Ggra4885.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4885.t1
Unique NameGgra4885.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:490133..491406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707687.1
Preferred nameDRG1
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K02156,ko:K06944
KEGG Pathwayko04320,map04320
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006351,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0010646,GO:0010647,GO:0016070,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042802,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833,GO:1990904
Evalue2.06e-179
EggNOG OGsCOG1163@1|root,KOG1487@2759|Eukaryota
DescriptionGTP-binding protein
COG categoryZ
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4885Ggra4885Gracilaria gracilis GNS1m malegenetig00000090_pilon 490133..491406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4885.t1Ggra4885.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 490133..491406 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4885.t1.stop1Ggra4885.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 490133..490135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4885.t1.CDS1Ggra4885.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 490133..490574 -
Ggra4885.t1.CDS2Ggra4885.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 490739..491406 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4885.t1.exon1Ggra4885.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 490133..490574 -
Ggra4885.t1.exon2Ggra4885.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 490739..491406 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4885.t1.intron1Ggra4885.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 490575..490738 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4885.t1.start1Ggra4885.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 491404..491406 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4885.t1 ID=Ggra4885.t1|Name=Ggra4885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MAATLAKIDEIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPPKGGG
GGGDGFEVPKTGDARVGLIGFPSVGKSSLLTLLTGQHSVAAAYEFTTLTC
IPGMLYYNGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILIVLDA
SKPASHKRIIEKELEGFGIRLNKQPPPVIYRRKDRGGISFSSAVQTELNL
ETIKSVCAEYRIHNADFVVRGECTIDEIIDVIEGNRRYVPALYVVNMIDK
ISMEELELYHRMDRYVPISGGLQWNIDGLLETIWDDLKLVRIYTKPKGVT
VVDFAEPVILKNEERQRTVAAFCRRIHKTLEDELKFALVWGKSTKFNPQK
CGKEHVLWDEDVIQLVKQN*
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spliced messenger RNA

>Ggra4885.t1 ID=Ggra4885.t1|Name=Ggra4885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000090_pilon:490133..491406- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTACACTCGCCAAGATCGACGAGATTGAGGCCGAGATGGCGCG
CACGCAGAAGAACAAGGCCACGTCGCAGCATCTGGGCATTCTCAAGGCAA
AGCTGGCAAAGCTGCGTCGCGAGCTCATTGCGCCGCCCAAGGGCGGCGGC
GGCGGCGGCGACGGCTTTGAGGTGCCCAAGACCGGTGATGCACGTGTCGG
TCTCATCGGATTCCCGTCTGTTGGAAAGTCCTCGCTGCTCACGCTTCTCA
CCGGACAGCATAGTGTGGCCGCCGCGTACGAGTTCACAACGCTTACATGC
ATCCCGGGCATGTTGTACTATAACGGCGCAAAGATTCAGCTGCTGGACCT
CCCTGGAATTATTGAGGGCGCAAAGGATGGAAAGGGTCGCGGCCGTCAAG
TCATTGCTGTCGCGCGATCGTGCGATCTTATCCTCATCGTGTTGGACGCG
TCAAAGCCGGCCAGCCACAAGCGAATTATCGAGAAGGAGCTTGAGGGCTT
TGGAATTCGACTCAACAAACAGCCCCCTCCCGTCATTTACAGGCGCAAAG
ATCGTGGCGGCATTTCGTTTTCCTCTGCTGTTCAAACCGAGCTCAACCTA
GAAACTATCAAGAGCGTGTGCGCCGAGTACAGAATTCACAACGCTGATTT
CGTGGTACGTGGAGAATGCACAATTGATGAGATCATTGACGTTATTGAAG
GCAATCGAAGGTATGTACCCGCCTTGTACGTGGTCAACATGATTGACAAA
ATTAGCATGGAGGAACTAGAACTCTATCATCGAATGGATCGCTATGTGCC
CATCAGCGGTGGACTGCAGTGGAACATTGATGGTCTGTTGGAGACCATTT
GGGATGACCTTAAGCTCGTCCGAATCTACACCAAGCCAAAGGGTGTAACT
GTCGTTGACTTTGCAGAACCCGTAATCCTCAAGAACGAGGAACGACAGCG
TACGGTGGCCGCTTTCTGCCGCCGAATCCACAAGACGCTTGAAGACGAGC
TCAAGTTCGCCCTTGTGTGGGGCAAAAGCACAAAGTTCAACCCGCAAAAG
TGCGGAAAGGAACACGTGCTGTGGGACGAAGACGTGATTCAACTCGTGAA
GCAGAATTAG
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protein sequence of Ggra4885.t1

>Ggra4885.t1 ID=Ggra4885.t1|Name=Ggra4885.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MAATLAKIDEIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPPKGGG
GGGDGFEVPKTGDARVGLIGFPSVGKSSLLTLLTGQHSVAAAYEFTTLTC
IPGMLYYNGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILIVLDA
SKPASHKRIIEKELEGFGIRLNKQPPPVIYRRKDRGGISFSSAVQTELNL
ETIKSVCAEYRIHNADFVVRGECTIDEIIDVIEGNRRYVPALYVVNMIDK
ISMEELELYHRMDRYVPISGGLQWNIDGLLETIWDDLKLVRIYTKPKGVT
VVDFAEPVILKNEERQRTVAAFCRRIHKTLEDELKFALVWGKSTKFNPQK
CGKEHVLWDEDVIQLVKQN*
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mRNA from alignment at tig00000090_pilon:490133..491406-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4885.t1 ID=Ggra4885.t1|Name=Ggra4885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1274bp|location=Sequence derived from alignment at tig00000090_pilon:490133..491406- (Gracilaria gracilis GNS1m male)
ATGGCGGCTACACTCGCCAAGATCGACGAGATTGAGGCCGAGATGGCGCG
CACGCAGAAGAACAAGGCCACGTCGCAGCATCTGGGCATTCTCAAGGCAA
AGCTGGCAAAGCTGCGTCGCGAGCTCATTGCGCCGCCCAAGGGCGGCGGC
GGCGGCGGCGACGGCTTTGAGGTGCCCAAGACCGGTGATGCACGTGTCGG
TCTCATCGGATTCCCGTCTGTTGGAAAGTCCTCGCTGCTCACGCTTCTCA
CCGGACAGCATAGTGTGGCCGCCGCGTACGAGTTCACAACGCTTACATGC
ATCCCGGGCATGTTGTACTATAACGGCGCAAAGATTCAGCTGCTGGACCT
CCCTGGAATTATTGAGGGCGCAAAGGATGGAAAGGGTCGCGGCCGTCAAG
TCATTGCTGTCGCGCGATCGTGCGATCTTATCCTCATCGTGTTGGACGCG
TCAAAGCCGGCCAGCCACAAGCGAATTATCGAGAAGGAGCTTGAGGGCTT
TGGAATTCGACTCAACAAACAGCCCCCTCCCGTCATTTACAGGCGCAAAG
ATCGTGGCGGCATTTCGTTTTCCTCTGCTGTTCAAACCGAGCTCAACCTA
GAAACTATCAAGAGCGTGTGCGCCGAGTACAGAATTCACAACGCTGATTT
CGTGGTACGTGGAGAATGGTAAGTTTAATTGTTGTCTCATCACAATCAGC
CAACATGTACTTTTTCGTACCCTATACTTTTGTCGCAGCCATGCTATCGA
TTGGTCTTGTACGCCATGCGAGAAAAGAGCCACTGACATATTCCCTCCCA
CCTTCACATCACTGTCATTCATCTTCAAACAGCACAATTGATGAGATCAT
TGACGTTATTGAAGGCAATCGAAGGTATGTACCCGCCTTGTACGTGGTCA
ACATGATTGACAAAATTAGCATGGAGGAACTAGAACTCTATCATCGAATG
GATCGCTATGTGCCCATCAGCGGTGGACTGCAGTGGAACATTGATGGTCT
GTTGGAGACCATTTGGGATGACCTTAAGCTCGTCCGAATCTACACCAAGC
CAAAGGGTGTAACTGTCGTTGACTTTGCAGAACCCGTAATCCTCAAGAAC
GAGGAACGACAGCGTACGGTGGCCGCTTTCTGCCGCCGAATCCACAAGAC
GCTTGAAGACGAGCTCAAGTTCGCCCTTGTGTGGGGCAAAAGCACAAAGT
TCAACCCGCAAAAGTGCGGAAAGGAACACGTGCTGTGGGACGAAGACGTG
ATTCAACTCGTGAAGCAGAATTAG
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Coding sequence (CDS) from alignment at tig00000090_pilon:490133..491406-

>Ggra4885.t1 ID=Ggra4885.t1|Name=Ggra4885.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000090_pilon:490133..491406- (Gracilaria gracilis GNS1m male)
ATGGCGGCTACACTCGCCAAGATCGACGAGATTGAGGCCGAGATGGCGCG
CACGCAGAAGAACAAGGCCACGTCGCAGCATCTGGGCATTCTCAAGGCAA
AGCTGGCAAAGCTGCGTCGCGAGCTCATTGCGCCGCCCAAGGGCGGCGGC
GGCGGCGGCGACGGCTTTGAGGTGCCCAAGACCGGTGATGCACGTGTCGG
TCTCATCGGATTCCCGTCTGTTGGAAAGTCCTCGCTGCTCACGCTTCTCA
CCGGACAGCATAGTGTGGCCGCCGCGTACGAGTTCACAACGCTTACATGC
ATCCCGGGCATGTTGTACTATAACGGCGCAAAGATTCAGCTGCTGGACCT
CCCTGGAATTATTGAGGGCGCAAAGGATGGAAAGGGTCGCGGCCGTCAAG
TCATTGCTGTCGCGCGATCGTGCGATCTTATCCTCATCGTGTTGGACGCG
TCAAAGCCGGCCAGCCACAAGCGAATTATCGAGAAGGAGCTTGAGGGCTT
TGGAATTCGACTCAACAAACAGCCCCCTCCCGTCATTTACAGGCGCAAAG
ATCGTGGCGGCATTTCGTTTTCCTCTGCTGTTCAAACCGAGCTCAACCTA
GAAACTATCAAGAGCGTGTGCGCCGAGTACAGAATTCACAACGCTGATTT
CGTGGTACGTGGAGAATGCACAATTGATGAGATCATTGACGTTATTGAAG
GCAATCGAAGGTATGTACCCGCCTTGTACGTGGTCAACATGATTGACAAA
ATTAGCATGGAGGAACTAGAACTCTATCATCGAATGGATCGCTATGTGCC
CATCAGCGGTGGACTGCAGTGGAACATTGATGGTCTGTTGGAGACCATTT
GGGATGACCTTAAGCTCGTCCGAATCTACACCAAGCCAAAGGGTGTAACT
GTCGTTGACTTTGCAGAACCCGTAATCCTCAAGAACGAGGAACGACAGCG
TACGGTGGCCGCTTTCTGCCGCCGAATCCACAAGACGCTTGAAGACGAGC
TCAAGTTCGCCCTTGTGTGGGGCAAAAGCACAAAGTTCAACCCGCAAAAG
TGCGGAAAGGAACACGTGCTGTGGGACGAAGACGTGATTCAACTCGTGAA
GCAGAATTAG
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