Ggra4878.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4878.t1
Unique NameGgra4878.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:478517..479191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010536324.1
PFAMsDEK_C,SWIB
Max annot lvl35493|Streptophyta
KEGG koko:K15223
GOsGO:0000120,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue3.65e-13
EggNOG OGsCOG5531@1|root,KOG1946@2759|Eukaryota,37Q9W@33090|Viridiplantae,3GDB0@35493|Streptophyta,3HMIK@3699|Brassicales
DescriptionSWIB complex BAF60b domain-containing protein
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4878Ggra4878Gracilaria gracilis GNS1m malegenetig00000090_pilon 478517..479191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4878.t1.stop1Ggra4878.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 478517..478519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4878.t1.CDS1Ggra4878.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 478517..479191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4878.t1.exon1Ggra4878.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 478517..479191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4878.t1.start1Ggra4878.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 479189..479191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4878.t1Ggra4878.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 478517..479191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4878.t1 ID=Ggra4878.t1|Name=Ggra4878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp
MNTPVLVSKELRECIGGDEMSNRSQILASLSKYVRENNMYVDSDKKRILC
DEQLSSLLNIVGELDFWDAFRLLKPHLTDPSDLGPEYESRAKDFFEKYLK
EKGALASWHKPDQDMDPRGRNSAAAQKRLKEHRRGMYAEVCVEARLLPLC
DGKSRLSRPQVLKSVWAYIKKHQLQDATNGRRIRVTQTLRDALRLPDVEW
IDSFRLGSYIFKSPTSEEEETPNT*
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spliced messenger RNA

>Ggra4878.t1 ID=Ggra4878.t1|Name=Ggra4878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000090_pilon:478517..479191- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACGCCAGTACTAGTATCAAAGGAGCTGAGGGAATGCATTGGTGG
CGATGAAATGAGCAATCGTTCCCAGATCCTGGCGAGCCTCAGCAAGTACG
TGCGGGAAAACAACATGTACGTGGACAGTGACAAGAAGCGTATTCTATGC
GATGAGCAACTTTCTTCACTCTTAAACATTGTAGGTGAATTAGATTTCTG
GGATGCGTTCCGACTCCTAAAACCACACCTTACAGACCCGTCAGACTTGG
GTCCCGAGTATGAGTCACGAGCAAAAGATTTTTTTGAGAAGTACCTTAAA
GAAAAAGGTGCGCTTGCTTCTTGGCATAAACCAGATCAAGATATGGACCC
ACGTGGTAGGAACTCAGCTGCTGCGCAGAAACGGCTTAAAGAGCACCGTC
GGGGTATGTACGCTGAGGTTTGTGTCGAAGCGCGCCTTCTCCCCCTTTGC
GATGGAAAATCTCGATTGTCGAGACCGCAGGTTTTGAAGTCTGTGTGGGC
GTACATCAAGAAACACCAACTGCAAGACGCTACGAACGGAAGGCGAATCC
GGGTCACTCAAACGCTGCGCGATGCGCTCAGACTACCGGATGTGGAATGG
ATTGATTCGTTTAGATTGGGCAGCTATATCTTCAAATCACCAACTTCAGA
GGAAGAAGAAACGCCAAACACTTAA
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protein sequence of Ggra4878.t1

>Ggra4878.t1 ID=Ggra4878.t1|Name=Ggra4878.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=225bp
MNTPVLVSKELRECIGGDEMSNRSQILASLSKYVRENNMYVDSDKKRILC
DEQLSSLLNIVGELDFWDAFRLLKPHLTDPSDLGPEYESRAKDFFEKYLK
EKGALASWHKPDQDMDPRGRNSAAAQKRLKEHRRGMYAEVCVEARLLPLC
DGKSRLSRPQVLKSVWAYIKKHQLQDATNGRRIRVTQTLRDALRLPDVEW
IDSFRLGSYIFKSPTSEEEETPNT*
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mRNA from alignment at tig00000090_pilon:478517..479191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4878.t1 ID=Ggra4878.t1|Name=Ggra4878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000090_pilon:478517..479191- (Gracilaria gracilis GNS1m male)
ATGAACACGCCAGTACTAGTATCAAAGGAGCTGAGGGAATGCATTGGTGG
CGATGAAATGAGCAATCGTTCCCAGATCCTGGCGAGCCTCAGCAAGTACG
TGCGGGAAAACAACATGTACGTGGACAGTGACAAGAAGCGTATTCTATGC
GATGAGCAACTTTCTTCACTCTTAAACATTGTAGGTGAATTAGATTTCTG
GGATGCGTTCCGACTCCTAAAACCACACCTTACAGACCCGTCAGACTTGG
GTCCCGAGTATGAGTCACGAGCAAAAGATTTTTTTGAGAAGTACCTTAAA
GAAAAAGGTGCGCTTGCTTCTTGGCATAAACCAGATCAAGATATGGACCC
ACGTGGTAGGAACTCAGCTGCTGCGCAGAAACGGCTTAAAGAGCACCGTC
GGGGTATGTACGCTGAGGTTTGTGTCGAAGCGCGCCTTCTCCCCCTTTGC
GATGGAAAATCTCGATTGTCGAGACCGCAGGTTTTGAAGTCTGTGTGGGC
GTACATCAAGAAACACCAACTGCAAGACGCTACGAACGGAAGGCGAATCC
GGGTCACTCAAACGCTGCGCGATGCGCTCAGACTACCGGATGTGGAATGG
ATTGATTCGTTTAGATTGGGCAGCTATATCTTCAAATCACCAACTTCAGA
GGAAGAAGAAACGCCAAACACTTAA
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Coding sequence (CDS) from alignment at tig00000090_pilon:478517..479191-

>Ggra4878.t1 ID=Ggra4878.t1|Name=Ggra4878.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00000090_pilon:478517..479191- (Gracilaria gracilis GNS1m male)
ATGAACACGCCAGTACTAGTATCAAAGGAGCTGAGGGAATGCATTGGTGG
CGATGAAATGAGCAATCGTTCCCAGATCCTGGCGAGCCTCAGCAAGTACG
TGCGGGAAAACAACATGTACGTGGACAGTGACAAGAAGCGTATTCTATGC
GATGAGCAACTTTCTTCACTCTTAAACATTGTAGGTGAATTAGATTTCTG
GGATGCGTTCCGACTCCTAAAACCACACCTTACAGACCCGTCAGACTTGG
GTCCCGAGTATGAGTCACGAGCAAAAGATTTTTTTGAGAAGTACCTTAAA
GAAAAAGGTGCGCTTGCTTCTTGGCATAAACCAGATCAAGATATGGACCC
ACGTGGTAGGAACTCAGCTGCTGCGCAGAAACGGCTTAAAGAGCACCGTC
GGGGTATGTACGCTGAGGTTTGTGTCGAAGCGCGCCTTCTCCCCCTTTGC
GATGGAAAATCTCGATTGTCGAGACCGCAGGTTTTGAAGTCTGTGTGGGC
GTACATCAAGAAACACCAACTGCAAGACGCTACGAACGGAAGGCGAATCC
GGGTCACTCAAACGCTGCGCGATGCGCTCAGACTACCGGATGTGGAATGG
ATTGATTCGTTTAGATTGGGCAGCTATATCTTCAAATCACCAACTTCAGA
GGAAGAAGAAACGCCAAACACTTAA
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