Ggra4935.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4935.t1
Unique NameGgra4935.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:228120..228749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703006.1
PFAMsPeptidase_C97
Max annot lvl2759|Eukaryota
Evalue6.55e-48
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
DescriptionLys63-specific deubiquitinase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4935Ggra4935Gracilaria gracilis GNS1m malegenetig00000157_pilon 228120..228749 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4935.t1.stop1Ggra4935.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 228120..228122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4935.t1.CDS1Ggra4935.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 228120..228749 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4935.t1.exon1Ggra4935.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 228120..228749 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4935.t1.start1Ggra4935.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 228747..228749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4935.t1Ggra4935.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 228120..228749 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4935.t1 ID=Ggra4935.t1|Name=Ggra4935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MSPSDDFSTLPLPPGPGVPVELNVYDLQHPESPDAVSTLNGYLYAFGVGL
YHSGVCVYGVEYAYGGHPDPHTGVFSTRPKEAPDARFRQTLLIGFTRLSP
DQVKELVDAMSAVWLGNTYNLLTRNCNHFASDLCEMLTGKCAPEWVNRMA
WLGEKAKFLLPKGFDTPTAAPVTAERAREEQQLRELMEGALTDEDEYGNE
NRTDPDHDQ*
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spliced messenger RNA

>Ggra4935.t1 ID=Ggra4935.t1|Name=Ggra4935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000157_pilon:228120..228749- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGTCCGACGACTTTTCCACGCTGCCGTTGCCGCCGGGTCCAGG
CGTGCCGGTCGAGCTCAATGTATACGACCTGCAACACCCGGAGAGTCCTG
ACGCCGTCTCCACGCTCAACGGCTATCTGTACGCCTTTGGCGTCGGCCTG
TATCACAGCGGCGTCTGCGTATACGGCGTGGAGTATGCGTACGGTGGTCA
TCCCGACCCGCACACGGGCGTCTTTTCCACGCGTCCGAAGGAGGCGCCCG
ACGCTCGCTTTCGACAGACGTTGCTCATTGGCTTCACTCGACTGTCCCCC
GATCAGGTGAAGGAGCTTGTGGATGCCATGTCTGCCGTGTGGCTGGGCAA
CACTTATAACTTACTCACCAGAAACTGTAACCATTTTGCGAGCGACCTGT
GTGAAATGCTTACTGGCAAGTGCGCTCCAGAGTGGGTTAATCGCATGGCG
TGGCTTGGGGAGAAGGCCAAGTTTCTGTTGCCGAAGGGTTTTGATACACC
TACCGCTGCGCCCGTCACTGCGGAGCGGGCACGGGAAGAACAGCAGTTGC
GCGAACTCATGGAAGGCGCGCTAACAGACGAAGATGAGTACGGAAACGAG
AATCGAACAGACCCGGATCACGACCAGTGA
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protein sequence of Ggra4935.t1

>Ggra4935.t1 ID=Ggra4935.t1|Name=Ggra4935.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MSPSDDFSTLPLPPGPGVPVELNVYDLQHPESPDAVSTLNGYLYAFGVGL
YHSGVCVYGVEYAYGGHPDPHTGVFSTRPKEAPDARFRQTLLIGFTRLSP
DQVKELVDAMSAVWLGNTYNLLTRNCNHFASDLCEMLTGKCAPEWVNRMA
WLGEKAKFLLPKGFDTPTAAPVTAERAREEQQLRELMEGALTDEDEYGNE
NRTDPDHDQ*
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mRNA from alignment at tig00000157_pilon:228120..228749-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4935.t1 ID=Ggra4935.t1|Name=Ggra4935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000157_pilon:228120..228749- (Gracilaria gracilis GNS1m male)
ATGTCTCCGTCCGACGACTTTTCCACGCTGCCGTTGCCGCCGGGTCCAGG
CGTGCCGGTCGAGCTCAATGTATACGACCTGCAACACCCGGAGAGTCCTG
ACGCCGTCTCCACGCTCAACGGCTATCTGTACGCCTTTGGCGTCGGCCTG
TATCACAGCGGCGTCTGCGTATACGGCGTGGAGTATGCGTACGGTGGTCA
TCCCGACCCGCACACGGGCGTCTTTTCCACGCGTCCGAAGGAGGCGCCCG
ACGCTCGCTTTCGACAGACGTTGCTCATTGGCTTCACTCGACTGTCCCCC
GATCAGGTGAAGGAGCTTGTGGATGCCATGTCTGCCGTGTGGCTGGGCAA
CACTTATAACTTACTCACCAGAAACTGTAACCATTTTGCGAGCGACCTGT
GTGAAATGCTTACTGGCAAGTGCGCTCCAGAGTGGGTTAATCGCATGGCG
TGGCTTGGGGAGAAGGCCAAGTTTCTGTTGCCGAAGGGTTTTGATACACC
TACCGCTGCGCCCGTCACTGCGGAGCGGGCACGGGAAGAACAGCAGTTGC
GCGAACTCATGGAAGGCGCGCTAACAGACGAAGATGAGTACGGAAACGAG
AATCGAACAGACCCGGATCACGACCAGTGA
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Coding sequence (CDS) from alignment at tig00000157_pilon:228120..228749-

>Ggra4935.t1 ID=Ggra4935.t1|Name=Ggra4935.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000157_pilon:228120..228749- (Gracilaria gracilis GNS1m male)
ATGTCTCCGTCCGACGACTTTTCCACGCTGCCGTTGCCGCCGGGTCCAGG
CGTGCCGGTCGAGCTCAATGTATACGACCTGCAACACCCGGAGAGTCCTG
ACGCCGTCTCCACGCTCAACGGCTATCTGTACGCCTTTGGCGTCGGCCTG
TATCACAGCGGCGTCTGCGTATACGGCGTGGAGTATGCGTACGGTGGTCA
TCCCGACCCGCACACGGGCGTCTTTTCCACGCGTCCGAAGGAGGCGCCCG
ACGCTCGCTTTCGACAGACGTTGCTCATTGGCTTCACTCGACTGTCCCCC
GATCAGGTGAAGGAGCTTGTGGATGCCATGTCTGCCGTGTGGCTGGGCAA
CACTTATAACTTACTCACCAGAAACTGTAACCATTTTGCGAGCGACCTGT
GTGAAATGCTTACTGGCAAGTGCGCTCCAGAGTGGGTTAATCGCATGGCG
TGGCTTGGGGAGAAGGCCAAGTTTCTGTTGCCGAAGGGTTTTGATACACC
TACCGCTGCGCCCGTCACTGCGGAGCGGGCACGGGAAGAACAGCAGTTGC
GCGAACTCATGGAAGGCGCGCTAACAGACGAAGATGAGTACGGAAACGAG
AATCGAACAGACCCGGATCACGACCAGTGA
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