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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 981085.XP_010110144.1 |
| PFAMs | Vps51 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K20288 |
| Evalue | 1.92e-17 |
| EggNOG OGs | KOG2033@1|root,KOG2033@2759|Eukaryota,37Q61@33090|Viridiplantae,3GB4K@35493|Streptophyta,4JE5N@91835|fabids |
| Description | Conserved oligomeric Golgi complex subunit 1-like |
| COG category | I |
| BRITE | ko00000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4923.t1.start1 | Ggra4923.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000157_pilon 124635..124637 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4923.t1.stop1 | Ggra4923.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000157_pilon 127329..127331 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra4923.t1 ID=Ggra4923.t1|Name=Ggra4923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=899bp MAKPQARASHGVLTTGSVSSEVTHLFRTKRVSDIRAFEAQIRSDAEDKSS ALRDLLGTRYRDILTAADEMIAMRNASVRRVRDGLRDFTVSTNGLKQHFS SKGNENQSETINDDLERRRGVHAVGSRLKHIVDSPEVLYANIESGEIYEA AVRYSLAFENYKQVTSTSGLEGVANRFAELQWKQVNGFSDQILEAAEKKL QTSGHTSQEYARVFVSLILLSENRDIVAILDGMLASRTGLIWNEDQGKQY SDVHLQMKRIASLVRETISCVSDMFWGENGVQTLLLGVNDQAIEEVSRLK DNGALSTACTAWTRNVRGWLEERGNSILASAETSRQLADTLRAIDDAFDY DQWESDCQKALKKSPSFVFDIFKPFIRDRAGVVARECIERTVNKVLEDIE GAWGDIETRAHAGKRIWAVISGKSVGPSIITQETSSSGSLRSESMEIAQI LSSNGQVAEVLGAFEKSVREAVADVQVLTKRIPAVSEDFVRSVRSSLPRI LSSLKERLGSIPTDASSDRLRKDESSYHVFGCTLFVAWLSTAFRNAEGVR RAYQFAEYGKSAEEDLEAYKDFQQTAEQLCSAAYSVWARLLVLQVGEKLL AELVSVKYHEVKMGWSSSITSNKLKERRNDEEPPQYPTTASTPLINFLLQ VNTAANRAGGFALPREAISHLQREIIKMSIRSYKAGLGTESRTTRKPSTV TTDGPEGKRDAMMMQMLFDVQVVQHIFCDMGKGPASISDEENELNNLKSS ISSMVDPNALSNCRAPLQEAVLNYASRTCVLLGLLVQLTPGEGLQVKGSH SAKSAKTSSNLVALAKTVPRFTYLPAPMPSSYSITVGAPGGLNTKAMGML RNQVSSTAATTHRKRDPESSVADYASKVTESVGRFGRGFFESFTRKVT* back to topspliced messenger RNA >Ggra4923.t1 ID=Ggra4923.t1|Name=Ggra4923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2697bp|location=Sequence derived from alignment at tig00000157_pilon:124635..127331+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCAAAGCCTCAGGCCCGCGCTTCGCACGGAGTGCTCACAACGGGCTC GGTTTCATCTGAGGTAACTCATCTGTTCCGTACGAAGCGAGTGTCAGACA TACGGGCATTTGAAGCCCAAATTCGAAGCGATGCTGAAGACAAGTCTAGC GCACTCCGGGACCTGCTCGGTACAAGGTACAGAGATATTCTTACCGCTGC AGATGAAATGATCGCAATGCGTAACGCGAGTGTCAGGAGAGTGCGCGATG GTCTGCGAGATTTCACAGTATCTACGAACGGGCTTAAGCAACACTTCTCC AGCAAAGGAAATGAAAACCAGTCCGAGACTATAAACGATGACCTGGAGCG GCGAAGGGGCGTGCATGCTGTCGGATCAAGACTCAAGCATATTGTGGACT CTCCAGAAGTATTGTACGCCAACATCGAATCTGGGGAGATTTACGAAGCA GCTGTGAGATATTCGCTAGCGTTTGAAAATTATAAACAGGTGACGAGTAC GTCTGGATTGGAAGGAGTGGCAAATAGGTTTGCCGAACTCCAATGGAAGC AAGTGAACGGTTTTAGTGATCAGATTTTGGAAGCAGCAGAGAAGAAGCTT CAAACCTCTGGTCATACATCTCAAGAGTATGCACGCGTGTTTGTGTCTCT TATCCTTCTCTCGGAAAATCGTGACATTGTGGCCATTCTCGACGGAATGT TGGCGAGTAGAACTGGATTGATTTGGAATGAAGATCAAGGGAAACAGTAT TCCGATGTTCATTTGCAAATGAAACGAATAGCTTCTCTTGTACGTGAAAC TATCTCATGCGTGTCCGACATGTTTTGGGGGGAAAACGGTGTCCAAACTC TGTTGCTCGGTGTTAACGACCAAGCCATAGAGGAAGTTTCCAGACTGAAA GATAATGGTGCCTTAAGCACCGCATGTACCGCTTGGACCCGAAATGTAAG GGGTTGGTTGGAGGAACGCGGCAACTCAATTCTTGCGAGCGCTGAGACGT CTCGCCAGCTTGCAGATACTTTGCGTGCGATCGATGATGCCTTCGATTAC GATCAATGGGAAAGTGACTGTCAGAAAGCCTTGAAAAAGTCTCCAAGTTT TGTGTTTGACATATTTAAGCCCTTTATTAGAGACAGAGCTGGGGTTGTTG CACGAGAATGTATAGAACGAACCGTCAACAAAGTCTTGGAAGATATCGAA GGGGCCTGGGGTGACATTGAAACCCGTGCTCATGCGGGAAAAAGAATTTG GGCGGTCATCTCAGGGAAATCGGTAGGTCCAAGCATCATCACACAGGAAA CGAGTAGTAGTGGGTCTCTGAGGTCGGAAAGTATGGAGATAGCTCAAATT CTTTCGTCTAACGGACAGGTCGCAGAAGTGCTTGGTGCCTTTGAAAAGTC TGTGAGGGAGGCAGTTGCAGATGTCCAAGTTCTAACAAAACGAATACCTG CTGTTTCTGAAGACTTTGTCCGATCAGTGAGGTCAAGTCTTCCACGAATT TTAAGCAGTCTGAAGGAGCGGCTAGGTTCTATCCCCACTGACGCATCAAG TGATCGTCTAAGGAAAGATGAGTCATCTTATCATGTTTTTGGATGTACTC TGTTTGTGGCTTGGTTATCTACCGCATTTAGAAATGCTGAAGGCGTGAGA AGAGCATACCAATTTGCTGAATATGGCAAGTCAGCAGAAGAGGATCTAGA AGCCTACAAGGATTTCCAGCAGACGGCAGAACAGCTGTGTTCAGCAGCGT ACAGTGTATGGGCAAGACTTCTTGTTCTACAGGTGGGAGAGAAGCTACTC GCTGAGCTTGTCTCCGTGAAATATCACGAAGTCAAGATGGGTTGGTCTTC GAGCATTACCTCGAATAAGCTCAAAGAACGGCGCAATGACGAAGAGCCGC CGCAGTATCCCACCACTGCTTCGACACCATTGATAAACTTCCTTTTGCAA GTTAACACCGCCGCAAATCGAGCTGGTGGCTTTGCGCTCCCGCGGGAGGC AATTTCTCACCTTCAAAGGGAGATTATCAAGATGTCAATTCGATCGTATA AAGCGGGATTGGGCACTGAATCCAGAACCACGAGAAAACCGAGTACTGTA ACCACCGATGGGCCTGAAGGAAAGAGAGACGCAATGATGATGCAGATGTT GTTTGACGTACAAGTTGTGCAGCATATTTTCTGCGACATGGGGAAAGGGC CTGCATCTATTTCCGATGAAGAGAATGAACTGAACAATCTAAAGTCTTCG ATTTCTTCGATGGTGGATCCGAATGCTTTAAGTAATTGCAGAGCGCCACT TCAAGAAGCTGTATTGAATTATGCTTCCCGAACCTGCGTTTTGCTCGGTC TACTTGTGCAACTCACACCTGGTGAAGGCCTGCAAGTCAAGGGTTCTCAT TCTGCGAAGAGCGCGAAGACATCAAGCAATCTTGTTGCACTTGCCAAAAC AGTCCCGCGTTTCACATACCTTCCAGCACCTATGCCTTCATCTTACTCAA TAACTGTAGGAGCCCCAGGCGGCCTCAACACAAAAGCAATGGGAATGCTG CGAAACCAGGTGAGCAGCACAGCAGCAACCACGCATAGAAAGAGGGATCC GGAGTCGTCTGTAGCAGACTACGCATCCAAGGTGACAGAAAGTGTTGGCC GATTTGGCAGAGGGTTCTTCGAATCTTTCACAAGGAAGGTTACATAA back to topprotein sequence of Ggra4923.t1 >Ggra4923.t1 ID=Ggra4923.t1|Name=Ggra4923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=899bp
MAKPQARASHGVLTTGSVSSEVTHLFRTKRVSDIRAFEAQIRSDAEDKSS ALRDLLGTRYRDILTAADEMIAMRNASVRRVRDGLRDFTVSTNGLKQHFS SKGNENQSETINDDLERRRGVHAVGSRLKHIVDSPEVLYANIESGEIYEA AVRYSLAFENYKQVTSTSGLEGVANRFAELQWKQVNGFSDQILEAAEKKL QTSGHTSQEYARVFVSLILLSENRDIVAILDGMLASRTGLIWNEDQGKQY SDVHLQMKRIASLVRETISCVSDMFWGENGVQTLLLGVNDQAIEEVSRLK DNGALSTACTAWTRNVRGWLEERGNSILASAETSRQLADTLRAIDDAFDY DQWESDCQKALKKSPSFVFDIFKPFIRDRAGVVARECIERTVNKVLEDIE GAWGDIETRAHAGKRIWAVISGKSVGPSIITQETSSSGSLRSESMEIAQI LSSNGQVAEVLGAFEKSVREAVADVQVLTKRIPAVSEDFVRSVRSSLPRI LSSLKERLGSIPTDASSDRLRKDESSYHVFGCTLFVAWLSTAFRNAEGVR RAYQFAEYGKSAEEDLEAYKDFQQTAEQLCSAAYSVWARLLVLQVGEKLL AELVSVKYHEVKMGWSSSITSNKLKERRNDEEPPQYPTTASTPLINFLLQ VNTAANRAGGFALPREAISHLQREIIKMSIRSYKAGLGTESRTTRKPSTV TTDGPEGKRDAMMMQMLFDVQVVQHIFCDMGKGPASISDEENELNNLKSS ISSMVDPNALSNCRAPLQEAVLNYASRTCVLLGLLVQLTPGEGLQVKGSH SAKSAKTSSNLVALAKTVPRFTYLPAPMPSSYSITVGAPGGLNTKAMGML RNQVSSTAATTHRKRDPESSVADYASKVTESVGRFGRGFFESFTRKVT* back to topmRNA from alignment at tig00000157_pilon:124635..127331+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra4923.t1 ID=Ggra4923.t1|Name=Ggra4923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2697bp|location=Sequence derived from alignment at tig00000157_pilon:124635..127331+ (Gracilaria gracilis GNS1m male) ATGGCAAAGCCTCAGGCCCGCGCTTCGCACGGAGTGCTCACAACGGGCTC
GGTTTCATCTGAGGTAACTCATCTGTTCCGTACGAAGCGAGTGTCAGACA
TACGGGCATTTGAAGCCCAAATTCGAAGCGATGCTGAAGACAAGTCTAGC
GCACTCCGGGACCTGCTCGGTACAAGGTACAGAGATATTCTTACCGCTGC
AGATGAAATGATCGCAATGCGTAACGCGAGTGTCAGGAGAGTGCGCGATG
GTCTGCGAGATTTCACAGTATCTACGAACGGGCTTAAGCAACACTTCTCC
AGCAAAGGAAATGAAAACCAGTCCGAGACTATAAACGATGACCTGGAGCG
GCGAAGGGGCGTGCATGCTGTCGGATCAAGACTCAAGCATATTGTGGACT
CTCCAGAAGTATTGTACGCCAACATCGAATCTGGGGAGATTTACGAAGCA
GCTGTGAGATATTCGCTAGCGTTTGAAAATTATAAACAGGTGACGAGTAC
GTCTGGATTGGAAGGAGTGGCAAATAGGTTTGCCGAACTCCAATGGAAGC
AAGTGAACGGTTTTAGTGATCAGATTTTGGAAGCAGCAGAGAAGAAGCTT
CAAACCTCTGGTCATACATCTCAAGAGTATGCACGCGTGTTTGTGTCTCT
TATCCTTCTCTCGGAAAATCGTGACATTGTGGCCATTCTCGACGGAATGT
TGGCGAGTAGAACTGGATTGATTTGGAATGAAGATCAAGGGAAACAGTAT
TCCGATGTTCATTTGCAAATGAAACGAATAGCTTCTCTTGTACGTGAAAC
TATCTCATGCGTGTCCGACATGTTTTGGGGGGAAAACGGTGTCCAAACTC
TGTTGCTCGGTGTTAACGACCAAGCCATAGAGGAAGTTTCCAGACTGAAA
GATAATGGTGCCTTAAGCACCGCATGTACCGCTTGGACCCGAAATGTAAG
GGGTTGGTTGGAGGAACGCGGCAACTCAATTCTTGCGAGCGCTGAGACGT
CTCGCCAGCTTGCAGATACTTTGCGTGCGATCGATGATGCCTTCGATTAC
GATCAATGGGAAAGTGACTGTCAGAAAGCCTTGAAAAAGTCTCCAAGTTT
TGTGTTTGACATATTTAAGCCCTTTATTAGAGACAGAGCTGGGGTTGTTG
CACGAGAATGTATAGAACGAACCGTCAACAAAGTCTTGGAAGATATCGAA
GGGGCCTGGGGTGACATTGAAACCCGTGCTCATGCGGGAAAAAGAATTTG
GGCGGTCATCTCAGGGAAATCGGTAGGTCCAAGCATCATCACACAGGAAA
CGAGTAGTAGTGGGTCTCTGAGGTCGGAAAGTATGGAGATAGCTCAAATT
CTTTCGTCTAACGGACAGGTCGCAGAAGTGCTTGGTGCCTTTGAAAAGTC
TGTGAGGGAGGCAGTTGCAGATGTCCAAGTTCTAACAAAACGAATACCTG
CTGTTTCTGAAGACTTTGTCCGATCAGTGAGGTCAAGTCTTCCACGAATT
TTAAGCAGTCTGAAGGAGCGGCTAGGTTCTATCCCCACTGACGCATCAAG
TGATCGTCTAAGGAAAGATGAGTCATCTTATCATGTTTTTGGATGTACTC
TGTTTGTGGCTTGGTTATCTACCGCATTTAGAAATGCTGAAGGCGTGAGA
AGAGCATACCAATTTGCTGAATATGGCAAGTCAGCAGAAGAGGATCTAGA
AGCCTACAAGGATTTCCAGCAGACGGCAGAACAGCTGTGTTCAGCAGCGT
ACAGTGTATGGGCAAGACTTCTTGTTCTACAGGTGGGAGAGAAGCTACTC
GCTGAGCTTGTCTCCGTGAAATATCACGAAGTCAAGATGGGTTGGTCTTC
GAGCATTACCTCGAATAAGCTCAAAGAACGGCGCAATGACGAAGAGCCGC
CGCAGTATCCCACCACTGCTTCGACACCATTGATAAACTTCCTTTTGCAA
GTTAACACCGCCGCAAATCGAGCTGGTGGCTTTGCGCTCCCGCGGGAGGC
AATTTCTCACCTTCAAAGGGAGATTATCAAGATGTCAATTCGATCGTATA
AAGCGGGATTGGGCACTGAATCCAGAACCACGAGAAAACCGAGTACTGTA
ACCACCGATGGGCCTGAAGGAAAGAGAGACGCAATGATGATGCAGATGTT
GTTTGACGTACAAGTTGTGCAGCATATTTTCTGCGACATGGGGAAAGGGC
CTGCATCTATTTCCGATGAAGAGAATGAACTGAACAATCTAAAGTCTTCG
ATTTCTTCGATGGTGGATCCGAATGCTTTAAGTAATTGCAGAGCGCCACT
TCAAGAAGCTGTATTGAATTATGCTTCCCGAACCTGCGTTTTGCTCGGTC
TACTTGTGCAACTCACACCTGGTGAAGGCCTGCAAGTCAAGGGTTCTCAT
TCTGCGAAGAGCGCGAAGACATCAAGCAATCTTGTTGCACTTGCCAAAAC
AGTCCCGCGTTTCACATACCTTCCAGCACCTATGCCTTCATCTTACTCAA
TAACTGTAGGAGCCCCAGGCGGCCTCAACACAAAAGCAATGGGAATGCTG
CGAAACCAGGTGAGCAGCACAGCAGCAACCACGCATAGAAAGAGGGATCC
GGAGTCGTCTGTAGCAGACTACGCATCCAAGGTGACAGAAAGTGTTGGCC
GATTTGGCAGAGGGTTCTTCGAATCTTTCACAAGGAAGGTTACATAA back to topCoding sequence (CDS) from alignment at tig00000157_pilon:124635..127331+ >Ggra4923.t1 ID=Ggra4923.t1|Name=Ggra4923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2697bp|location=Sequence derived from alignment at tig00000157_pilon:124635..127331+ (Gracilaria gracilis GNS1m male) ATGGCAAAGCCTCAGGCCCGCGCTTCGCACGGAGTGCTCACAACGGGCTC GGTTTCATCTGAGGTAACTCATCTGTTCCGTACGAAGCGAGTGTCAGACA TACGGGCATTTGAAGCCCAAATTCGAAGCGATGCTGAAGACAAGTCTAGC GCACTCCGGGACCTGCTCGGTACAAGGTACAGAGATATTCTTACCGCTGC AGATGAAATGATCGCAATGCGTAACGCGAGTGTCAGGAGAGTGCGCGATG GTCTGCGAGATTTCACAGTATCTACGAACGGGCTTAAGCAACACTTCTCC AGCAAAGGAAATGAAAACCAGTCCGAGACTATAAACGATGACCTGGAGCG GCGAAGGGGCGTGCATGCTGTCGGATCAAGACTCAAGCATATTGTGGACT CTCCAGAAGTATTGTACGCCAACATCGAATCTGGGGAGATTTACGAAGCA GCTGTGAGATATTCGCTAGCGTTTGAAAATTATAAACAGGTGACGAGTAC GTCTGGATTGGAAGGAGTGGCAAATAGGTTTGCCGAACTCCAATGGAAGC AAGTGAACGGTTTTAGTGATCAGATTTTGGAAGCAGCAGAGAAGAAGCTT CAAACCTCTGGTCATACATCTCAAGAGTATGCACGCGTGTTTGTGTCTCT TATCCTTCTCTCGGAAAATCGTGACATTGTGGCCATTCTCGACGGAATGT TGGCGAGTAGAACTGGATTGATTTGGAATGAAGATCAAGGGAAACAGTAT TCCGATGTTCATTTGCAAATGAAACGAATAGCTTCTCTTGTACGTGAAAC TATCTCATGCGTGTCCGACATGTTTTGGGGGGAAAACGGTGTCCAAACTC TGTTGCTCGGTGTTAACGACCAAGCCATAGAGGAAGTTTCCAGACTGAAA GATAATGGTGCCTTAAGCACCGCATGTACCGCTTGGACCCGAAATGTAAG GGGTTGGTTGGAGGAACGCGGCAACTCAATTCTTGCGAGCGCTGAGACGT CTCGCCAGCTTGCAGATACTTTGCGTGCGATCGATGATGCCTTCGATTAC GATCAATGGGAAAGTGACTGTCAGAAAGCCTTGAAAAAGTCTCCAAGTTT TGTGTTTGACATATTTAAGCCCTTTATTAGAGACAGAGCTGGGGTTGTTG CACGAGAATGTATAGAACGAACCGTCAACAAAGTCTTGGAAGATATCGAA GGGGCCTGGGGTGACATTGAAACCCGTGCTCATGCGGGAAAAAGAATTTG GGCGGTCATCTCAGGGAAATCGGTAGGTCCAAGCATCATCACACAGGAAA CGAGTAGTAGTGGGTCTCTGAGGTCGGAAAGTATGGAGATAGCTCAAATT CTTTCGTCTAACGGACAGGTCGCAGAAGTGCTTGGTGCCTTTGAAAAGTC TGTGAGGGAGGCAGTTGCAGATGTCCAAGTTCTAACAAAACGAATACCTG CTGTTTCTGAAGACTTTGTCCGATCAGTGAGGTCAAGTCTTCCACGAATT TTAAGCAGTCTGAAGGAGCGGCTAGGTTCTATCCCCACTGACGCATCAAG TGATCGTCTAAGGAAAGATGAGTCATCTTATCATGTTTTTGGATGTACTC TGTTTGTGGCTTGGTTATCTACCGCATTTAGAAATGCTGAAGGCGTGAGA AGAGCATACCAATTTGCTGAATATGGCAAGTCAGCAGAAGAGGATCTAGA AGCCTACAAGGATTTCCAGCAGACGGCAGAACAGCTGTGTTCAGCAGCGT ACAGTGTATGGGCAAGACTTCTTGTTCTACAGGTGGGAGAGAAGCTACTC GCTGAGCTTGTCTCCGTGAAATATCACGAAGTCAAGATGGGTTGGTCTTC GAGCATTACCTCGAATAAGCTCAAAGAACGGCGCAATGACGAAGAGCCGC CGCAGTATCCCACCACTGCTTCGACACCATTGATAAACTTCCTTTTGCAA GTTAACACCGCCGCAAATCGAGCTGGTGGCTTTGCGCTCCCGCGGGAGGC AATTTCTCACCTTCAAAGGGAGATTATCAAGATGTCAATTCGATCGTATA AAGCGGGATTGGGCACTGAATCCAGAACCACGAGAAAACCGAGTACTGTA ACCACCGATGGGCCTGAAGGAAAGAGAGACGCAATGATGATGCAGATGTT GTTTGACGTACAAGTTGTGCAGCATATTTTCTGCGACATGGGGAAAGGGC CTGCATCTATTTCCGATGAAGAGAATGAACTGAACAATCTAAAGTCTTCG ATTTCTTCGATGGTGGATCCGAATGCTTTAAGTAATTGCAGAGCGCCACT TCAAGAAGCTGTATTGAATTATGCTTCCCGAACCTGCGTTTTGCTCGGTC TACTTGTGCAACTCACACCTGGTGAAGGCCTGCAAGTCAAGGGTTCTCAT TCTGCGAAGAGCGCGAAGACATCAAGCAATCTTGTTGCACTTGCCAAAAC AGTCCCGCGTTTCACATACCTTCCAGCACCTATGCCTTCATCTTACTCAA TAACTGTAGGAGCCCCAGGCGGCCTCAACACAAAAGCAATGGGAATGCTG CGAAACCAGGTGAGCAGCACAGCAGCAACCACGCATAGAAAGAGGGATCC GGAGTCGTCTGTAGCAGACTACGCATCCAAGGTGACAGAAAGTGTTGGCC GATTTGGCAGAGGGTTCTTCGAATCTTTCACAAGGAAGGTTACATAA back to top
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