Ggra4969.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4969.t1
Unique NameGgra4969.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:197465..198354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005643193.1
PFAMsDAO
Max annot lvl3041|Chlorophyta
Evalue4.15e-25
EggNOG OGsCOG0665@1|root,KOG2852@2759|Eukaryota,37HPT@33090|Viridiplantae,34JZA@3041|Chlorophyta
DescriptionFAD dependent oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4969Ggra4969Gracilaria gracilis GNS1m malegenetig00000014_pilon 197465..198354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4969.t1Ggra4969.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 197465..198354 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4969.t1.start1Ggra4969.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 197465..197467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4969.t1.CDS1Ggra4969.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 197465..197981 +
Ggra4969.t1.CDS2Ggra4969.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000014_pilon 198045..198105 +
Ggra4969.t1.CDS3Ggra4969.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000014_pilon 198282..198354 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4969.t1.exon1Ggra4969.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 197465..197981 +
Ggra4969.t1.exon2Ggra4969.t1.exon2Gracilaria gracilis GNS1m maleexontig00000014_pilon 198045..198105 +
Ggra4969.t1.exon3Ggra4969.t1.exon3Gracilaria gracilis GNS1m maleexontig00000014_pilon 198282..198354 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4969.t1.intron1Ggra4969.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000014_pilon 197982..198044 +
Ggra4969.t1.intron2Ggra4969.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000014_pilon 198106..198281 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4969.t1.stop1Ggra4969.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 198352..198354 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4969.t1 ID=Ggra4969.t1|Name=Ggra4969.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MGPWTQTARKWFPQLPQVSAHKAASLIIPITNLPPTALFTEFITPNHETR
TIEAYPRTDELYICQTAIAEPLPDDPSTARADPRDIDSLHNFAKVLNKDL
ALAASKRHTHRTQACWLPVSQDGLPFIGAVSDTDKSVLVATAHACWGILN
SPATAKAIAELVMHGRTISVDIRAICLLRAVPGASRAYAKLYELLHVSQL
ERSWEIQNEHSNNNCP*
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spliced messenger RNA

>Ggra4969.t1 ID=Ggra4969.t1|Name=Ggra4969.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000014_pilon:197465..198354+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCCATGGACTCAAACCGCACGCAAGTGGTTCCCACAGCTGCCACA
AGTGTCTGCTCACAAGGCCGCAAGTCTTATCATTCCTATCACCAACCTTC
CACCCACAGCGCTCTTCACCGAGTTCATCACGCCCAACCACGAAACGCGT
ACCATTGAGGCGTACCCACGAACGGACGAACTGTACATTTGCCAAACCGC
TATTGCAGAGCCGCTTCCGGACGACCCGTCCACCGCGCGCGCAGACCCGC
GCGATATCGATTCACTGCACAATTTCGCAAAGGTGCTCAACAAAGACCTC
GCGCTCGCGGCTTCTAAACGTCACACACACCGCACTCAGGCGTGTTGGTT
GCCTGTGAGTCAGGATGGCCTCCCGTTCATCGGTGCTGTAAGCGACACCG
ACAAGTCCGTTCTTGTGGCTACTGCGCACGCGTGCTGGGGTATTCTCAAC
TCGCCCGCTACGGCGAAAGCAATAGCGGAACTGGTTATGCATGGCCGTAC
CATTTCAGTGGACATTCGAGCGATTTGTTTGCTTCGCGCGGTACCGGGCG
CTTCCAGAGCTTACGCTAAGCTGTATGAACTTCTCCATGTTAGTCAGCTT
GAAAGAAGCTGGGAAATCCAGAACGAGCACTCGAATAATAACTGTCCGTA
G
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protein sequence of Ggra4969.t1

>Ggra4969.t1 ID=Ggra4969.t1|Name=Ggra4969.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MGPWTQTARKWFPQLPQVSAHKAASLIIPITNLPPTALFTEFITPNHETR
TIEAYPRTDELYICQTAIAEPLPDDPSTARADPRDIDSLHNFAKVLNKDL
ALAASKRHTHRTQACWLPVSQDGLPFIGAVSDTDKSVLVATAHACWGILN
SPATAKAIAELVMHGRTISVDIRAICLLRAVPGASRAYAKLYELLHVSQL
ERSWEIQNEHSNNNCP*
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mRNA from alignment at tig00000014_pilon:197465..198354+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4969.t1 ID=Ggra4969.t1|Name=Ggra4969.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=890bp|location=Sequence derived from alignment at tig00000014_pilon:197465..198354+ (Gracilaria gracilis GNS1m male)
ATGGGTCCATGGACTCAAACCGCACGCAAGTGGTTCCCACAGCTGCCACA
AGTGTCTGCTCACAAGGCCGCAAGTCTTATCATTCCTATCACCAACCTTC
CACCCACAGCGCTCTTCACCGAGTTCATCACGCCCAACCACGAAACGCGT
ACCATTGAGGCGTACCCACGAACGGACGAACTGTACATTTGCCAAACCGC
TATTGCAGAGCCGCTTCCGGACGACCCGTCCACCGCGCGCGCAGACCCGC
GCGATATCGATTCACTGCACAATTTCGCAAAGGTGCTCAACAAAGACCTC
GCGCTCGCGGCTTCTAAACGTCACACACACCGCACTCAGGCGTGTTGGTT
GCCTGTGAGTCAGGATGGCCTCCCGTTCATCGGTGCTGTAAGCGACACCG
ACAAGTCCGTTCTTGTGGCTACTGCGCACGCGTGCTGGGGTATTCTCAAC
TCGCCCGCTACGGCGAAAGCAATAGCGGAACTGGTTATGCATGGCCGTAC
CATTTCAGTGGACATTCGTGCCTTTGATCCCTCGCGCTTCTCGTCCCGCG
AAGAGAACGGTCATACGTGAAATCTCAGAGGAGCGATTTGTTTGCTTCGC
GCGGTACCGGGCGCTTCCAGAGCTTACGCTAAGCTGTATGAGTACGTACA
TTTACATTGTTCCCTCATCGATATGTCCCACACCACTTTTGCTCCGTTCA
CCGCCCTCCACTGTGTGTCGTCCATGGGTTGGTTTCCACGCGGTCATGTT
TCTTTTTGTTTTCGCTTGGGTGTTAACGAACGCTCGTGTAGAAGACTAAC
CTATTCGGATCACTTAGACTTCTCCATGTTAGTCAGCTTGAAAGAAGCTG
GGAAATCCAGAACGAGCACTCGAATAATAACTGTCCGTAG
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Coding sequence (CDS) from alignment at tig00000014_pilon:197465..198354+

>Ggra4969.t1 ID=Ggra4969.t1|Name=Ggra4969.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000014_pilon:197465..198354+ (Gracilaria gracilis GNS1m male)
ATGGGTCCATGGACTCAAACCGCACGCAAGTGGTTCCCACAGCTGCCACA
AGTGTCTGCTCACAAGGCCGCAAGTCTTATCATTCCTATCACCAACCTTC
CACCCACAGCGCTCTTCACCGAGTTCATCACGCCCAACCACGAAACGCGT
ACCATTGAGGCGTACCCACGAACGGACGAACTGTACATTTGCCAAACCGC
TATTGCAGAGCCGCTTCCGGACGACCCGTCCACCGCGCGCGCAGACCCGC
GCGATATCGATTCACTGCACAATTTCGCAAAGGTGCTCAACAAAGACCTC
GCGCTCGCGGCTTCTAAACGTCACACACACCGCACTCAGGCGTGTTGGTT
GCCTGTGAGTCAGGATGGCCTCCCGTTCATCGGTGCTGTAAGCGACACCG
ACAAGTCCGTTCTTGTGGCTACTGCGCACGCGTGCTGGGGTATTCTCAAC
TCGCCCGCTACGGCGAAAGCAATAGCGGAACTGGTTATGCATGGCCGTAC
CATTTCAGTGGACATTCGAGCGATTTGTTTGCTTCGCGCGGTACCGGGCG
CTTCCAGAGCTTACGCTAAGCTGTATGAACTTCTCCATGTTAGTCAGCTT
GAAAGAAGCTGGGAAATCCAGAACGAGCACTCGAATAATAACTGTCCGTA
G
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