Ggra4884.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4884.t1
Unique NameGgra4884.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:488687..489343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1541065.JRFE01000057_gene6298
PFAMsMethyltransf_11
Max annot lvl1117|Cyanobacteria
Evalue5.9e-42
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1G0GS@1117|Cyanobacteria,3VIJE@52604|Pleurocapsales
DescriptionHypothetical methyltransferase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4884Ggra4884Gracilaria gracilis GNS1m malegenetig00000090_pilon 488687..489343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4884.t1.stop1Ggra4884.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 488687..488689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4884.t1.CDS1Ggra4884.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 488687..489343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4884.t1.exon1Ggra4884.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 488687..489343 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4884.t1.start1Ggra4884.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 489341..489343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4884.t1Ggra4884.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 488687..489343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4884.t1 ID=Ggra4884.t1|Name=Ggra4884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MLDRLMKEAFSRAMEYGMKSYEALIAERKQALFGAIADGSTVVDIGMGTG
PNIRYMPKDVKLIGIEPNKFMWRYAQEKARLHGVQLTLKEGVCEQLPLDD
ESCDVVITTLTLCSVRSPKAALQEIMRVLRRGGRHIFVEHVIGSAKRPVL
RAAQTVLNPVQVALGDGCHLNRDTLQYLKDVNNGAYDRIEYEEFDALFGG
IEDWMSPIKSHVAGFVVK*
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spliced messenger RNA

>Ggra4884.t1 ID=Ggra4884.t1|Name=Ggra4884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000090_pilon:488687..489343- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGACCGGCTGATGAAGGAGGCGTTTTCGCGCGCGATGGAGTACGG
AATGAAGTCGTACGAAGCGCTGATAGCAGAGAGGAAACAAGCGCTGTTTG
GCGCAATCGCTGACGGCAGCACGGTGGTGGACATAGGAATGGGAACAGGC
CCGAACATACGCTACATGCCGAAGGACGTAAAGCTGATTGGCATCGAACC
GAACAAGTTTATGTGGCGCTACGCACAAGAGAAGGCGCGGTTGCACGGAG
TGCAGCTGACGCTCAAGGAGGGCGTGTGTGAGCAGCTGCCGCTCGACGAC
GAGAGCTGCGATGTGGTGATCACGACGCTGACATTGTGCTCGGTGCGCTC
GCCAAAAGCGGCGCTGCAGGAAATCATGCGCGTGCTGCGGCGTGGCGGCA
GACACATTTTCGTGGAGCATGTGATAGGGTCGGCGAAGCGACCGGTGCTT
CGTGCGGCGCAGACGGTTCTGAATCCCGTTCAGGTTGCTCTCGGGGACGG
GTGTCACCTGAACAGAGACACGTTGCAGTACTTGAAGGATGTGAACAACG
GGGCATATGATCGGATCGAATACGAAGAATTTGACGCGTTGTTTGGGGGG
ATTGAGGACTGGATGAGTCCGATCAAGAGTCATGTTGCTGGTTTTGTTGT
GAAGTAG
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protein sequence of Ggra4884.t1

>Ggra4884.t1 ID=Ggra4884.t1|Name=Ggra4884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MLDRLMKEAFSRAMEYGMKSYEALIAERKQALFGAIADGSTVVDIGMGTG
PNIRYMPKDVKLIGIEPNKFMWRYAQEKARLHGVQLTLKEGVCEQLPLDD
ESCDVVITTLTLCSVRSPKAALQEIMRVLRRGGRHIFVEHVIGSAKRPVL
RAAQTVLNPVQVALGDGCHLNRDTLQYLKDVNNGAYDRIEYEEFDALFGG
IEDWMSPIKSHVAGFVVK*
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mRNA from alignment at tig00000090_pilon:488687..489343-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4884.t1 ID=Ggra4884.t1|Name=Ggra4884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000090_pilon:488687..489343- (Gracilaria gracilis GNS1m male)
ATGCTCGACCGGCTGATGAAGGAGGCGTTTTCGCGCGCGATGGAGTACGG
AATGAAGTCGTACGAAGCGCTGATAGCAGAGAGGAAACAAGCGCTGTTTG
GCGCAATCGCTGACGGCAGCACGGTGGTGGACATAGGAATGGGAACAGGC
CCGAACATACGCTACATGCCGAAGGACGTAAAGCTGATTGGCATCGAACC
GAACAAGTTTATGTGGCGCTACGCACAAGAGAAGGCGCGGTTGCACGGAG
TGCAGCTGACGCTCAAGGAGGGCGTGTGTGAGCAGCTGCCGCTCGACGAC
GAGAGCTGCGATGTGGTGATCACGACGCTGACATTGTGCTCGGTGCGCTC
GCCAAAAGCGGCGCTGCAGGAAATCATGCGCGTGCTGCGGCGTGGCGGCA
GACACATTTTCGTGGAGCATGTGATAGGGTCGGCGAAGCGACCGGTGCTT
CGTGCGGCGCAGACGGTTCTGAATCCCGTTCAGGTTGCTCTCGGGGACGG
GTGTCACCTGAACAGAGACACGTTGCAGTACTTGAAGGATGTGAACAACG
GGGCATATGATCGGATCGAATACGAAGAATTTGACGCGTTGTTTGGGGGG
ATTGAGGACTGGATGAGTCCGATCAAGAGTCATGTTGCTGGTTTTGTTGT
GAAGTAG
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Coding sequence (CDS) from alignment at tig00000090_pilon:488687..489343-

>Ggra4884.t1 ID=Ggra4884.t1|Name=Ggra4884.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000090_pilon:488687..489343- (Gracilaria gracilis GNS1m male)
ATGCTCGACCGGCTGATGAAGGAGGCGTTTTCGCGCGCGATGGAGTACGG
AATGAAGTCGTACGAAGCGCTGATAGCAGAGAGGAAACAAGCGCTGTTTG
GCGCAATCGCTGACGGCAGCACGGTGGTGGACATAGGAATGGGAACAGGC
CCGAACATACGCTACATGCCGAAGGACGTAAAGCTGATTGGCATCGAACC
GAACAAGTTTATGTGGCGCTACGCACAAGAGAAGGCGCGGTTGCACGGAG
TGCAGCTGACGCTCAAGGAGGGCGTGTGTGAGCAGCTGCCGCTCGACGAC
GAGAGCTGCGATGTGGTGATCACGACGCTGACATTGTGCTCGGTGCGCTC
GCCAAAAGCGGCGCTGCAGGAAATCATGCGCGTGCTGCGGCGTGGCGGCA
GACACATTTTCGTGGAGCATGTGATAGGGTCGGCGAAGCGACCGGTGCTT
CGTGCGGCGCAGACGGTTCTGAATCCCGTTCAGGTTGCTCTCGGGGACGG
GTGTCACCTGAACAGAGACACGTTGCAGTACTTGAAGGATGTGAACAACG
GGGCATATGATCGGATCGAATACGAAGAATTTGACGCGTTGTTTGGGGGG
ATTGAGGACTGGATGAGTCCGATCAAGAGTCATGTTGCTGGTTTTGTTGT
GAAGTAG
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