Ggra4930.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4930.t1
Unique NameGgra4930.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length758
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:211049..213472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS469CT
PFAMsPkinase,Pkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K04419
KEGG Pathwayko04010,ko04932,map04010,map04932
KEGG ModuleM00688,M00689
Evalue2.99e-79
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4930Ggra4930Gracilaria gracilis GNS1m malegenetig00000157_pilon 211049..213472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4930.t1Ggra4930.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 211049..213472 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4930.t1.start1Ggra4930.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 211049..211051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4930.t1.CDS1Ggra4930.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 211049..212572 +
Ggra4930.t1.CDS2Ggra4930.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000157_pilon 212662..212733 +
Ggra4930.t1.CDS3Ggra4930.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000157_pilon 212795..213472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4930.t1.exon1Ggra4930.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 211049..212572 +
Ggra4930.t1.exon2Ggra4930.t1.exon2Gracilaria gracilis GNS1m maleexontig00000157_pilon 212662..212733 +
Ggra4930.t1.exon3Ggra4930.t1.exon3Gracilaria gracilis GNS1m maleexontig00000157_pilon 212795..213472 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4930.t1.intron1Ggra4930.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000157_pilon 212573..212661 +
Ggra4930.t1.intron2Ggra4930.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000157_pilon 212734..212794 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4930.t1.stop1Ggra4930.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 213470..213472 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4930.t1 ID=Ggra4930.t1|Name=Ggra4930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=758bp
MDLHEFSTPLPNGITVHHLELHNLSVREQRPIIEFECTGDDEEHEFVLTV
FGRERAGLLADLTDYLESIALGVKQANIYSFPNGAVMDQFTLADPNRLLL
EDEMLVSIHDTLVKLIGNDGASLSRRTRLRMHFDNHSPQAKDSLYNYALL
RHRVPITLLAPRFAPRASMVRRTWSNIALTEMVEEQRQELERQHRNSEAV
TAGFVQHALSSLQEGEFLHHYSSHTRYRHKFNISDDHLYLCWGDSCAARL
SRYAGVLFGPKSAVFQDLGPRLVDPEWLCFSLVSNPAGHSATSVDTIDLV
CVSIDQLNRWLLGLQSLCNPDNRQLLHRLTLDDITRFRVIYKIRAHAHAR
GLTVRRYILKRVAEAGRRRSSADANRAQLDEVNQLEAELARLHKTLIDYA
RRETMLNTSLKDFQASWEVNVNDVELVHPIGHGAFSEMWKGLWRSTPVAV
KKLTTRTVTGDVLNDDPALDDNLENRAASAGTLASTDISPEDRAMLRDFR
LEVSMLNKLVRRFEETIVEAMSIAAGFAKRSESQNLLLDRHVEDGCPVVK
VADFGLSRQFRGIGTVTGSVAGIMTSETGTYRWMSPEMIRHEPYNDKVDV
YSFAVVLWELFSCEIPFAGMTPVQAAFAVADKHLRPKAESEYAKRVQIPP
AWAALIERCWHRDSHERPRFTEILRVLDEMESCSEWEVPRSLMKEAEVGR
DGVRDEAKNAHTGFHLNRFQVRSLGEDREGHSKSSDGNLGRTGLQHSGSA
PNLALVE*
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spliced messenger RNA

>Ggra4930.t1 ID=Ggra4930.t1|Name=Ggra4930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2274bp|location=Sequence derived from alignment at tig00000157_pilon:211049..213472+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTGCACGAGTTTTCTACCCCGTTGCCCAACGGCATCACCGTGCA
TCATCTCGAGTTGCATAATCTTTCTGTGAGGGAGCAGCGCCCCATCATCG
AGTTTGAATGTACCGGTGATGATGAAGAGCATGAATTCGTGCTCACCGTC
TTCGGCCGCGAACGAGCCGGTTTGTTGGCCGATCTCACTGACTACCTCGA
GTCCATTGCGCTGGGTGTCAAACAAGCCAATATATATTCTTTTCCGAATG
GCGCCGTCATGGACCAGTTCACCCTGGCCGATCCGAATAGGTTGCTGCTG
GAAGATGAAATGCTCGTCAGCATTCATGACACCCTTGTCAAGCTTATTGG
CAACGACGGTGCGTCTTTGTCGCGACGTACTCGCTTGAGAATGCACTTTG
ACAACCATTCACCGCAGGCAAAGGACTCCCTATACAACTACGCTTTGTTA
CGACATCGTGTTCCTATCACCTTGCTCGCTCCGCGATTCGCACCGCGCGC
TTCAATGGTCAGGAGGACCTGGTCGAACATCGCTCTTACCGAGATGGTTG
AGGAGCAGCGACAGGAGCTTGAGAGACAACATAGAAACAGCGAGGCTGTC
ACGGCTGGCTTCGTGCAGCATGCTTTATCCTCCTTACAGGAAGGCGAATT
TCTTCACCACTACTCGTCTCATACAAGATACCGACACAAGTTCAACATTT
CCGATGACCATCTGTACTTGTGCTGGGGTGATTCTTGTGCCGCGCGTCTC
AGTCGATATGCAGGCGTTTTGTTCGGACCCAAGTCTGCCGTTTTTCAAGA
CTTGGGTCCCCGCCTTGTTGATCCAGAGTGGCTATGTTTTTCGCTCGTCA
GTAACCCGGCCGGCCATTCCGCAACAAGTGTTGATACCATTGATCTGGTA
TGTGTATCCATCGATCAGTTGAATCGATGGTTGCTCGGACTACAGTCGCT
CTGCAATCCAGACAACCGCCAATTGTTACATCGACTCACTCTCGACGATA
TAACAAGATTTCGCGTCATCTATAAGATTCGTGCGCATGCTCATGCGAGG
GGACTCACCGTTCGGCGCTATATTTTGAAGAGAGTTGCTGAAGCTGGAAG
GAGGAGAAGCTCGGCCGATGCCAATCGCGCGCAGTTGGATGAGGTGAACC
AACTTGAAGCTGAACTGGCGCGTTTGCATAAGACACTCATTGATTATGCC
CGACGTGAAACGATGCTCAACACCTCGCTGAAAGATTTCCAGGCATCTTG
GGAGGTCAACGTGAATGACGTAGAGTTGGTACATCCCATTGGCCACGGAG
CGTTCTCGGAAATGTGGAAGGGTTTATGGCGCTCCACACCCGTCGCGGTC
AAGAAGCTTACAACAAGAACCGTCACTGGAGACGTTCTTAACGATGACCC
GGCTCTGGACGATAACCTCGAAAACCGTGCTGCTTCAGCTGGTACTCTTG
CATCCACTGATATATCTCCGGAGGATAGGGCGATGTTGAGGGACTTTCGA
CTCGAGGTTTCGATGCTGAACAAGCTTGTTCGCCGCTTTGAGGAAACGAT
CGTGGAGGCAATGTCTATCGCTGCAGGATTTGCGAAACGTAGCGAGTCAC
AGAATCTCCTTCTCGACAGACATGTGGAAGACGGCTGTCCTGTGGTGAAG
GTTGCTGATTTTGGACTGAGCCGACAGTTTCGAGGGATTGGGACTGTTAC
TGGTTCAGTGGCAGGGATCATGACTAGTGAAACTGGCACATATCGTTGGA
TGTCACCTGAAATGATCCGCCACGAACCTTACAATGACAAAGTTGATGTG
TATTCTTTTGCTGTAGTGCTGTGGGAGTTGTTCTCCTGTGAGATTCCGTT
TGCTGGTATGACTCCAGTACAGGCGGCTTTTGCGGTCGCAGATAAGCACC
TTCGACCAAAGGCGGAGTCAGAATACGCGAAACGGGTTCAGATACCACCT
GCATGGGCGGCCCTCATTGAGAGATGTTGGCATCGTGACTCTCATGAGCG
GCCTCGCTTTACTGAAATCCTTCGCGTTTTGGATGAAATGGAGAGTTGTT
CAGAATGGGAGGTCCCTCGATCACTAATGAAAGAGGCAGAGGTAGGTCGA
GATGGGGTCAGAGACGAAGCTAAAAACGCCCATACAGGCTTTCATTTGAA
TCGGTTTCAAGTTCGAAGTTTGGGTGAAGATAGAGAGGGACATTCCAAAA
GCAGTGATGGCAACCTTGGGAGAACCGGTTTGCAGCATTCGGGAAGTGCA
CCGAATTTGGCGCTCGTTGAATGA
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protein sequence of Ggra4930.t1

>Ggra4930.t1 ID=Ggra4930.t1|Name=Ggra4930.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=758bp
MDLHEFSTPLPNGITVHHLELHNLSVREQRPIIEFECTGDDEEHEFVLTV
FGRERAGLLADLTDYLESIALGVKQANIYSFPNGAVMDQFTLADPNRLLL
EDEMLVSIHDTLVKLIGNDGASLSRRTRLRMHFDNHSPQAKDSLYNYALL
RHRVPITLLAPRFAPRASMVRRTWSNIALTEMVEEQRQELERQHRNSEAV
TAGFVQHALSSLQEGEFLHHYSSHTRYRHKFNISDDHLYLCWGDSCAARL
SRYAGVLFGPKSAVFQDLGPRLVDPEWLCFSLVSNPAGHSATSVDTIDLV
CVSIDQLNRWLLGLQSLCNPDNRQLLHRLTLDDITRFRVIYKIRAHAHAR
GLTVRRYILKRVAEAGRRRSSADANRAQLDEVNQLEAELARLHKTLIDYA
RRETMLNTSLKDFQASWEVNVNDVELVHPIGHGAFSEMWKGLWRSTPVAV
KKLTTRTVTGDVLNDDPALDDNLENRAASAGTLASTDISPEDRAMLRDFR
LEVSMLNKLVRRFEETIVEAMSIAAGFAKRSESQNLLLDRHVEDGCPVVK
VADFGLSRQFRGIGTVTGSVAGIMTSETGTYRWMSPEMIRHEPYNDKVDV
YSFAVVLWELFSCEIPFAGMTPVQAAFAVADKHLRPKAESEYAKRVQIPP
AWAALIERCWHRDSHERPRFTEILRVLDEMESCSEWEVPRSLMKEAEVGR
DGVRDEAKNAHTGFHLNRFQVRSLGEDREGHSKSSDGNLGRTGLQHSGSA
PNLALVE*
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mRNA from alignment at tig00000157_pilon:211049..213472+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4930.t1 ID=Ggra4930.t1|Name=Ggra4930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2424bp|location=Sequence derived from alignment at tig00000157_pilon:211049..213472+ (Gracilaria gracilis GNS1m male)
ATGGATCTGCACGAGTTTTCTACCCCGTTGCCCAACGGCATCACCGTGCA
TCATCTCGAGTTGCATAATCTTTCTGTGAGGGAGCAGCGCCCCATCATCG
AGTTTGAATGTACCGGTGATGATGAAGAGCATGAATTCGTGCTCACCGTC
TTCGGCCGCGAACGAGCCGGTTTGTTGGCCGATCTCACTGACTACCTCGA
GTCCATTGCGCTGGGTGTCAAACAAGCCAATATATATTCTTTTCCGAATG
GCGCCGTCATGGACCAGTTCACCCTGGCCGATCCGAATAGGTTGCTGCTG
GAAGATGAAATGCTCGTCAGCATTCATGACACCCTTGTCAAGCTTATTGG
CAACGACGGTGCGTCTTTGTCGCGACGTACTCGCTTGAGAATGCACTTTG
ACAACCATTCACCGCAGGCAAAGGACTCCCTATACAACTACGCTTTGTTA
CGACATCGTGTTCCTATCACCTTGCTCGCTCCGCGATTCGCACCGCGCGC
TTCAATGGTCAGGAGGACCTGGTCGAACATCGCTCTTACCGAGATGGTTG
AGGAGCAGCGACAGGAGCTTGAGAGACAACATAGAAACAGCGAGGCTGTC
ACGGCTGGCTTCGTGCAGCATGCTTTATCCTCCTTACAGGAAGGCGAATT
TCTTCACCACTACTCGTCTCATACAAGATACCGACACAAGTTCAACATTT
CCGATGACCATCTGTACTTGTGCTGGGGTGATTCTTGTGCCGCGCGTCTC
AGTCGATATGCAGGCGTTTTGTTCGGACCCAAGTCTGCCGTTTTTCAAGA
CTTGGGTCCCCGCCTTGTTGATCCAGAGTGGCTATGTTTTTCGCTCGTCA
GTAACCCGGCCGGCCATTCCGCAACAAGTGTTGATACCATTGATCTGGTA
TGTGTATCCATCGATCAGTTGAATCGATGGTTGCTCGGACTACAGTCGCT
CTGCAATCCAGACAACCGCCAATTGTTACATCGACTCACTCTCGACGATA
TAACAAGATTTCGCGTCATCTATAAGATTCGTGCGCATGCTCATGCGAGG
GGACTCACCGTTCGGCGCTATATTTTGAAGAGAGTTGCTGAAGCTGGAAG
GAGGAGAAGCTCGGCCGATGCCAATCGCGCGCAGTTGGATGAGGTGAACC
AACTTGAAGCTGAACTGGCGCGTTTGCATAAGACACTCATTGATTATGCC
CGACGTGAAACGATGCTCAACACCTCGCTGAAAGATTTCCAGGCATCTTG
GGAGGTCAACGTGAATGACGTAGAGTTGGTACATCCCATTGGCCACGGAG
CGTTCTCGGAAATGTGGAAGGGTTTATGGCGCTCCACACCCGTCGCGGTC
AAGAAGCTTACAACAAGAACCGTCACTGGAGACGTTCTTAACGATGACCC
GGCTCTGGACGATAACCTCGAAAACCGTGCTGCTTCAGCTGGTACTCTTG
CATCCACTGATATATCTCCGGAGGATAGGGCGATGTTGAGGGACTTTCGA
CTCGAGGTTTCGATGCTGAACAAGGTGAGACATCCGAATGTAGTTCTGTT
TCTTGGTGCCTGTACCGTGCCACCACAGCTTTGCATTCTAACCGAGTTCT
GTCACGGTGGTAGCTTGTTCGCCGCTTTGAGGAAACGATCGTGGAGGCAA
TGTCTATCGCTGCAGGATTTGCGAAACGTAGCGAGGTATATCGCCCGTGG
TATGAATTATCTGCATGCCTGTCATATCATTCATCGTGATCTAAAGTCAC
AGAATCTCCTTCTCGACAGACATGTGGAAGACGGCTGTCCTGTGGTGAAG
GTTGCTGATTTTGGACTGAGCCGACAGTTTCGAGGGATTGGGACTGTTAC
TGGTTCAGTGGCAGGGATCATGACTAGTGAAACTGGCACATATCGTTGGA
TGTCACCTGAAATGATCCGCCACGAACCTTACAATGACAAAGTTGATGTG
TATTCTTTTGCTGTAGTGCTGTGGGAGTTGTTCTCCTGTGAGATTCCGTT
TGCTGGTATGACTCCAGTACAGGCGGCTTTTGCGGTCGCAGATAAGCACC
TTCGACCAAAGGCGGAGTCAGAATACGCGAAACGGGTTCAGATACCACCT
GCATGGGCGGCCCTCATTGAGAGATGTTGGCATCGTGACTCTCATGAGCG
GCCTCGCTTTACTGAAATCCTTCGCGTTTTGGATGAAATGGAGAGTTGTT
CAGAATGGGAGGTCCCTCGATCACTAATGAAAGAGGCAGAGGTAGGTCGA
GATGGGGTCAGAGACGAAGCTAAAAACGCCCATACAGGCTTTCATTTGAA
TCGGTTTCAAGTTCGAAGTTTGGGTGAAGATAGAGAGGGACATTCCAAAA
GCAGTGATGGCAACCTTGGGAGAACCGGTTTGCAGCATTCGGGAAGTGCA
CCGAATTTGGCGCTCGTTGAATGA
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Coding sequence (CDS) from alignment at tig00000157_pilon:211049..213472+

>Ggra4930.t1 ID=Ggra4930.t1|Name=Ggra4930.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2274bp|location=Sequence derived from alignment at tig00000157_pilon:211049..213472+ (Gracilaria gracilis GNS1m male)
ATGGATCTGCACGAGTTTTCTACCCCGTTGCCCAACGGCATCACCGTGCA
TCATCTCGAGTTGCATAATCTTTCTGTGAGGGAGCAGCGCCCCATCATCG
AGTTTGAATGTACCGGTGATGATGAAGAGCATGAATTCGTGCTCACCGTC
TTCGGCCGCGAACGAGCCGGTTTGTTGGCCGATCTCACTGACTACCTCGA
GTCCATTGCGCTGGGTGTCAAACAAGCCAATATATATTCTTTTCCGAATG
GCGCCGTCATGGACCAGTTCACCCTGGCCGATCCGAATAGGTTGCTGCTG
GAAGATGAAATGCTCGTCAGCATTCATGACACCCTTGTCAAGCTTATTGG
CAACGACGGTGCGTCTTTGTCGCGACGTACTCGCTTGAGAATGCACTTTG
ACAACCATTCACCGCAGGCAAAGGACTCCCTATACAACTACGCTTTGTTA
CGACATCGTGTTCCTATCACCTTGCTCGCTCCGCGATTCGCACCGCGCGC
TTCAATGGTCAGGAGGACCTGGTCGAACATCGCTCTTACCGAGATGGTTG
AGGAGCAGCGACAGGAGCTTGAGAGACAACATAGAAACAGCGAGGCTGTC
ACGGCTGGCTTCGTGCAGCATGCTTTATCCTCCTTACAGGAAGGCGAATT
TCTTCACCACTACTCGTCTCATACAAGATACCGACACAAGTTCAACATTT
CCGATGACCATCTGTACTTGTGCTGGGGTGATTCTTGTGCCGCGCGTCTC
AGTCGATATGCAGGCGTTTTGTTCGGACCCAAGTCTGCCGTTTTTCAAGA
CTTGGGTCCCCGCCTTGTTGATCCAGAGTGGCTATGTTTTTCGCTCGTCA
GTAACCCGGCCGGCCATTCCGCAACAAGTGTTGATACCATTGATCTGGTA
TGTGTATCCATCGATCAGTTGAATCGATGGTTGCTCGGACTACAGTCGCT
CTGCAATCCAGACAACCGCCAATTGTTACATCGACTCACTCTCGACGATA
TAACAAGATTTCGCGTCATCTATAAGATTCGTGCGCATGCTCATGCGAGG
GGACTCACCGTTCGGCGCTATATTTTGAAGAGAGTTGCTGAAGCTGGAAG
GAGGAGAAGCTCGGCCGATGCCAATCGCGCGCAGTTGGATGAGGTGAACC
AACTTGAAGCTGAACTGGCGCGTTTGCATAAGACACTCATTGATTATGCC
CGACGTGAAACGATGCTCAACACCTCGCTGAAAGATTTCCAGGCATCTTG
GGAGGTCAACGTGAATGACGTAGAGTTGGTACATCCCATTGGCCACGGAG
CGTTCTCGGAAATGTGGAAGGGTTTATGGCGCTCCACACCCGTCGCGGTC
AAGAAGCTTACAACAAGAACCGTCACTGGAGACGTTCTTAACGATGACCC
GGCTCTGGACGATAACCTCGAAAACCGTGCTGCTTCAGCTGGTACTCTTG
CATCCACTGATATATCTCCGGAGGATAGGGCGATGTTGAGGGACTTTCGA
CTCGAGGTTTCGATGCTGAACAAGCTTGTTCGCCGCTTTGAGGAAACGAT
CGTGGAGGCAATGTCTATCGCTGCAGGATTTGCGAAACGTAGCGAGTCAC
AGAATCTCCTTCTCGACAGACATGTGGAAGACGGCTGTCCTGTGGTGAAG
GTTGCTGATTTTGGACTGAGCCGACAGTTTCGAGGGATTGGGACTGTTAC
TGGTTCAGTGGCAGGGATCATGACTAGTGAAACTGGCACATATCGTTGGA
TGTCACCTGAAATGATCCGCCACGAACCTTACAATGACAAAGTTGATGTG
TATTCTTTTGCTGTAGTGCTGTGGGAGTTGTTCTCCTGTGAGATTCCGTT
TGCTGGTATGACTCCAGTACAGGCGGCTTTTGCGGTCGCAGATAAGCACC
TTCGACCAAAGGCGGAGTCAGAATACGCGAAACGGGTTCAGATACCACCT
GCATGGGCGGCCCTCATTGAGAGATGTTGGCATCGTGACTCTCATGAGCG
GCCTCGCTTTACTGAAATCCTTCGCGTTTTGGATGAAATGGAGAGTTGTT
CAGAATGGGAGGTCCCTCGATCACTAATGAAAGAGGCAGAGGTAGGTCGA
GATGGGGTCAGAGACGAAGCTAAAAACGCCCATACAGGCTTTCATTTGAA
TCGGTTTCAAGTTCGAAGTTTGGGTGAAGATAGAGAGGGACATTCCAAAA
GCAGTGATGGCAACCTTGGGAGAACCGGTTTGCAGCATTCGGGAAGTGCA
CCGAATTTGGCGCTCGTTGAATGA
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