT
TTCCCTTTTCGTCATGGAAGGACATCAAGCCAACGACCCCCTACGGCTCA
GTCCCAACGTTGACTATCGATGGCGAAATGATGGCACAGTCGAACGCAAT
CCTTCGATACGTGGGGAAGCTTGGAGACTTGTATCCCACCGATCCGCTTC
AGGCTTTGAAGGTTGATGAGATTGTGGATACCATGGTCGATCTGTTTACT
GTTCTTTATGGTTACAGGGGTGATGATCAGGAGAAGCTCAAGGAGCAGCG
AACCAAATTTGTTACTGAAGCCATGCCCCGTTACGCTGGAGCTATGGAGA
AAAGGCTGGAATTGTTTGGCGAGGGTGTGTACGCAGTAGGTAGCAAGATT
TCAATTGCTGATATTGCTATTACGTGCTTCATTACTGCCATTAAGTGTGG
AGTAATGGACTTCGTGAAGACTGATATCTTCGACGAATATCCGAAGCTCA
CGGCAATCCACAAGGCTGTTATGGAGCTGCCGAGCGTTGCTGAGTGGTAT
AAGAAGTACCCCATCAAGTACCAGGACCCGAAGATGGAGTAA
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