Ggra4925.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4925.t1
Unique NameGgra4925.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:129884..131107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S199_22V6.1
PFAMsMethyltransf_28
Max annot lvl35493|Streptophyta
Evalue1.19e-47
EggNOG OGs2CMRH@1|root,2QRKD@2759|Eukaryota,37HTZ@33090|Viridiplantae,3G86H@35493|Streptophyta
DescriptionArginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4925Ggra4925Gracilaria gracilis GNS1m malegenetig00000157_pilon 129884..131107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4925.t1.stop1Ggra4925.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 129884..129886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4925.t1.CDS1Ggra4925.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 129884..131107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4925.t1.exon1Ggra4925.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 129884..131107 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4925.t1.start1Ggra4925.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 131105..131107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4925.t1Ggra4925.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 129884..131107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4925.t1 ID=Ggra4925.t1|Name=Ggra4925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp
MRRAFSNRPGAAHAVLLRDYIHDSLYNSRTGYFSNETPPILRHASQFQFN
RVSSKSAYQDALASLMKNIQGWMTPVELFSPYLSRAIANRLERSAPEDGP
INIIEIGAGRGTLAKDILQFWERTPDLIQRVNYVTVEISNVLAKAQESAL
QKWISGGRAKVVNTNALNWFGSESLQIEGHCHVIATEVLDNMPHDLVRDG
EMLEQAEVVSIENGHRHMQWSECTDQEILSTIETYGILENTPAQTWRTAM
QERFEIAIGGGSRNIWVPTASFLLLKTLVAALPRAHLTLADFDSFPGAMP
GLNAPVVQSVRGGAAVVYDDVHSAPFGNVDIMFPTDFQALARGLASFFRK
EEDFSGVVMKQRDFFEEYATRQEIDKSTCQDGYNPILYDFENVSYLLVDH
AKTANRD*
back to top

spliced messenger RNA

>Ggra4925.t1 ID=Ggra4925.t1|Name=Ggra4925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000157_pilon:129884..131107- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACGTGCTTTCTCCAACCGTCCAGGTGCTGCACATGCTGTTCTACT
TCGAGATTATATCCACGATAGCTTATACAATTCGAGGACTGGGTATTTTT
CCAATGAAACACCGCCAATTCTTCGACATGCGAGCCAGTTTCAGTTCAAC
AGGGTTTCGTCGAAATCAGCCTACCAAGATGCCTTGGCATCCTTGATGAA
GAACATTCAGGGATGGATGACACCCGTTGAGCTATTTTCTCCATATCTTT
CTCGTGCGATCGCAAATCGTTTGGAGCGATCTGCTCCAGAAGATGGGCCC
ATCAACATTATCGAGATCGGTGCAGGTCGAGGGACCCTCGCCAAGGATAT
CCTGCAGTTTTGGGAACGCACTCCGGACCTGATCCAAAGGGTGAACTATG
TTACCGTCGAAATATCAAACGTATTGGCCAAGGCTCAGGAAAGCGCTTTG
CAGAAGTGGATCAGCGGGGGAAGGGCTAAAGTTGTCAATACAAATGCCTT
GAACTGGTTCGGTTCTGAGTCTTTGCAGATTGAAGGTCATTGTCACGTAA
TCGCCACTGAAGTGCTGGACAATATGCCACACGATCTTGTGCGTGACGGA
GAAATGCTCGAGCAAGCTGAAGTAGTTTCCATCGAAAACGGACATCGGCA
TATGCAGTGGTCCGAATGTACTGACCAAGAGATCTTGTCCACCATTGAGA
CATACGGGATACTGGAAAACACCCCGGCGCAAACTTGGAGAACTGCAATG
CAAGAGCGATTTGAAATTGCAATCGGCGGTGGAAGCCGCAACATATGGGT
TCCGACGGCCTCGTTCTTGTTGTTAAAGACCCTCGTAGCAGCGCTACCTC
GCGCTCACTTGACACTAGCCGACTTTGACAGTTTTCCAGGAGCTATGCCA
GGGCTTAACGCCCCAGTCGTGCAGAGTGTACGCGGAGGGGCTGCGGTTGT
GTACGATGATGTTCATTCCGCCCCATTTGGAAACGTTGATATAATGTTTC
CTACTGATTTCCAAGCGCTCGCACGCGGTCTCGCATCTTTCTTCAGAAAA
GAAGAAGACTTCTCAGGGGTTGTCATGAAACAGCGAGATTTCTTTGAGGA
GTACGCTACCAGGCAAGAGATAGACAAGAGTACGTGCCAAGATGGATACA
ACCCAATCCTGTACGACTTTGAAAATGTGTCTTACTTATTGGTGGACCAT
GCTAAAACCGCAAACCGTGATTGA
back to top

protein sequence of Ggra4925.t1

>Ggra4925.t1 ID=Ggra4925.t1|Name=Ggra4925.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MRRAFSNRPGAAHAVLLRDYIHDSLYNSRTGYFSNETPPILRHASQFQFN
RVSSKSAYQDALASLMKNIQGWMTPVELFSPYLSRAIANRLERSAPEDGP
INIIEIGAGRGTLAKDILQFWERTPDLIQRVNYVTVEISNVLAKAQESAL
QKWISGGRAKVVNTNALNWFGSESLQIEGHCHVIATEVLDNMPHDLVRDG
EMLEQAEVVSIENGHRHMQWSECTDQEILSTIETYGILENTPAQTWRTAM
QERFEIAIGGGSRNIWVPTASFLLLKTLVAALPRAHLTLADFDSFPGAMP
GLNAPVVQSVRGGAAVVYDDVHSAPFGNVDIMFPTDFQALARGLASFFRK
EEDFSGVVMKQRDFFEEYATRQEIDKSTCQDGYNPILYDFENVSYLLVDH
AKTANRD*
back to top

mRNA from alignment at tig00000157_pilon:129884..131107-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4925.t1 ID=Ggra4925.t1|Name=Ggra4925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000157_pilon:129884..131107- (Gracilaria gracilis GNS1m male)
ATGAGACGTGCTTTCTCCAACCGTCCAGGTGCTGCACATGCTGTTCTACT
TCGAGATTATATCCACGATAGCTTATACAATTCGAGGACTGGGTATTTTT
CCAATGAAACACCGCCAATTCTTCGACATGCGAGCCAGTTTCAGTTCAAC
AGGGTTTCGTCGAAATCAGCCTACCAAGATGCCTTGGCATCCTTGATGAA
GAACATTCAGGGATGGATGACACCCGTTGAGCTATTTTCTCCATATCTTT
CTCGTGCGATCGCAAATCGTTTGGAGCGATCTGCTCCAGAAGATGGGCCC
ATCAACATTATCGAGATCGGTGCAGGTCGAGGGACCCTCGCCAAGGATAT
CCTGCAGTTTTGGGAACGCACTCCGGACCTGATCCAAAGGGTGAACTATG
TTACCGTCGAAATATCAAACGTATTGGCCAAGGCTCAGGAAAGCGCTTTG
CAGAAGTGGATCAGCGGGGGAAGGGCTAAAGTTGTCAATACAAATGCCTT
GAACTGGTTCGGTTCTGAGTCTTTGCAGATTGAAGGTCATTGTCACGTAA
TCGCCACTGAAGTGCTGGACAATATGCCACACGATCTTGTGCGTGACGGA
GAAATGCTCGAGCAAGCTGAAGTAGTTTCCATCGAAAACGGACATCGGCA
TATGCAGTGGTCCGAATGTACTGACCAAGAGATCTTGTCCACCATTGAGA
CATACGGGATACTGGAAAACACCCCGGCGCAAACTTGGAGAACTGCAATG
CAAGAGCGATTTGAAATTGCAATCGGCGGTGGAAGCCGCAACATATGGGT
TCCGACGGCCTCGTTCTTGTTGTTAAAGACCCTCGTAGCAGCGCTACCTC
GCGCTCACTTGACACTAGCCGACTTTGACAGTTTTCCAGGAGCTATGCCA
GGGCTTAACGCCCCAGTCGTGCAGAGTGTACGCGGAGGGGCTGCGGTTGT
GTACGATGATGTTCATTCCGCCCCATTTGGAAACGTTGATATAATGTTTC
CTACTGATTTCCAAGCGCTCGCACGCGGTCTCGCATCTTTCTTCAGAAAA
GAAGAAGACTTCTCAGGGGTTGTCATGAAACAGCGAGATTTCTTTGAGGA
GTACGCTACCAGGCAAGAGATAGACAAGAGTACGTGCCAAGATGGATACA
ACCCAATCCTGTACGACTTTGAAAATGTGTCTTACTTATTGGTGGACCAT
GCTAAAACCGCAAACCGTGATTGA
back to top

Coding sequence (CDS) from alignment at tig00000157_pilon:129884..131107-

>Ggra4925.t1 ID=Ggra4925.t1|Name=Ggra4925.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000157_pilon:129884..131107- (Gracilaria gracilis GNS1m male)
ATGAGACGTGCTTTCTCCAACCGTCCAGGTGCTGCACATGCTGTTCTACT
TCGAGATTATATCCACGATAGCTTATACAATTCGAGGACTGGGTATTTTT
CCAATGAAACACCGCCAATTCTTCGACATGCGAGCCAGTTTCAGTTCAAC
AGGGTTTCGTCGAAATCAGCCTACCAAGATGCCTTGGCATCCTTGATGAA
GAACATTCAGGGATGGATGACACCCGTTGAGCTATTTTCTCCATATCTTT
CTCGTGCGATCGCAAATCGTTTGGAGCGATCTGCTCCAGAAGATGGGCCC
ATCAACATTATCGAGATCGGTGCAGGTCGAGGGACCCTCGCCAAGGATAT
CCTGCAGTTTTGGGAACGCACTCCGGACCTGATCCAAAGGGTGAACTATG
TTACCGTCGAAATATCAAACGTATTGGCCAAGGCTCAGGAAAGCGCTTTG
CAGAAGTGGATCAGCGGGGGAAGGGCTAAAGTTGTCAATACAAATGCCTT
GAACTGGTTCGGTTCTGAGTCTTTGCAGATTGAAGGTCATTGTCACGTAA
TCGCCACTGAAGTGCTGGACAATATGCCACACGATCTTGTGCGTGACGGA
GAAATGCTCGAGCAAGCTGAAGTAGTTTCCATCGAAAACGGACATCGGCA
TATGCAGTGGTCCGAATGTACTGACCAAGAGATCTTGTCCACCATTGAGA
CATACGGGATACTGGAAAACACCCCGGCGCAAACTTGGAGAACTGCAATG
CAAGAGCGATTTGAAATTGCAATCGGCGGTGGAAGCCGCAACATATGGGT
TCCGACGGCCTCGTTCTTGTTGTTAAAGACCCTCGTAGCAGCGCTACCTC
GCGCTCACTTGACACTAGCCGACTTTGACAGTTTTCCAGGAGCTATGCCA
GGGCTTAACGCCCCAGTCGTGCAGAGTGTACGCGGAGGGGCTGCGGTTGT
GTACGATGATGTTCATTCCGCCCCATTTGGAAACGTTGATATAATGTTTC
CTACTGATTTCCAAGCGCTCGCACGCGGTCTCGCATCTTTCTTCAGAAAA
GAAGAAGACTTCTCAGGGGTTGTCATGAAACAGCGAGATTTCTTTGAGGA
GTACGCTACCAGGCAAGAGATAGACAAGAGTACGTGCCAAGATGGATACA
ACCCAATCCTGTACGACTTTGAAAATGTGTCTTACTTATTGGTGGACCAT
GCTAAAACCGCAAACCGTGATTGA
back to top