Ggra4972.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4972.t1
Unique NameGgra4972.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:206900..208204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707724.1
Preferred nameWDR33
PFAMsCollagen,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K15542
KEGG Pathwayko03015,map03015
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
Evalue4.1e-131
EggNOG OGsCOG2319@1|root,KOG0284@2759|Eukaryota
DescriptionmRNA cleavage
COG categoryQ
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4972Ggra4972Gracilaria gracilis GNS1m malegenetig00000014_pilon 206900..208204 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4972.t1.start1Ggra4972.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 206900..206902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4972.t1.CDS1Ggra4972.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 206900..208204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4972.t1.exon1Ggra4972.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 206900..208204 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4972.t1.stop1Ggra4972.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 208202..208204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4972.t1Ggra4972.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 206900..208204 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4972.t1 ID=Ggra4972.t1|Name=Ggra4972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MAGANSAYGRPPRNDVFDGKQLRKAVARRTVDFNSSAMRWFLDRAWQSEL
GVDTPAIQPNMESTVNLVPPAADQMSQNPVTSSCTKFVHSSMNKPGCAIH
ACKWTPEGKRLITGAKTGEFTLWQGLTFNFETILQAHDAELRNIIWSHDE
NWMLSGDLKGTVKYWQSNMNNLQAFRAHNETIRDLSFSHTDAKFASCSDD
NTVKVWDFVQTREERVLEGHGWDVRCVDWHPSYPILASGSKDSNLKIWDA
KTGKNLTTLHGHKKTVVKVKWNANGNWLLSGSQDQLIKIYDIRMMKEFQA
FRGHKREVTSMQWHPQHENFFASGAYDGAIYFWVVGQSDPVASVPCAHQS
SVWDLDWHPMGHILATSSNDHATKFWTRQRPGDQMNDKYSTSTQNNEDGE
RGNTRGGRGLGKRSRQGFGQNDHGSRDRSSGRSR*
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spliced messenger RNA

>Ggra4972.t1 ID=Ggra4972.t1|Name=Ggra4972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000014_pilon:206900..208204+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGTGCTAATAGCGCGTACGGCAGACCTCCACGAAACGATGTTTT
CGACGGCAAACAGCTCAGAAAGGCCGTCGCAAGAAGAACTGTAGATTTCA
ACTCTTCAGCGATGCGTTGGTTTCTGGACCGCGCGTGGCAGAGCGAGCTT
GGTGTAGACACCCCTGCAATTCAACCAAACATGGAATCAACTGTCAACCT
TGTCCCACCGGCAGCGGACCAAATGAGTCAGAATCCTGTTACCAGTTCTT
GTACAAAGTTTGTTCACAGCAGCATGAACAAACCTGGGTGTGCAATACAT
GCATGCAAGTGGACTCCTGAAGGAAAGAGACTCATCACTGGAGCCAAGAC
AGGGGAGTTCACTTTATGGCAAGGTCTTACTTTCAATTTTGAAACCATTT
TGCAGGCACATGACGCTGAGCTGAGGAACATAATTTGGAGTCATGACGAG
AACTGGATGCTTTCTGGAGATCTGAAAGGAACCGTGAAGTACTGGCAGAG
TAACATGAACAATCTTCAAGCTTTTCGAGCACATAATGAAACCATCAGAG
ATCTCAGCTTCTCTCACACGGATGCAAAGTTCGCGTCGTGCTCAGATGAT
AATACCGTCAAAGTTTGGGACTTTGTTCAAACCCGTGAGGAGCGTGTGCT
GGAAGGGCATGGATGGGATGTACGTTGTGTTGACTGGCACCCCAGTTATC
CCATTCTCGCGTCTGGATCTAAGGATTCTAACCTCAAGATTTGGGATGCG
AAGACTGGTAAGAATCTCACCACTTTGCATGGACATAAGAAGACTGTTGT
GAAAGTGAAATGGAATGCAAATGGAAATTGGCTTCTTTCTGGGTCACAAG
ATCAGCTGATCAAGATTTACGATATAAGAATGATGAAAGAGTTTCAAGCA
TTTCGTGGCCATAAACGTGAAGTCACTTCAATGCAATGGCATCCGCAGCA
TGAGAATTTCTTTGCATCTGGCGCCTATGATGGTGCCATCTACTTCTGGG
TGGTTGGGCAATCTGATCCAGTTGCATCCGTTCCATGTGCTCACCAATCA
TCTGTTTGGGATTTGGATTGGCATCCCATGGGGCACATTCTAGCTACATC
ATCCAATGATCATGCCACAAAGTTCTGGACTAGACAGCGTCCTGGAGATC
AAATGAACGACAAGTACAGCACCTCTACCCAGAACAATGAAGACGGTGAG
CGTGGCAACACTAGAGGCGGGCGGGGTTTGGGAAAACGAAGCCGACAGGG
CTTTGGACAAAACGACCACGGTTCTCGGGATCGTTCTAGTGGGAGGTCAC
GGTAG
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protein sequence of Ggra4972.t1

>Ggra4972.t1 ID=Ggra4972.t1|Name=Ggra4972.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MAGANSAYGRPPRNDVFDGKQLRKAVARRTVDFNSSAMRWFLDRAWQSEL
GVDTPAIQPNMESTVNLVPPAADQMSQNPVTSSCTKFVHSSMNKPGCAIH
ACKWTPEGKRLITGAKTGEFTLWQGLTFNFETILQAHDAELRNIIWSHDE
NWMLSGDLKGTVKYWQSNMNNLQAFRAHNETIRDLSFSHTDAKFASCSDD
NTVKVWDFVQTREERVLEGHGWDVRCVDWHPSYPILASGSKDSNLKIWDA
KTGKNLTTLHGHKKTVVKVKWNANGNWLLSGSQDQLIKIYDIRMMKEFQA
FRGHKREVTSMQWHPQHENFFASGAYDGAIYFWVVGQSDPVASVPCAHQS
SVWDLDWHPMGHILATSSNDHATKFWTRQRPGDQMNDKYSTSTQNNEDGE
RGNTRGGRGLGKRSRQGFGQNDHGSRDRSSGRSR*
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mRNA from alignment at tig00000014_pilon:206900..208204+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4972.t1 ID=Ggra4972.t1|Name=Ggra4972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000014_pilon:206900..208204+ (Gracilaria gracilis GNS1m male)
ATGGCAGGTGCTAATAGCGCGTACGGCAGACCTCCACGAAACGATGTTTT
CGACGGCAAACAGCTCAGAAAGGCCGTCGCAAGAAGAACTGTAGATTTCA
ACTCTTCAGCGATGCGTTGGTTTCTGGACCGCGCGTGGCAGAGCGAGCTT
GGTGTAGACACCCCTGCAATTCAACCAAACATGGAATCAACTGTCAACCT
TGTCCCACCGGCAGCGGACCAAATGAGTCAGAATCCTGTTACCAGTTCTT
GTACAAAGTTTGTTCACAGCAGCATGAACAAACCTGGGTGTGCAATACAT
GCATGCAAGTGGACTCCTGAAGGAAAGAGACTCATCACTGGAGCCAAGAC
AGGGGAGTTCACTTTATGGCAAGGTCTTACTTTCAATTTTGAAACCATTT
TGCAGGCACATGACGCTGAGCTGAGGAACATAATTTGGAGTCATGACGAG
AACTGGATGCTTTCTGGAGATCTGAAAGGAACCGTGAAGTACTGGCAGAG
TAACATGAACAATCTTCAAGCTTTTCGAGCACATAATGAAACCATCAGAG
ATCTCAGCTTCTCTCACACGGATGCAAAGTTCGCGTCGTGCTCAGATGAT
AATACCGTCAAAGTTTGGGACTTTGTTCAAACCCGTGAGGAGCGTGTGCT
GGAAGGGCATGGATGGGATGTACGTTGTGTTGACTGGCACCCCAGTTATC
CCATTCTCGCGTCTGGATCTAAGGATTCTAACCTCAAGATTTGGGATGCG
AAGACTGGTAAGAATCTCACCACTTTGCATGGACATAAGAAGACTGTTGT
GAAAGTGAAATGGAATGCAAATGGAAATTGGCTTCTTTCTGGGTCACAAG
ATCAGCTGATCAAGATTTACGATATAAGAATGATGAAAGAGTTTCAAGCA
TTTCGTGGCCATAAACGTGAAGTCACTTCAATGCAATGGCATCCGCAGCA
TGAGAATTTCTTTGCATCTGGCGCCTATGATGGTGCCATCTACTTCTGGG
TGGTTGGGCAATCTGATCCAGTTGCATCCGTTCCATGTGCTCACCAATCA
TCTGTTTGGGATTTGGATTGGCATCCCATGGGGCACATTCTAGCTACATC
ATCCAATGATCATGCCACAAAGTTCTGGACTAGACAGCGTCCTGGAGATC
AAATGAACGACAAGTACAGCACCTCTACCCAGAACAATGAAGACGGTGAG
CGTGGCAACACTAGAGGCGGGCGGGGTTTGGGAAAACGAAGCCGACAGGG
CTTTGGACAAAACGACCACGGTTCTCGGGATCGTTCTAGTGGGAGGTCAC
GGTAG
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Coding sequence (CDS) from alignment at tig00000014_pilon:206900..208204+

>Ggra4972.t1 ID=Ggra4972.t1|Name=Ggra4972.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000014_pilon:206900..208204+ (Gracilaria gracilis GNS1m male)
ATGGCAGGTGCTAATAGCGCGTACGGCAGACCTCCACGAAACGATGTTTT
CGACGGCAAACAGCTCAGAAAGGCCGTCGCAAGAAGAACTGTAGATTTCA
ACTCTTCAGCGATGCGTTGGTTTCTGGACCGCGCGTGGCAGAGCGAGCTT
GGTGTAGACACCCCTGCAATTCAACCAAACATGGAATCAACTGTCAACCT
TGTCCCACCGGCAGCGGACCAAATGAGTCAGAATCCTGTTACCAGTTCTT
GTACAAAGTTTGTTCACAGCAGCATGAACAAACCTGGGTGTGCAATACAT
GCATGCAAGTGGACTCCTGAAGGAAAGAGACTCATCACTGGAGCCAAGAC
AGGGGAGTTCACTTTATGGCAAGGTCTTACTTTCAATTTTGAAACCATTT
TGCAGGCACATGACGCTGAGCTGAGGAACATAATTTGGAGTCATGACGAG
AACTGGATGCTTTCTGGAGATCTGAAAGGAACCGTGAAGTACTGGCAGAG
TAACATGAACAATCTTCAAGCTTTTCGAGCACATAATGAAACCATCAGAG
ATCTCAGCTTCTCTCACACGGATGCAAAGTTCGCGTCGTGCTCAGATGAT
AATACCGTCAAAGTTTGGGACTTTGTTCAAACCCGTGAGGAGCGTGTGCT
GGAAGGGCATGGATGGGATGTACGTTGTGTTGACTGGCACCCCAGTTATC
CCATTCTCGCGTCTGGATCTAAGGATTCTAACCTCAAGATTTGGGATGCG
AAGACTGGTAAGAATCTCACCACTTTGCATGGACATAAGAAGACTGTTGT
GAAAGTGAAATGGAATGCAAATGGAAATTGGCTTCTTTCTGGGTCACAAG
ATCAGCTGATCAAGATTTACGATATAAGAATGATGAAAGAGTTTCAAGCA
TTTCGTGGCCATAAACGTGAAGTCACTTCAATGCAATGGCATCCGCAGCA
TGAGAATTTCTTTGCATCTGGCGCCTATGATGGTGCCATCTACTTCTGGG
TGGTTGGGCAATCTGATCCAGTTGCATCCGTTCCATGTGCTCACCAATCA
TCTGTTTGGGATTTGGATTGGCATCCCATGGGGCACATTCTAGCTACATC
ATCCAATGATCATGCCACAAAGTTCTGGACTAGACAGCGTCCTGGAGATC
AAATGAACGACAAGTACAGCACCTCTACCCAGAACAATGAAGACGGTGAG
CGTGGCAACACTAGAGGCGGGCGGGGTTTGGGAAAACGAAGCCGACAGGG
CTTTGGACAAAACGACCACGGTTCTCGGGATCGTTCTAGTGGGAGGTCAC
GGTAG
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