Ggra4877.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4877.t1
Unique NameGgra4877.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:461555..464501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4877Ggra4877Gracilaria gracilis GNS1m malegenetig00000090_pilon 461555..464501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4877.t1Ggra4877.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 461555..464501 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4877.t1.start1Ggra4877.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 461555..461557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4877.t1.CDS1Ggra4877.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 461555..461717 +
Ggra4877.t1.CDS2Ggra4877.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 462700..463146 +
Ggra4877.t1.CDS3Ggra4877.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000090_pilon 463421..464110 +
Ggra4877.t1.CDS4Ggra4877.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000090_pilon 464185..464501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4877.t1.exon1Ggra4877.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 461555..461717 +
Ggra4877.t1.exon2Ggra4877.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 462700..463146 +
Ggra4877.t1.exon3Ggra4877.t1.exon3Gracilaria gracilis GNS1m maleexontig00000090_pilon 463421..464110 +
Ggra4877.t1.exon4Ggra4877.t1.exon4Gracilaria gracilis GNS1m maleexontig00000090_pilon 464185..464501 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4877.t1.intron1Ggra4877.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 461718..462699 +
Ggra4877.t1.intron2Ggra4877.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000090_pilon 463147..463420 +
Ggra4877.t1.intron3Ggra4877.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000090_pilon 464111..464184 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4877.t1.stop1Ggra4877.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 464499..464501 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4877.t1 ID=Ggra4877.t1|Name=Ggra4877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=539bp
MCKHTFNILYEILADELDRNHSMGNRSKRTTIHDCVRLGVGLRMLAGASY
LDLMAVSGDALVSVLCHSDVPEFETATFTTTEPTREILLDTDFSQTTFGE
TPVVVSTSPIGFSSSEAAFDAPMHPSGSGSSGFRRSAAVEDVDWKQIDDA
GSTESSEVIVFLEENGIPSPSPSATSSPAQNVETGTDDDDVQKFVSGADS
NIRLILVSEIEDPSIPSTPEKSAVTIIDTELDADDEPIPSSMPLSESLGN
AQTSISPASASTGLQSDENGSSNDAEDAVIVALDADSAAVSTDPQPISSK
TPVPVSVPIPPNATTEGTRNDENGDVQILVPDARETPASGSSTSDDDPVD
ATEISSLQPSPSTAVAIAPAATVTDNQIEIVVTDTPTATPIPGTASASSR
NEIQDVVILDDETSDTSSVEAHDGVCLGGVTSDGSDIVIIGSTGAQARPI
PVSSVVSVAAPEAVAEVPDTDAEVIQVSETENSDPVDSSALTGDESVPSI
IEGEYKNLIGTVPAGKGFSIGMGVLGALLVLLLLVLPQ*
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spliced messenger RNA

>Ggra4877.t1 ID=Ggra4877.t1|Name=Ggra4877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000090_pilon:461555..464501+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAGCACACGTTTAACATCCTCTACGAAATTCTTGCAGATGAGCT
TGATCGCAATCATAGCATGGGAAATCGCAGCAAGAGAACAACTATACATG
ACTGTGTAAGGCTGGGAGTTGGGCTTCGGATGTTAGCTGGGGCATCTTAT
TTGGACTTAATGGCCGTCTCCGGAGATGCCTTAGTGTCTGTGTTGTGTCA
CAGCGATGTTCCTGAATTCGAAACGGCGACATTCACTACAACCGAGCCCA
CCCGTGAAATCTTGCTAGACACGGATTTCAGTCAAACAACATTTGGAGAA
ACACCTGTTGTGGTGTCCACAAGTCCCATCGGTTTTTCATCTAGTGAGGC
GGCTTTTGATGCTCCAATGCATCCATCCGGGTCTGGTTCAAGCGGTTTTC
GCCGGAGTGCAGCAGTGGAGGACGTTGATTGGAAACAGATCGATGACGCT
GGTTCAACTGAATCCTCTGAGGTAATCGTCTTTCTCGAGGAGAATGGTAT
ACCGTCGCCATCACCGTCCGCGACGTCTAGTCCCGCGCAGAATGTTGAGA
CTGGGACTGATGATGACGATGTTCAAAAGTTTGTCTCCGGTGCCGATTCC
AACATCAGGTTGATACTTGTTTCCGAAATTGAGGATCCTTCAATTCCCTC
CACACCAGAAAAGTCGGCGGTGACCATTATCGACACGGAATTAGATGCAG
ATGACGAACCAATTCCGAGTTCAATGCCGTTGTCGGAAAGCCTTGGCAAC
GCTCAAACTTCTATTTCTCCTGCGAGTGCCTCAACTGGTCTGCAGAGTGA
CGAAAACGGTTCATCGAATGATGCGGAGGATGCCGTTATTGTGGCTCTTG
ACGCTGATTCTGCCGCAGTTTCCACGGACCCGCAACCTATTTCTTCTAAG
ACGCCAGTCCCTGTCAGCGTTCCTATACCGCCTAACGCCACAACAGAGGG
AACTAGGAATGACGAAAATGGCGATGTCCAAATATTGGTACCAGATGCAC
GAGAAACACCAGCTTCTGGCTCTTCAACTTCTGACGATGATCCTGTGGAT
GCTACGGAGATTTCGTCATTGCAACCATCGCCAAGTACTGCGGTCGCTAT
TGCACCTGCAGCCACAGTTACGGACAACCAGATTGAAATAGTGGTAACAG
ATACACCCACTGCAACTCCTATCCCTGGAACTGCATCCGCCTCGTCGCGA
AACGAAATTCAAGATGTTGTCATATTAGACGACGAAACGTCTGATACTTC
AAGCGTAGAAGCCCACGACGGGGTCTGTTTGGGAGGTGTAACTTCAGATG
GATCGGATATCGTCATTATTGGTTCGACTGGTGCTCAGGCACGTCCCATT
CCTGTATCGTCCGTAGTGTCTGTGGCTGCTCCTGAAGCTGTGGCAGAAGT
TCCAGACACTGATGCCGAAGTCATCCAAGTCTCAGAAACGGAAAATTCCG
ATCCAGTCGATTCATCTGCTCTGACGGGTGACGAAAGTGTGCCATCGATT
ATCGAAGGAGAGTACAAAAACCTTATCGGAACAGTACCAGCGGGAAAGGG
ATTTTCAATCGGAATGGGTGTTCTTGGGGCATTGTTAGTGCTTCTGTTGC
TTGTGCTGCcccagtag
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protein sequence of Ggra4877.t1

>Ggra4877.t1 ID=Ggra4877.t1|Name=Ggra4877.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=539bp
MCKHTFNILYEILADELDRNHSMGNRSKRTTIHDCVRLGVGLRMLAGASY
LDLMAVSGDALVSVLCHSDVPEFETATFTTTEPTREILLDTDFSQTTFGE
TPVVVSTSPIGFSSSEAAFDAPMHPSGSGSSGFRRSAAVEDVDWKQIDDA
GSTESSEVIVFLEENGIPSPSPSATSSPAQNVETGTDDDDVQKFVSGADS
NIRLILVSEIEDPSIPSTPEKSAVTIIDTELDADDEPIPSSMPLSESLGN
AQTSISPASASTGLQSDENGSSNDAEDAVIVALDADSAAVSTDPQPISSK
TPVPVSVPIPPNATTEGTRNDENGDVQILVPDARETPASGSSTSDDDPVD
ATEISSLQPSPSTAVAIAPAATVTDNQIEIVVTDTPTATPIPGTASASSR
NEIQDVVILDDETSDTSSVEAHDGVCLGGVTSDGSDIVIIGSTGAQARPI
PVSSVVSVAAPEAVAEVPDTDAEVIQVSETENSDPVDSSALTGDESVPSI
IEGEYKNLIGTVPAGKGFSIGMGVLGALLVLLLLVLPQ*
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mRNA from alignment at tig00000090_pilon:461555..464501+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4877.t1 ID=Ggra4877.t1|Name=Ggra4877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2947bp|location=Sequence derived from alignment at tig00000090_pilon:461555..464501+ (Gracilaria gracilis GNS1m male)
ATGTGCAAGCACACGTTTAACATCCTCTACGAAATTCTTGCAGATGAGCT
TGATCGCAATCATAGCATGGGAAATCGCAGCAAGAGAACAACTATACATG
ACTGTGTAAGGCTGGGAGTTGGGCTTCGGATGTTAGCTGGGGCATCTTAT
TTGGACTTAATGGGTATGTATCGCATAAGTGCAACCAGTGTGTACCGAAT
TTTTAAGGAGGTTCGAGAAGCAGTTTTATCCAAACTCTCCTTCCCAGGAC
TTCCTGGAAATGACCAAGGTTTACGAAACCTTGCCGATGGATTTACCTGG
TCTCGAAGAACACCGAATGTTCTGTATgggtgtatcggagccttggatgt
aatatgcgtccgaactcggaaaccccgtgagcatgagaatcttgcagcgt
acttttgccgaaagaattactacgcaattccggtgcaagctctggtagac
tctgactatagagtgttggacttttctgcgttggtttgtggttctactaa
cgattctttggcattttctatgtctccattagcgcgattcatagagaagg
gtggcataccatacggctactatattgctgagggcaacgcgtatCCACAG
AGCGATTTAGTAGTGACTCCGTTTAGTGGTACATTAGATTGTTTTTTCAG
AGACGCTTTAAATGGGCTTCATTCGTCGATGAAGATGCACGTGGAGCACC
CCTTTGGGATTATGGTGCGTCGTTGGCGAATACTATACGTGTCTGAGCCG
AACTACTCTTTACGTGAGTGCACTAGGGTGATCGTGGTCGCCGTTCTGCT
TCACAATTTTTGCATAGATAACGGGGAGAATTTGTACTACGATCATAGTC
AGGGAGAGATTGCAATCTTTGGGAATGAGGCCGACACTTGGTACAAGAGC
ATGAAAGAAGATTACAATTCCATGGTATCTAGTAGCAATAGTTCTGGCAC
TGACTGTAACAACCAAGATCTCCGAGAGAAGCTTCTCACCATAGTTCGCG
AAAAGGGCATTACCAGCCCTCCTCCACGCAACTACTATTTACTCCCCACT
GCCTGCCATTTTTTTTCCTCCCTTTTCCACTCACAGATCCAACTGAACTG
GAGGGAATCATCCTAGTTAATGGCATAACCGACCTTCGTTCACAGCCGTC
TCCGGAGATGCCTTAGTGTCTGTGTTGTGTCACAGCGATGTTCCTGAATT
CGAAACGGCGACATTCACTACAACCGAGCCCACCCGTGAAATCTTGCTAG
ACACGGATTTCAGTCAAACAACATTTGGAGAAACACCTGTTGTGGTGTCC
ACAAGTCCCATCGGTTTTTCATCTAGTGAGGCGGCTTTTGATGCTCCAAT
GCATCCATCCGGGTCTGGTTCAAGCGGTTTTCGCCGGAGTGCAGCAGTGG
AGGACGTTGATTGGAAACAGATCGATGACGCTGGTTCAACTGAATCCTCT
GAGGTAATCGTCTTTCTCGAGGAGAATGGTATACCGTCGCCATCACCGTC
CGCGACGTCTAGTCCCGCGCAGAATGTTGAGACTGGGACTGATGATGACG
ATGTTCAAAAGTTTGTCTCCGGTGCCGATTCCAACATCAGGTGTAATCAT
CGTAGCTCATGGGAAAGATCCAACCACACAATCTCCATCCCCTAGCAAAG
CAACAGCTCCCAATACAAGCCCTGATTCTGGTGTGCTCATTTCAGTTGAG
GGTGGAGGAGAATAACAAAAGTTCTCCACAATCAACGAATCATTTTCGCC
GTCACCACCGCCCGGTACCGAGATAACCCTGGCTGCCGGGCAAGAAGGAT
CGTCTCAGGAGTCTCAATCTCCAGCGACGGCATCTGCAGCAGAGCCATCG
ACATAGGGTTCTGCAGTGATACTTGTTTCCGAAATTGAGGATCCTTCAAT
TCCCTCCACACCAGAAAAGTCGGCGGTGACCATTATCGACACGGAATTAG
ATGCAGATGACGAACCAATTCCGAGTTCAATGCCGTTGTCGGAAAGCCTT
GGCAACGCTCAAACTTCTATTTCTCCTGCGAGTGCCTCAACTGGTCTGCA
GAGTGACGAAAACGGTTCATCGAATGATGCGGAGGATGCCGTTATTGTGG
CTCTTGACGCTGATTCTGCCGCAGTTTCCACGGACCCGCAACCTATTTCT
TCTAAGACGCCAGTCCCTGTCAGCGTTCCTATACCGCCTAACGCCACAAC
AGAGGGAACTAGGAATGACGAAAATGGCGATGTCCAAATATTGGTACCAG
ATGCACGAGAAACACCAGCTTCTGGCTCTTCAACTTCTGACGATGATCCT
GTGGATGCTACGGAGATTTCGTCATTGCAACCATCGCCAAGTACTGCGGT
CGCTATTGCACCTGCAGCCACAGTTACGGACAACCAGATTGAAATAGTGG
TAACAGATACACCCACTGCAACTCCTATCCCTGGAACTGCATCCGCCTCG
TCGCGAAACGAAATTCAAGATGTTGTCATATTAGACGACGAAACGTCTGA
TACTTCAAGCGTAGAAGCCCACGACGGGGTCTGTTTGGGAGGTGTAACTT
CAGATGGTTCTTCCTCAGACGTAGATGGCGTTGCATCCGCGTCTCCTTCT
CTGACCCCTCACTAATTGTTTCGTTAACAGGATCGGATATCGTCATTATT
GGTTCGACTGGTGCTCAGGCACGTCCCATTCCTGTATCGTCCGTAGTGTC
TGTGGCTGCTCCTGAAGCTGTGGCAGAAGTTCCAGACACTGATGCCGAAG
TCATCCAAGTCTCAGAAACGGAAAATTCCGATCCAGTCGATTCATCTGCT
CTGACGGGTGACGAAAGTGTGCCATCGATTATCGAAGGAGAGTACAAAAA
CCTTATCGGAACAGTACCAGCGGGAAAGGGATTTTCAATCGGAATGGGTG
TTCTTGGGGCATTGTTAGTGCTTCTGTTGCTTGTGCTGCcccagtag
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Coding sequence (CDS) from alignment at tig00000090_pilon:461555..464501+

>Ggra4877.t1 ID=Ggra4877.t1|Name=Ggra4877.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00000090_pilon:461555..464501+ (Gracilaria gracilis GNS1m male)
ATGTGCAAGCACACGTTTAACATCCTCTACGAAATTCTTGCAGATGAGCT
TGATCGCAATCATAGCATGGGAAATCGCAGCAAGAGAACAACTATACATG
ACTGTGTAAGGCTGGGAGTTGGGCTTCGGATGTTAGCTGGGGCATCTTAT
TTGGACTTAATGGCCGTCTCCGGAGATGCCTTAGTGTCTGTGTTGTGTCA
CAGCGATGTTCCTGAATTCGAAACGGCGACATTCACTACAACCGAGCCCA
CCCGTGAAATCTTGCTAGACACGGATTTCAGTCAAACAACATTTGGAGAA
ACACCTGTTGTGGTGTCCACAAGTCCCATCGGTTTTTCATCTAGTGAGGC
GGCTTTTGATGCTCCAATGCATCCATCCGGGTCTGGTTCAAGCGGTTTTC
GCCGGAGTGCAGCAGTGGAGGACGTTGATTGGAAACAGATCGATGACGCT
GGTTCAACTGAATCCTCTGAGGTAATCGTCTTTCTCGAGGAGAATGGTAT
ACCGTCGCCATCACCGTCCGCGACGTCTAGTCCCGCGCAGAATGTTGAGA
CTGGGACTGATGATGACGATGTTCAAAAGTTTGTCTCCGGTGCCGATTCC
AACATCAGGTTGATACTTGTTTCCGAAATTGAGGATCCTTCAATTCCCTC
CACACCAGAAAAGTCGGCGGTGACCATTATCGACACGGAATTAGATGCAG
ATGACGAACCAATTCCGAGTTCAATGCCGTTGTCGGAAAGCCTTGGCAAC
GCTCAAACTTCTATTTCTCCTGCGAGTGCCTCAACTGGTCTGCAGAGTGA
CGAAAACGGTTCATCGAATGATGCGGAGGATGCCGTTATTGTGGCTCTTG
ACGCTGATTCTGCCGCAGTTTCCACGGACCCGCAACCTATTTCTTCTAAG
ACGCCAGTCCCTGTCAGCGTTCCTATACCGCCTAACGCCACAACAGAGGG
AACTAGGAATGACGAAAATGGCGATGTCCAAATATTGGTACCAGATGCAC
GAGAAACACCAGCTTCTGGCTCTTCAACTTCTGACGATGATCCTGTGGAT
GCTACGGAGATTTCGTCATTGCAACCATCGCCAAGTACTGCGGTCGCTAT
TGCACCTGCAGCCACAGTTACGGACAACCAGATTGAAATAGTGGTAACAG
ATACACCCACTGCAACTCCTATCCCTGGAACTGCATCCGCCTCGTCGCGA
AACGAAATTCAAGATGTTGTCATATTAGACGACGAAACGTCTGATACTTC
AAGCGTAGAAGCCCACGACGGGGTCTGTTTGGGAGGTGTAACTTCAGATG
GATCGGATATCGTCATTATTGGTTCGACTGGTGCTCAGGCACGTCCCATT
CCTGTATCGTCCGTAGTGTCTGTGGCTGCTCCTGAAGCTGTGGCAGAAGT
TCCAGACACTGATGCCGAAGTCATCCAAGTCTCAGAAACGGAAAATTCCG
ATCCAGTCGATTCATCTGCTCTGACGGGTGACGAAAGTGTGCCATCGATT
ATCGAAGGAGAGTACAAAAACCTTATCGGAACAGTACCAGCGGGAAAGGG
ATTTTCAATCGGAATGGGTGTTCTTGGGGCATTGTTAGTGCTTCTGTTGC
TTGTGCTGCcccagtag
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