Ggra4892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4892.t1
Unique Name	Ggra4892.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000856_pilon	contig	tig00000856_pilon:196553..197686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	746128.CADAFUBP00008336
PFAMs	Ank_2
Max annot lvl	4751\|Fungi
Evalue	0.000429
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota,38KFY@33154\|Opisthokonta,3PNB7@4751\|Fungi,3R7F1@4890\|Ascomycota,20QAW@147545\|Eurotiomycetes,3SBRH@5042\|Eurotiales
Description	Ankyrin repeat
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4892	Ggra4892	Gracilaria gracilis GNS1m male	gene	tig00000856_pilon 196553..197686 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4892.t1.start1	Ggra4892.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000856_pilon 196553..196555 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4892.t1.CDS1	Ggra4892.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000856_pilon 196553..197686 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4892.t1.exon1	Ggra4892.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000856_pilon 196553..197686 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4892.t1.stop1	Ggra4892.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000856_pilon 197684..197686 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4892.t1	Ggra4892.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000856_pilon 196553..197686 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000856_pilon:196553..197686+
coding sequence from alignment at tig00000856_pilon:196553..197686+

mRNA sequence

>Ggra4892.t1 ID=Ggra4892.t1|Name=Ggra4892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MSDFEQLMEAISVRKLVKVLELLSNGLDIKRKDSQGRTPLILAIIHEDER
IVEVLLNAGADLEGRDYNGRTALLVAAYNMCCALSIVLLDEGAQVDPKDW
AGYSPLIYAADNDHEELVAVLLKHNADVSIRNVQGNTALYYALEKRNPQI
VEMLWLAGADPRGTRFESILDMDTATRPMENRESSGRNSCRRADDKDMEL
VRFMVLAKRSEDGCYRMTYGDAVSEVTHSLQKQIDRQNAHDFVDPGFVNC
ACASVDSEYGISIEKFDSVLRQLKAFYESPERCEVRHEFRKSFREALRVQ
AMLQRHFAKYLLHAAFERSSTEVNEEAAGEHGLFARNYAWDEEEVEDLLT
EHGSADQFIDEENFIRVGLKIAFGERV*

spliced messenger RNA

>Ggra4892.t1 ID=Ggra4892.t1|Name=Ggra4892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000856_pilon:196553..197686+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACTTCGAACAACTAATGGAAGCCATATCGGTCCGAAAGCTGGT
CAAAGTTCTGGAGTTGCTTTCGAACGGTCTCGACATCAAACGTAAAGACA
GCCAAGGTCGTACACCTTTGATACTTGCGATCATTCACGAGGACGAGCGA
ATCGTTGAGGTGCTGCTCAACGCAGGAGCTGACTTGGAGGGCAGAGATTA
CAATGGCCGTACTGCTTTGTTGGTTGCCGCGTATAACATGTGTTGCGCAT
TGTCTATCGTTCTGCTGGATGAGGGTGCTCAAGTGGACCCCAAAGACTGG
GCGGGGTATAGTCCGTTGATTTATGCAGCGGATAACGACCACGAAGAACT
TGTTGCCGTGCTTCTAAAGCACAACGCCGATGTGAGCATTCGAAACGTAC
AAGGAAACACGGCGTTGTACTACGCATTGGAAAAGAGGAACCCACAAATC
GTGGAAATGTTGTGGCTTGCAGGTGCAGACCCTCGCGGGACTCGGTTTGA
GTCGATTTTAGATATGGACACAGCTACCAGACCAATGGAGAATCGCGAAT
CCAGTGGGAGGAATTCTTGCAGGAGAGCAGATGATAAAGATATGGAACTC
GTGCGCTTTATGGTTCTAGCAAAAAGGTCGGAAGACGGGTGCTACAGGAT
GACGTACGGAGACGCTGTTAGTGAAGTGACGCATTCGTTGCAAAAACAAA
TTGATAGACAGAATGCACATGATTTTGTTGACCCGGGATTCGTGAACTGC
GCATGCGCTAGTGTGGACTCAGAATATGGAATAAGCATTGAGAAGTTTGA
TTCAGTGTTGAGACAGTTGAAAGCTTTCTATGAATCGCCTGAAAGGTGTG
AAGTGCGCCATGAATTTCGAAAGAGTTTTCGCGAAGCGCTGAGAGTGCAA
GCAATGTTGCAAAGACATTTCGCCAAATATTTGTTACATGCTGCATTTGA
GAGGTCGAGTACAGAGGTTAACGAGGAAGCAGCCGGGGAGCATGGGCTTT
TTGCTCGTAACTACGCTTGGGACGAGGAAGAAGTTGAAGATTTGCTTACG
GAACATGGGTCTGCAGATCAGTtcattgacgaagaaaacttcattagagt
aggcctgaagatagcgtttggggaacgagtgtga

protein sequence of Ggra4892.t1

>Ggra4892.t1 ID=Ggra4892.t1|Name=Ggra4892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MSDFEQLMEAISVRKLVKVLELLSNGLDIKRKDSQGRTPLILAIIHEDER
IVEVLLNAGADLEGRDYNGRTALLVAAYNMCCALSIVLLDEGAQVDPKDW
AGYSPLIYAADNDHEELVAVLLKHNADVSIRNVQGNTALYYALEKRNPQI
VEMLWLAGADPRGTRFESILDMDTATRPMENRESSGRNSCRRADDKDMEL
VRFMVLAKRSEDGCYRMTYGDAVSEVTHSLQKQIDRQNAHDFVDPGFVNC
ACASVDSEYGISIEKFDSVLRQLKAFYESPERCEVRHEFRKSFREALRVQ
AMLQRHFAKYLLHAAFERSSTEVNEEAAGEHGLFARNYAWDEEEVEDLLT
EHGSADQFIDEENFIRVGLKIAFGERV*

mRNA from alignment at tig00000856_pilon:196553..197686+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4892.t1 ID=Ggra4892.t1|Name=Ggra4892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000856_pilon:196553..197686+ (Gracilaria gracilis GNS1m male)
ATGAGCGACTTCGAACAACTAATGGAAGCCATATCGGTCCGAAAGCTGGT
CAAAGTTCTGGAGTTGCTTTCGAACGGTCTCGACATCAAACGTAAAGACA
GCCAAGGTCGTACACCTTTGATACTTGCGATCATTCACGAGGACGAGCGA
ATCGTTGAGGTGCTGCTCAACGCAGGAGCTGACTTGGAGGGCAGAGATTA
CAATGGCCGTACTGCTTTGTTGGTTGCCGCGTATAACATGTGTTGCGCAT
TGTCTATCGTTCTGCTGGATGAGGGTGCTCAAGTGGACCCCAAAGACTGG
GCGGGGTATAGTCCGTTGATTTATGCAGCGGATAACGACCACGAAGAACT
TGTTGCCGTGCTTCTAAAGCACAACGCCGATGTGAGCATTCGAAACGTAC
AAGGAAACACGGCGTTGTACTACGCATTGGAAAAGAGGAACCCACAAATC
GTGGAAATGTTGTGGCTTGCAGGTGCAGACCCTCGCGGGACTCGGTTTGA
GTCGATTTTAGATATGGACACAGCTACCAGACCAATGGAGAATCGCGAAT
CCAGTGGGAGGAATTCTTGCAGGAGAGCAGATGATAAAGATATGGAACTC
GTGCGCTTTATGGTTCTAGCAAAAAGGTCGGAAGACGGGTGCTACAGGAT
GACGTACGGAGACGCTGTTAGTGAAGTGACGCATTCGTTGCAAAAACAAA
TTGATAGACAGAATGCACATGATTTTGTTGACCCGGGATTCGTGAACTGC
GCATGCGCTAGTGTGGACTCAGAATATGGAATAAGCATTGAGAAGTTTGA
TTCAGTGTTGAGACAGTTGAAAGCTTTCTATGAATCGCCTGAAAGGTGTG
AAGTGCGCCATGAATTTCGAAAGAGTTTTCGCGAAGCGCTGAGAGTGCAA
GCAATGTTGCAAAGACATTTCGCCAAATATTTGTTACATGCTGCATTTGA
GAGGTCGAGTACAGAGGTTAACGAGGAAGCAGCCGGGGAGCATGGGCTTT
TTGCTCGTAACTACGCTTGGGACGAGGAAGAAGTTGAAGATTTGCTTACG
GAACATGGGTCTGCAGATCAGTtcattgacgaagaaaacttcattagagt
aggcctgaagatagcgtttggggaacgagtgtga

Coding sequence (CDS) from alignment at tig00000856_pilon:196553..197686+

>Ggra4892.t1 ID=Ggra4892.t1|Name=Ggra4892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000856_pilon:196553..197686+ (Gracilaria gracilis GNS1m male)
ATGAGCGACTTCGAACAACTAATGGAAGCCATATCGGTCCGAAAGCTGGT
CAAAGTTCTGGAGTTGCTTTCGAACGGTCTCGACATCAAACGTAAAGACA
GCCAAGGTCGTACACCTTTGATACTTGCGATCATTCACGAGGACGAGCGA
ATCGTTGAGGTGCTGCTCAACGCAGGAGCTGACTTGGAGGGCAGAGATTA
CAATGGCCGTACTGCTTTGTTGGTTGCCGCGTATAACATGTGTTGCGCAT
TGTCTATCGTTCTGCTGGATGAGGGTGCTCAAGTGGACCCCAAAGACTGG
GCGGGGTATAGTCCGTTGATTTATGCAGCGGATAACGACCACGAAGAACT
TGTTGCCGTGCTTCTAAAGCACAACGCCGATGTGAGCATTCGAAACGTAC
AAGGAAACACGGCGTTGTACTACGCATTGGAAAAGAGGAACCCACAAATC
GTGGAAATGTTGTGGCTTGCAGGTGCAGACCCTCGCGGGACTCGGTTTGA
GTCGATTTTAGATATGGACACAGCTACCAGACCAATGGAGAATCGCGAAT
CCAGTGGGAGGAATTCTTGCAGGAGAGCAGATGATAAAGATATGGAACTC
GTGCGCTTTATGGTTCTAGCAAAAAGGTCGGAAGACGGGTGCTACAGGAT
GACGTACGGAGACGCTGTTAGTGAAGTGACGCATTCGTTGCAAAAACAAA
TTGATAGACAGAATGCACATGATTTTGTTGACCCGGGATTCGTGAACTGC
GCATGCGCTAGTGTGGACTCAGAATATGGAATAAGCATTGAGAAGTTTGA
TTCAGTGTTGAGACAGTTGAAAGCTTTCTATGAATCGCCTGAAAGGTGTG
AAGTGCGCCATGAATTTCGAAAGAGTTTTCGCGAAGCGCTGAGAGTGCAA
GCAATGTTGCAAAGACATTTCGCCAAATATTTGTTACATGCTGCATTTGA
GAGGTCGAGTACAGAGGTTAACGAGGAAGCAGCCGGGGAGCATGGGCTTT
TTGCTCGTAACTACGCTTGGGACGAGGAAGAAGTTGAAGATTTGCTTACG
GAACATGGGTCTGCAGATCAGTtcattgacgaagaaaacttcattagagt
aggcctgaagatagcgtttggggaacgagtgtga