Ggra4980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4980.t1
Unique NameGgra4980.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:229658..230569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173023.KE650771_gene3626
Preferred namefabG
PFAMsadh_short_C2
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
Evalue1.17e-105
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1G0MD@1117|Cyanobacteria,1JIBJ@1189|Stigonemataceae
EC1.1.1.100
DescriptionEnoyl-(Acyl carrier protein) reductase
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4980Ggra4980Gracilaria gracilis GNS1m malegenetig00000014_pilon 229658..230569 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4980.t1.start1Ggra4980.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 229658..229660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4980.t1.CDS1Ggra4980.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 229658..230569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4980.t1.exon1Ggra4980.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 229658..230569 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4980.t1.stop1Ggra4980.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 230567..230569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4980.t1Ggra4980.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 229658..230569 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4980.t1 ID=Ggra4980.t1|Name=Ggra4980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MDRGSSLAFASPLSPLAVRSISRQFVTSIGGGRPSIQHVSSRSRSQIRTM
PLSTPAMSSEGKVAVVTGSSRGIGKAIALELANQGCKLVINYASSTEAAE
EVVESIKSSGGHAIAVKGNVADPDDVKALFKTTTDSFGAPDIVVNNAGIT
RDTLMLRMKPKQWKEVIDLNLSGVFLCTQAAAKLMLKNRSGRIVNISSVV
GLVGNVGQANYSAAKAGVIGLTMAAAKECASRGVTVNAIAPGFIKSDMTA
KLDIEGILKMIPMNRLGEPEEVAGLVRYLALDPSAAYITGHTFPIDGGMV
IGC*
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spliced messenger RNA

>Ggra4980.t1 ID=Ggra4980.t1|Name=Ggra4980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000014_pilon:229658..230569+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCGGTTCCAGCCTTGCCTTTGCATCCCCGTTGAGTCCATTGGC
TGTCCGCTCCATCTCGCGACAGTTCGTCACTTCAATCGGTGGTGGTCGCC
CGTCGATTCAACACGTATCGAGCCGGTCACGCTCACAGATTCGGACCATG
CCACTAAGCACTCCTGCCATGTCTTCGGAAGGGAAGGTAGCCGTGGTAAC
TGGTTCTTCTCGCGGTATCGGCAAGGCAATCGCACTTGAGCTCGCGAACC
AGGGCTGCAAACTGGTCATAAACTACGCTTCATCGACAGAAGCGGCAGAG
GAGGTTGTAGAATCAATAAAGTCTTCTGGTGGTCATGCAATTGCAGTGAA
GGGCAATGTGGCCGATCCAGATGACGTGAAAGCATTGTTTAAAACCACTA
CCGATAGTTTTGGCGCCCCCGATATTGTTGTGAATAATGCTGGGATCACG
CGTGATACTTTGATGCTGCGAATGAAACCAAAGCAATGGAAAGAGGTAAT
TGATCTCAATCTCTCGGGAGTCTTCCTTTGTACCCAGGCGGCTGCGAAAC
TGATGCTCAAGAATCGATCCGGGCGCATTGTAAACATCAGTTCAGTTGTG
GGCTTAGTAGGGAATGTTGGCCAGGCAAACTATAGTGCAGCAAAGGCCGG
TGTAATCGGACTTACGATGGCCGCAGCAAAAGAATGTGCTTCACGGGGTG
TGACTGTAAACGCCATTGCACCTGGTTTCATCAAAAGCGACATGACTGCC
AAGTTAGACATTGAGGGCATTTTGAAGATGATTCCAATGAATCGCCTTGG
TGAACCGGAAGAGGTTGCGGGTCTGGTGCGCTACCTTGCGTTGGATCCCT
CTGCAGCGTACATCACAGGACACACTTTCCCCATAGACGGAGGGATGGTG
ATTGGATGCTAA
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protein sequence of Ggra4980.t1

>Ggra4980.t1 ID=Ggra4980.t1|Name=Ggra4980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MDRGSSLAFASPLSPLAVRSISRQFVTSIGGGRPSIQHVSSRSRSQIRTM
PLSTPAMSSEGKVAVVTGSSRGIGKAIALELANQGCKLVINYASSTEAAE
EVVESIKSSGGHAIAVKGNVADPDDVKALFKTTTDSFGAPDIVVNNAGIT
RDTLMLRMKPKQWKEVIDLNLSGVFLCTQAAAKLMLKNRSGRIVNISSVV
GLVGNVGQANYSAAKAGVIGLTMAAAKECASRGVTVNAIAPGFIKSDMTA
KLDIEGILKMIPMNRLGEPEEVAGLVRYLALDPSAAYITGHTFPIDGGMV
IGC*
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mRNA from alignment at tig00000014_pilon:229658..230569+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4980.t1 ID=Ggra4980.t1|Name=Ggra4980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000014_pilon:229658..230569+ (Gracilaria gracilis GNS1m male)
ATGGATCGCGGTTCCAGCCTTGCCTTTGCATCCCCGTTGAGTCCATTGGC
TGTCCGCTCCATCTCGCGACAGTTCGTCACTTCAATCGGTGGTGGTCGCC
CGTCGATTCAACACGTATCGAGCCGGTCACGCTCACAGATTCGGACCATG
CCACTAAGCACTCCTGCCATGTCTTCGGAAGGGAAGGTAGCCGTGGTAAC
TGGTTCTTCTCGCGGTATCGGCAAGGCAATCGCACTTGAGCTCGCGAACC
AGGGCTGCAAACTGGTCATAAACTACGCTTCATCGACAGAAGCGGCAGAG
GAGGTTGTAGAATCAATAAAGTCTTCTGGTGGTCATGCAATTGCAGTGAA
GGGCAATGTGGCCGATCCAGATGACGTGAAAGCATTGTTTAAAACCACTA
CCGATAGTTTTGGCGCCCCCGATATTGTTGTGAATAATGCTGGGATCACG
CGTGATACTTTGATGCTGCGAATGAAACCAAAGCAATGGAAAGAGGTAAT
TGATCTCAATCTCTCGGGAGTCTTCCTTTGTACCCAGGCGGCTGCGAAAC
TGATGCTCAAGAATCGATCCGGGCGCATTGTAAACATCAGTTCAGTTGTG
GGCTTAGTAGGGAATGTTGGCCAGGCAAACTATAGTGCAGCAAAGGCCGG
TGTAATCGGACTTACGATGGCCGCAGCAAAAGAATGTGCTTCACGGGGTG
TGACTGTAAACGCCATTGCACCTGGTTTCATCAAAAGCGACATGACTGCC
AAGTTAGACATTGAGGGCATTTTGAAGATGATTCCAATGAATCGCCTTGG
TGAACCGGAAGAGGTTGCGGGTCTGGTGCGCTACCTTGCGTTGGATCCCT
CTGCAGCGTACATCACAGGACACACTTTCCCCATAGACGGAGGGATGGTG
ATTGGATGCTAA
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Coding sequence (CDS) from alignment at tig00000014_pilon:229658..230569+

>Ggra4980.t1 ID=Ggra4980.t1|Name=Ggra4980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000014_pilon:229658..230569+ (Gracilaria gracilis GNS1m male)
ATGGATCGCGGTTCCAGCCTTGCCTTTGCATCCCCGTTGAGTCCATTGGC
TGTCCGCTCCATCTCGCGACAGTTCGTCACTTCAATCGGTGGTGGTCGCC
CGTCGATTCAACACGTATCGAGCCGGTCACGCTCACAGATTCGGACCATG
CCACTAAGCACTCCTGCCATGTCTTCGGAAGGGAAGGTAGCCGTGGTAAC
TGGTTCTTCTCGCGGTATCGGCAAGGCAATCGCACTTGAGCTCGCGAACC
AGGGCTGCAAACTGGTCATAAACTACGCTTCATCGACAGAAGCGGCAGAG
GAGGTTGTAGAATCAATAAAGTCTTCTGGTGGTCATGCAATTGCAGTGAA
GGGCAATGTGGCCGATCCAGATGACGTGAAAGCATTGTTTAAAACCACTA
CCGATAGTTTTGGCGCCCCCGATATTGTTGTGAATAATGCTGGGATCACG
CGTGATACTTTGATGCTGCGAATGAAACCAAAGCAATGGAAAGAGGTAAT
TGATCTCAATCTCTCGGGAGTCTTCCTTTGTACCCAGGCGGCTGCGAAAC
TGATGCTCAAGAATCGATCCGGGCGCATTGTAAACATCAGTTCAGTTGTG
GGCTTAGTAGGGAATGTTGGCCAGGCAAACTATAGTGCAGCAAAGGCCGG
TGTAATCGGACTTACGATGGCCGCAGCAAAAGAATGTGCTTCACGGGGTG
TGACTGTAAACGCCATTGCACCTGGTTTCATCAAAAGCGACATGACTGCC
AAGTTAGACATTGAGGGCATTTTGAAGATGATTCCAATGAATCGCCTTGG
TGAACCGGAAGAGGTTGCGGGTCTGGTGCGCTACCTTGCGTTGGATCCCT
CTGCAGCGTACATCACAGGACACACTTTCCCCATAGACGGAGGGATGGTG
ATTGGATGCTAA
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