Ggra4911.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4911.t1
Unique NameGgra4911.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:12862..13880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4911Ggra4911Gracilaria gracilis GNS1m malegenetig00000157_pilon 12862..13880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4911.t1Ggra4911.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 12862..13880 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4911.t1.stop1Ggra4911.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 12862..12864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4911.t1.CDS1Ggra4911.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 12862..13510 -
Ggra4911.t1.CDS2Ggra4911.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000157_pilon 13852..13880 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4911.t1.exon1Ggra4911.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 12862..13510 -
Ggra4911.t1.exon2Ggra4911.t1.exon2Gracilaria gracilis GNS1m maleexontig00000157_pilon 13852..13880 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4911.t1.intron1Ggra4911.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000157_pilon 13511..13851 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4911.t1.start1Ggra4911.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 13878..13880 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4911.t1 ID=Ggra4911.t1|Name=Ggra4911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MPPPSCQHPCPLCSVPNATAFALAVPQKLAMFLRQVSLEDMSKAIVDMVA
DAFGGETAEGMLHMRSILDPTVWEAVAAVLHGHARPTASSERAGALLDFV
MESCVPEDGWTIQVTVGLTGPPALPFLGGVVLQSMNDDWMLYRRYIRNLR
LARATMQNLTRQGRQAEVWERARAVLLCTSFDRSYLSLLPTQVVESVLIP
WLLFSEGCGVRRERINTLTSREEDL*
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spliced messenger RNA

>Ggra4911.t1 ID=Ggra4911.t1|Name=Ggra4911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000157_pilon:12862..13880- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCGCCGTCATGTCAGCACCCTTGTCCTCTCTGCTCCGTTCCCAA
TGCCACCGCTTTCGCGCTCGCTGTGCCGCAGAAACTGGCCATGTTTCTGC
GCCAAGTGTCGTTAGAGGACATGTCAAAGGCCATAGTGGACATGGTTGCT
GATGCTTTTGGCGGCGAGACCGCGGAAGGCATGCTGCACATGAGAAGCAT
CCTTGATCCTACAGTATGGGAGGCGGTAGCGGCAGTTTTGCATGGTCACG
CTCGTCCCACAGCAAGTTCGGAACGGGCCGGCGCTCTTCTTGATTTCGTC
ATGGAATCGTGCGTTCCAGAAGATGGGTGGACGATCCAAGTTACAGTAGG
CTTGACTGGTCCTCCTGCTCTACCTTTCCTGGGTGGTGTGGTGTTGCAGA
GTATGAACGATGATTGGATGTTGTATCGGAGGTACATTCGAAACTTGCGA
CTTGCTCGGGCCACAATGCAAAACCTGACACGGCAGGGGCGTCAAGCGGA
AGTTTGGGAGCGAGCCAGAGCTGTACTACTCTGCACTAGTTTTGATCGCA
GTTACCTATCCCTTTTGCCTACGCAGGTTGTCGAAAGCGTGTTGATCCCT
TGGCTACTTTTCAGTGAAGGATGTGGGGTTAGAAGAGAGAGGATCAATAC
CTTGACATCGCGCGAAGAGGATCTGTAA
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protein sequence of Ggra4911.t1

>Ggra4911.t1 ID=Ggra4911.t1|Name=Ggra4911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MPPPSCQHPCPLCSVPNATAFALAVPQKLAMFLRQVSLEDMSKAIVDMVA
DAFGGETAEGMLHMRSILDPTVWEAVAAVLHGHARPTASSERAGALLDFV
MESCVPEDGWTIQVTVGLTGPPALPFLGGVVLQSMNDDWMLYRRYIRNLR
LARATMQNLTRQGRQAEVWERARAVLLCTSFDRSYLSLLPTQVVESVLIP
WLLFSEGCGVRRERINTLTSREEDL*
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mRNA from alignment at tig00000157_pilon:12862..13880-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4911.t1 ID=Ggra4911.t1|Name=Ggra4911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1019bp|location=Sequence derived from alignment at tig00000157_pilon:12862..13880- (Gracilaria gracilis GNS1m male)
ATGCCACCGCCGTCATGTCAGCACCCTTGGTATGTTCATACAACATGTTC
GACTCCTTGATCTGTGCTCTCAAAACCACCGTACCGCCATCAACGCCGCC
CATTACTTCGCTGGAACAACCATTGTCAACTGAACCGTCCTACGAGCAGT
TTCCATACGATAAGGCCATCTTGTTGAACACACATCAACTTATTTTTCAC
TCACAACCACAACAACACGATCCCCTTCATGTCGCGTTCTCAACCTCTAC
TTCCATATGCTTCAACGTGCTCCCCAGATCAAGGAGGCATCTGCAAGAAA
ACGAATTCATATGGCATGTGGTCAACTCCCGTTCACTAACAGTCCCCATT
CATCTTCAAGGTCTTCTAAGTCCTCTCTGCTCCGTTCCCAATGCCACCGC
TTTCGCGCTCGCTGTGCCGCAGAAACTGGCCATGTTTCTGCGCCAAGTGT
CGTTAGAGGACATGTCAAAGGCCATAGTGGACATGGTTGCTGATGCTTTT
GGCGGCGAGACCGCGGAAGGCATGCTGCACATGAGAAGCATCCTTGATCC
TACAGTATGGGAGGCGGTAGCGGCAGTTTTGCATGGTCACGCTCGTCCCA
CAGCAAGTTCGGAACGGGCCGGCGCTCTTCTTGATTTCGTCATGGAATCG
TGCGTTCCAGAAGATGGGTGGACGATCCAAGTTACAGTAGGCTTGACTGG
TCCTCCTGCTCTACCTTTCCTGGGTGGTGTGGTGTTGCAGAGTATGAACG
ATGATTGGATGTTGTATCGGAGGTACATTCGAAACTTGCGACTTGCTCGG
GCCACAATGCAAAACCTGACACGGCAGGGGCGTCAAGCGGAAGTTTGGGA
GCGAGCCAGAGCTGTACTACTCTGCACTAGTTTTGATCGCAGTTACCTAT
CCCTTTTGCCTACGCAGGTTGTCGAAAGCGTGTTGATCCCTTGGCTACTT
TTCAGTGAAGGATGTGGGGTTAGAAGAGAGAGGATCAATACCTTGACATC
GCGCGAAGAGGATCTGTAA
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Coding sequence (CDS) from alignment at tig00000157_pilon:12862..13880-

>Ggra4911.t1 ID=Ggra4911.t1|Name=Ggra4911.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000157_pilon:12862..13880- (Gracilaria gracilis GNS1m male)
ATGCCACCGCCGTCATGTCAGCACCCTTGTCCTCTCTGCTCCGTTCCCAA
TGCCACCGCTTTCGCGCTCGCTGTGCCGCAGAAACTGGCCATGTTTCTGC
GCCAAGTGTCGTTAGAGGACATGTCAAAGGCCATAGTGGACATGGTTGCT
GATGCTTTTGGCGGCGAGACCGCGGAAGGCATGCTGCACATGAGAAGCAT
CCTTGATCCTACAGTATGGGAGGCGGTAGCGGCAGTTTTGCATGGTCACG
CTCGTCCCACAGCAAGTTCGGAACGGGCCGGCGCTCTTCTTGATTTCGTC
ATGGAATCGTGCGTTCCAGAAGATGGGTGGACGATCCAAGTTACAGTAGG
CTTGACTGGTCCTCCTGCTCTACCTTTCCTGGGTGGTGTGGTGTTGCAGA
GTATGAACGATGATTGGATGTTGTATCGGAGGTACATTCGAAACTTGCGA
CTTGCTCGGGCCACAATGCAAAACCTGACACGGCAGGGGCGTCAAGCGGA
AGTTTGGGAGCGAGCCAGAGCTGTACTACTCTGCACTAGTTTTGATCGCA
GTTACCTATCCCTTTTGCCTACGCAGGTTGTCGAAAGCGTGTTGATCCCT
TGGCTACTTTTCAGTGAAGGATGTGGGGTTAGAAGAGAGAGGATCAATAC
CTTGACATCGCGCGAAGAGGATCTGTAA
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