Ggra4981.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4981.t1
Unique NameGgra4981.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:231497..231883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121403.AUCV01000028_gene2455
PFAMsGlyoxalase
Max annot lvl28221|Deltaproteobacteria
Evalue8.83e-31
EggNOG OGsCOG0346@1|root,COG0346@2|Bacteria,1Q07V@1224|Proteobacteria,436F0@68525|delta/epsilon subdivisions,2WWDR@28221|Deltaproteobacteria
DescriptionGlyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4981Ggra4981Gracilaria gracilis GNS1m malegenetig00000014_pilon 231497..231883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4981.t1.start1Ggra4981.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 231497..231499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4981.t1.CDS1Ggra4981.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 231497..231883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4981.t1.exon1Ggra4981.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 231497..231883 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4981.t1.stop1Ggra4981.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 231881..231883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4981.t1Ggra4981.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 231497..231883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4981.t1 ID=Ggra4981.t1|Name=Ggra4981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MYLQADLDHIAIECQDVQKLLAFYTETLKFAPSGIKEYENGSRPFPSARV
SEITIIDFFKSDNASGLSGNGHFCFCIAKSDFADLKSRLEKEGITVDDPV
KRSGARGDGMSIYIRDPEGNQLEFRYYD*
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spliced messenger RNA

>Ggra4981.t1 ID=Ggra4981.t1|Name=Ggra4981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000014_pilon:231497..231883+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCTCCAAGCAGACCTGGATCACATTGCTATTGAGTGTCAAGACGT
GCAGAAACTATTGGCTTTCTATACGGAGACTCTGAAGTTCGCTCCGAGTG
GTATCAAGGAGTATGAGAATGGAAGTAGACCGTTTCCAAGTGCTCGAGTA
TCTGAAATAACAATCATCGACTTCTTCAAGTCTGATAACGCTAGTGGTTT
GTCTGGGAACGGCCACTTTTGTTTCTGCATCGCCAAGAGCGATTTTGCGG
ATTTGAAGAGTAGACTTGAGAAGGAAGGTATCACCGTGGATGACCCGGTG
AAAAGGAGTGGAGCACGTGGAGATGGAATGAGCATTTATATCAGGGACCC
AGAAGGAAATCAGCTCGAGTTCAGGTATTATGATTAA
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protein sequence of Ggra4981.t1

>Ggra4981.t1 ID=Ggra4981.t1|Name=Ggra4981.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MYLQADLDHIAIECQDVQKLLAFYTETLKFAPSGIKEYENGSRPFPSARV
SEITIIDFFKSDNASGLSGNGHFCFCIAKSDFADLKSRLEKEGITVDDPV
KRSGARGDGMSIYIRDPEGNQLEFRYYD*
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mRNA from alignment at tig00000014_pilon:231497..231883+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4981.t1 ID=Ggra4981.t1|Name=Ggra4981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000014_pilon:231497..231883+ (Gracilaria gracilis GNS1m male)
ATGTATCTCCAAGCAGACCTGGATCACATTGCTATTGAGTGTCAAGACGT
GCAGAAACTATTGGCTTTCTATACGGAGACTCTGAAGTTCGCTCCGAGTG
GTATCAAGGAGTATGAGAATGGAAGTAGACCGTTTCCAAGTGCTCGAGTA
TCTGAAATAACAATCATCGACTTCTTCAAGTCTGATAACGCTAGTGGTTT
GTCTGGGAACGGCCACTTTTGTTTCTGCATCGCCAAGAGCGATTTTGCGG
ATTTGAAGAGTAGACTTGAGAAGGAAGGTATCACCGTGGATGACCCGGTG
AAAAGGAGTGGAGCACGTGGAGATGGAATGAGCATTTATATCAGGGACCC
AGAAGGAAATCAGCTCGAGTTCAGGTATTATGATTAA
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Coding sequence (CDS) from alignment at tig00000014_pilon:231497..231883+

>Ggra4981.t1 ID=Ggra4981.t1|Name=Ggra4981.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000014_pilon:231497..231883+ (Gracilaria gracilis GNS1m male)
ATGTATCTCCAAGCAGACCTGGATCACATTGCTATTGAGTGTCAAGACGT
GCAGAAACTATTGGCTTTCTATACGGAGACTCTGAAGTTCGCTCCGAGTG
GTATCAAGGAGTATGAGAATGGAAGTAGACCGTTTCCAAGTGCTCGAGTA
TCTGAAATAACAATCATCGACTTCTTCAAGTCTGATAACGCTAGTGGTTT
GTCTGGGAACGGCCACTTTTGTTTCTGCATCGCCAAGAGCGATTTTGCGG
ATTTGAAGAGTAGACTTGAGAAGGAAGGTATCACCGTGGATGACCCGGTG
AAAAGGAGTGGAGCACGTGGAGATGGAATGAGCATTTATATCAGGGACCC
AGAAGGAAATCAGCTCGAGTTCAGGTATTATGATTAA
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