Ggra4888.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4888.t1
Unique NameGgra4888.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000856_piloncontigtig00000856_pilon:51554..52714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4888Ggra4888Gracilaria gracilis GNS1m malegenetig00000856_pilon 51554..52714 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4888.t1.stop1Ggra4888.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000856_pilon 51554..51556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4888.t1.CDS1Ggra4888.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000856_pilon 51554..52714 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4888.t1.exon1Ggra4888.t1.exon1Gracilaria gracilis GNS1m maleexontig00000856_pilon 51554..52714 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4888.t1.start1Ggra4888.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000856_pilon 52712..52714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4888.t1Ggra4888.t1Gracilaria gracilis GNS1m malepolypeptidetig00000856_pilon 51554..52714 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4888.t1 ID=Ggra4888.t1|Name=Ggra4888.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp
MEIHPACSILVNHCIEKQMPLADAAKETQMIFNIEKYNPGPMRHIGSHFK
SPDSFSKYVERVRKHKFRQDGWMKALIGTAYGNNETGVFRSSLNLLITEI
KMVGGSSGIEAFFVRRNGTDRVYSSPWDSDVVRRYHEEVPGHMKIVTVDV
YCDGTILANSGTQSASTLRLRFSNLKGRSRLWHEVGIAPCIDSDGQEASM
TELRKERLQLFQRFLFLAFKDLIHASMSGVVAGGTMIIPRISMIVTDQPQ
ERAFFCLKGADSYADGTLCTTRFKSPISKESNSHDENPNIAHFEVNDVQP
TKRDVTTTVRNQLICARKKLPAAEPTRALTKDAKQILHEARTSLLEQSTH
EYPPALAAFRGLGTAPFLLYETSGLDSFHVLDLGVY*
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spliced messenger RNA

>Ggra4888.t1 ID=Ggra4888.t1|Name=Ggra4888.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000856_pilon:51554..52714- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATCCATCCGGCTTGTTCAATTCTCGTGAACCACTGTATCGAAAA
ACAGATGCCACTTGCGGATGCCGCGAAAGAAACACAGATGATATTCAACA
TCGAGAAATACAATCCAGGGCCCATGCGACACATTGGGAGTCACTTCAAG
TCGCCGGATTCTTTCTCGAAATATGTGGAGCGCGTACGAAAACATAAATT
TCGTCAAGATGGATGGATGAAAGCATTGATTGGTACGGCATATGGCAACA
ACGAAACAGGAGTATTCCGCTCTTCCCTGAACTTATTGATCACAGAAATA
AAAATGGTAGGCGGTTCATCTGGAATAGAAGCGTTTTTTGTGCGACGCAA
TGGCACAGATAGGGTGTATTCATCCCCGTGGGACTCAGATGTTGTGCGCA
GGTATCACGAAGAAGTACCAGGACACATGAAAATTGTAACTGTTGATGTG
TACTGCGATGGGACGATACTGGCCAACTCTGGCACGCAGAGCGCGAGCAC
ACTCCGCCTCCGCTTCAGTAACTTGAAAGGAAGGTCACGTCTGTGGCATG
AAGTAGGAATTGCCCCATGTATAGATTCCGATGGCCAAGAAGCTTCAATG
ACAGAACTGCGAAAAGAGCGACTTCAGTTGTTTCAAAGGTTCCTCTTCCT
TGCATTTAAGGACCTTATTCATGCTTCCATGTCCGGCGTTGTAGCAGGCG
GAACCATGATTATCCCGAGAATCTCTATGATTGTCACAGATCAACCGCAA
GAAAGGGCCTTCTTTTGCTTGAAGGGTGCAGACAGTTACGCAGACGGTAC
ATTATGCACCACGCGTTTTAAGTCACCAATCTCTAAAGAATCAAATAGCC
ATGACGAAAATCCAAACATTGCTCACTTCGAAGTGAACGATGTACAACCT
ACCAAACGAGATGTGACAACAACGGTTCGCAATCAATTGATTTGCGCTAG
AAAAAAGTTACCAGCCGCAGAACCGACACGAGCATTAACCAAAGACGCGA
AACAGATTCTGCATGAGGCCAGGACCTCCCTTCTAGAACAAAGCACGCAT
GAGTATCCTCCAGCGCTTGCCGCATTTCGTGGTCTTGGAACCGCGCCATT
TCTTCTTTACGAGACATCGGGCTTGGATTCTTTCCATGTTCTAGATCTTG
GAGTATACTGA
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protein sequence of Ggra4888.t1

>Ggra4888.t1 ID=Ggra4888.t1|Name=Ggra4888.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=387bp
MEIHPACSILVNHCIEKQMPLADAAKETQMIFNIEKYNPGPMRHIGSHFK
SPDSFSKYVERVRKHKFRQDGWMKALIGTAYGNNETGVFRSSLNLLITEI
KMVGGSSGIEAFFVRRNGTDRVYSSPWDSDVVRRYHEEVPGHMKIVTVDV
YCDGTILANSGTQSASTLRLRFSNLKGRSRLWHEVGIAPCIDSDGQEASM
TELRKERLQLFQRFLFLAFKDLIHASMSGVVAGGTMIIPRISMIVTDQPQ
ERAFFCLKGADSYADGTLCTTRFKSPISKESNSHDENPNIAHFEVNDVQP
TKRDVTTTVRNQLICARKKLPAAEPTRALTKDAKQILHEARTSLLEQSTH
EYPPALAAFRGLGTAPFLLYETSGLDSFHVLDLGVY*
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mRNA from alignment at tig00000856_pilon:51554..52714-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4888.t1 ID=Ggra4888.t1|Name=Ggra4888.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000856_pilon:51554..52714- (Gracilaria gracilis GNS1m male)
ATGGAGATCCATCCGGCTTGTTCAATTCTCGTGAACCACTGTATCGAAAA
ACAGATGCCACTTGCGGATGCCGCGAAAGAAACACAGATGATATTCAACA
TCGAGAAATACAATCCAGGGCCCATGCGACACATTGGGAGTCACTTCAAG
TCGCCGGATTCTTTCTCGAAATATGTGGAGCGCGTACGAAAACATAAATT
TCGTCAAGATGGATGGATGAAAGCATTGATTGGTACGGCATATGGCAACA
ACGAAACAGGAGTATTCCGCTCTTCCCTGAACTTATTGATCACAGAAATA
AAAATGGTAGGCGGTTCATCTGGAATAGAAGCGTTTTTTGTGCGACGCAA
TGGCACAGATAGGGTGTATTCATCCCCGTGGGACTCAGATGTTGTGCGCA
GGTATCACGAAGAAGTACCAGGACACATGAAAATTGTAACTGTTGATGTG
TACTGCGATGGGACGATACTGGCCAACTCTGGCACGCAGAGCGCGAGCAC
ACTCCGCCTCCGCTTCAGTAACTTGAAAGGAAGGTCACGTCTGTGGCATG
AAGTAGGAATTGCCCCATGTATAGATTCCGATGGCCAAGAAGCTTCAATG
ACAGAACTGCGAAAAGAGCGACTTCAGTTGTTTCAAAGGTTCCTCTTCCT
TGCATTTAAGGACCTTATTCATGCTTCCATGTCCGGCGTTGTAGCAGGCG
GAACCATGATTATCCCGAGAATCTCTATGATTGTCACAGATCAACCGCAA
GAAAGGGCCTTCTTTTGCTTGAAGGGTGCAGACAGTTACGCAGACGGTAC
ATTATGCACCACGCGTTTTAAGTCACCAATCTCTAAAGAATCAAATAGCC
ATGACGAAAATCCAAACATTGCTCACTTCGAAGTGAACGATGTACAACCT
ACCAAACGAGATGTGACAACAACGGTTCGCAATCAATTGATTTGCGCTAG
AAAAAAGTTACCAGCCGCAGAACCGACACGAGCATTAACCAAAGACGCGA
AACAGATTCTGCATGAGGCCAGGACCTCCCTTCTAGAACAAAGCACGCAT
GAGTATCCTCCAGCGCTTGCCGCATTTCGTGGTCTTGGAACCGCGCCATT
TCTTCTTTACGAGACATCGGGCTTGGATTCTTTCCATGTTCTAGATCTTG
GAGTATACTGA
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Coding sequence (CDS) from alignment at tig00000856_pilon:51554..52714-

>Ggra4888.t1 ID=Ggra4888.t1|Name=Ggra4888.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00000856_pilon:51554..52714- (Gracilaria gracilis GNS1m male)
ATGGAGATCCATCCGGCTTGTTCAATTCTCGTGAACCACTGTATCGAAAA
ACAGATGCCACTTGCGGATGCCGCGAAAGAAACACAGATGATATTCAACA
TCGAGAAATACAATCCAGGGCCCATGCGACACATTGGGAGTCACTTCAAG
TCGCCGGATTCTTTCTCGAAATATGTGGAGCGCGTACGAAAACATAAATT
TCGTCAAGATGGATGGATGAAAGCATTGATTGGTACGGCATATGGCAACA
ACGAAACAGGAGTATTCCGCTCTTCCCTGAACTTATTGATCACAGAAATA
AAAATGGTAGGCGGTTCATCTGGAATAGAAGCGTTTTTTGTGCGACGCAA
TGGCACAGATAGGGTGTATTCATCCCCGTGGGACTCAGATGTTGTGCGCA
GGTATCACGAAGAAGTACCAGGACACATGAAAATTGTAACTGTTGATGTG
TACTGCGATGGGACGATACTGGCCAACTCTGGCACGCAGAGCGCGAGCAC
ACTCCGCCTCCGCTTCAGTAACTTGAAAGGAAGGTCACGTCTGTGGCATG
AAGTAGGAATTGCCCCATGTATAGATTCCGATGGCCAAGAAGCTTCAATG
ACAGAACTGCGAAAAGAGCGACTTCAGTTGTTTCAAAGGTTCCTCTTCCT
TGCATTTAAGGACCTTATTCATGCTTCCATGTCCGGCGTTGTAGCAGGCG
GAACCATGATTATCCCGAGAATCTCTATGATTGTCACAGATCAACCGCAA
GAAAGGGCCTTCTTTTGCTTGAAGGGTGCAGACAGTTACGCAGACGGTAC
ATTATGCACCACGCGTTTTAAGTCACCAATCTCTAAAGAATCAAATAGCC
ATGACGAAAATCCAAACATTGCTCACTTCGAAGTGAACGATGTACAACCT
ACCAAACGAGATGTGACAACAACGGTTCGCAATCAATTGATTTGCGCTAG
AAAAAAGTTACCAGCCGCAGAACCGACACGAGCATTAACCAAAGACGCGA
AACAGATTCTGCATGAGGCCAGGACCTCCCTTCTAGAACAAAGCACGCAT
GAGTATCCTCCAGCGCTTGCCGCATTTCGTGGTCTTGGAACCGCGCCATT
TCTTCTTTACGAGACATCGGGCTTGGATTCTTTCCATGTTCTAGATCTTG
GAGTATACTGA
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