Ggra4876.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4876.t1
Unique NameGgra4876.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:427989..429221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD118CT
PFAMsACP_syn_III_C,Chal_sti_synt_C,FAE1_CUT1_RppA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Evalue1.09e-91
EggNOG OGsCOG3424@1|root,2QPKZ@2759|Eukaryota
EC2.3.1.199
Descriptionvery-long-chain 3-ketoacyl-CoA synthase activity
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4876Ggra4876Gracilaria gracilis GNS1m malegenetig00000090_pilon 427989..429221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4876.t1Ggra4876.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 427989..429221 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4876.t1.stop1Ggra4876.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 427989..427991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4876.t1.CDS1Ggra4876.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 427989..428261 -
Ggra4876.t1.CDS2Ggra4876.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 428541..429221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4876.t1.exon1Ggra4876.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 427989..428261 -
Ggra4876.t1.exon2Ggra4876.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 428541..429221 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4876.t1.intron1Ggra4876.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 428262..428540 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4876.t1.start1Ggra4876.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 429219..429221 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4876.t1 ID=Ggra4876.t1|Name=Ggra4876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MLVNKYKMRSSVRTYNLAGIGCSAGIISVDLGKDLLQVHRNAICVVVSTG
NITQNWDLGRVSSMLITNTLFRIGGAAVLLTNEANKKRRARYVLKHTVQT
HVSADDLAYDSIFQMENKTGLRGVKLSKKIMDVAGGALKKNVTTLGPSVF
PLTEHIKSGVHLPRKKILGQELAPYILDFYMAFQHFCIHTGGRAVIDVMQ
KTLKMTRQDVKASWYALTRYGNMSSASRTTMKKATNNYRSLLSPLRMGLL
TLRNCIVMEPMARGRAGPNMTANMLIAEYYVQSFSAGLIIAKGTHTPKMG
GGFFHTPEIFSEEHLGG*
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spliced messenger RNA

>Ggra4876.t1 ID=Ggra4876.t1|Name=Ggra4876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000090_pilon:427989..429221- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTCAACAAGTACAAGATGAGAAGTTCGGTGCGCACGTACAACCT
GGCTGGTATTGGATGCTCAGCAGGGATCATCTCTGTGGATCTAGGCAAAG
ACCTGCTGCAAGTGCATCGCAACGCCATCTGCGTTGTAGTATCAACGGGG
AACATCACGCAGAACTGGGACTTGGGACGAGTAAGCTCCATGCTGATCAC
AAACACGCTGTTTCGGATTGGTGGTGCGGCAGTGCTGTTGACCAACGAGG
CGAACAAAAAAAGAAGGGCGCGATACGTGCTCAAACACACGGTGCAAACT
CACGTGAGCGCAGATGATCTGGCGTACGACTCCATCTTTCAGATGGAGAA
CAAGACCGGTCTACGCGGCGTAAAGCTGTCCAAGAAAATCATGGACGTGG
CCGGCGGCGCGCTCAAGAAGAACGTGACCACGTTGGGGCCGAGCGTGTTC
CCGCTGACAGAACACATCAAGTCCGGTGTGCACCTGCCGCGCAAAAAAAT
ACTGGGGCAAGAGCTGGCGCCTTACATCCTGGACTTTTACATGGCGTTCC
AGCACTTTTGTATCCACACGGGAGGCAGGGCGGTGATTGACGTGATGCAG
AAGACTCTGAAAATGACGAGACAAGACGTGAAAGCGAGTTGGTACGCGTT
GACACGGTACGGCAACATGTCATCGGCGTCGCGCACCACCATGAAGAAGG
CCACCAACAACTACCGGTCGCTGCTGTCGCCGCTGCGCATGGGCTTGCTC
ACGCTTCGCAACTGCATCGTCATGGAGCCCATGGCGCGCGGTCGCGCCGG
CCCCAATATGACAGCCAACATGCTCATCGCTGAGTACTACGTGCAGAGCT
TCTCCGCCGGCCTCATCATCGCCAAGGGCACGCACACCCCTAAGATGGGG
GGCGGCTTCTTCCACACGCCTGAGATCTTCTCTGAAGAGCACCTAGGAGG
CTGA
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protein sequence of Ggra4876.t1

>Ggra4876.t1 ID=Ggra4876.t1|Name=Ggra4876.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MLVNKYKMRSSVRTYNLAGIGCSAGIISVDLGKDLLQVHRNAICVVVSTG
NITQNWDLGRVSSMLITNTLFRIGGAAVLLTNEANKKRRARYVLKHTVQT
HVSADDLAYDSIFQMENKTGLRGVKLSKKIMDVAGGALKKNVTTLGPSVF
PLTEHIKSGVHLPRKKILGQELAPYILDFYMAFQHFCIHTGGRAVIDVMQ
KTLKMTRQDVKASWYALTRYGNMSSASRTTMKKATNNYRSLLSPLRMGLL
TLRNCIVMEPMARGRAGPNMTANMLIAEYYVQSFSAGLIIAKGTHTPKMG
GGFFHTPEIFSEEHLGG*
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mRNA from alignment at tig00000090_pilon:427989..429221-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4876.t1 ID=Ggra4876.t1|Name=Ggra4876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000090_pilon:427989..429221- (Gracilaria gracilis GNS1m male)
ATGCTTGTCAACAAGTACAAGATGAGAAGTTCGGTGCGCACGTACAACCT
GGCTGGTATTGGATGCTCAGCAGGGATCATCTCTGTGGATCTAGGCAAAG
ACCTGCTGCAAGTGCATCGCAACGCCATCTGCGTTGTAGTATCAACGGGG
AACATCACGCAGAACTGGGACTTGGGACGAGTAAGCTCCATGCTGATCAC
AAACACGCTGTTTCGGATTGGTGGTGCGGCAGTGCTGTTGACCAACGAGG
CGAACAAAAAAAGAAGGGCGCGATACGTGCTCAAACACACGGTGCAAACT
CACGTGAGCGCAGATGATCTGGCGTACGACTCCATCTTTCAGATGGAGAA
CAAGACCGGTCTACGCGGCGTAAAGCTGTCCAAGAAAATCATGGACGTGG
CCGGCGGCGCGCTCAAGAAGAACGTGACCACGTTGGGGCCGAGCGTGTTC
CCGCTGACAGAACACATCAAGTCCGGTGTGCACCTGCCGCGCAAAAAAAT
ACTGGGGCAAGAGCTGGCGCCTTACATCCTGGACTTTTACATGGCGTTCC
AGCACTTTTGTATCCACACGGGAGGCAGGGCGGTGATTGACGTGATGCAG
AAGACTCTGAAAATGACGAGACAAGACGTGAAAGCGAGTTGGTACGCGTT
GACACGGTACGGCAACATGTCATCGGCGTCGGTGTGGTACGAACTCTAGT
TCCACGAGAACATGGAGGTTTTGATATGTCTCGAGCCGCGCGCTGTGCCA
ACTTACAGCTATTTTTGGGCCAAAGAACGTCGCGCAAACTCCGTCACTCC
TCGCCATCGCCGTATTCCCGTCGGCAAAAGCATCACCCCCGCCAGAGGCC
GTTCATGAACAGACGCTGCCCCTCTCACCATTTCCCAAAACCTTTCTCCC
GTCGCATCTGATCGTCGAGCAATCGCCAAGCACTTCCTTCCCTGCCGACT
ACCACCCCAGCGCACCACCATGAAGAAGGCCACCAACAACTACCGGTCGC
TGCTGTCGCCGCTGCGCATGGGCTTGCTCACGCTTCGCAACTGCATCGTC
ATGGAGCCCATGGCGCGCGGTCGCGCCGGCCCCAATATGACAGCCAACAT
GCTCATCGCTGAGTACTACGTGCAGAGCTTCTCCGCCGGCCTCATCATCG
CCAAGGGCACGCACACCCCTAAGATGGGGGGCGGCTTCTTCCACACGCCT
GAGATCTTCTCTGAAGAGCACCTAGGAGGCTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:427989..429221-

>Ggra4876.t1 ID=Ggra4876.t1|Name=Ggra4876.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000090_pilon:427989..429221- (Gracilaria gracilis GNS1m male)
ATGCTTGTCAACAAGTACAAGATGAGAAGTTCGGTGCGCACGTACAACCT
GGCTGGTATTGGATGCTCAGCAGGGATCATCTCTGTGGATCTAGGCAAAG
ACCTGCTGCAAGTGCATCGCAACGCCATCTGCGTTGTAGTATCAACGGGG
AACATCACGCAGAACTGGGACTTGGGACGAGTAAGCTCCATGCTGATCAC
AAACACGCTGTTTCGGATTGGTGGTGCGGCAGTGCTGTTGACCAACGAGG
CGAACAAAAAAAGAAGGGCGCGATACGTGCTCAAACACACGGTGCAAACT
CACGTGAGCGCAGATGATCTGGCGTACGACTCCATCTTTCAGATGGAGAA
CAAGACCGGTCTACGCGGCGTAAAGCTGTCCAAGAAAATCATGGACGTGG
CCGGCGGCGCGCTCAAGAAGAACGTGACCACGTTGGGGCCGAGCGTGTTC
CCGCTGACAGAACACATCAAGTCCGGTGTGCACCTGCCGCGCAAAAAAAT
ACTGGGGCAAGAGCTGGCGCCTTACATCCTGGACTTTTACATGGCGTTCC
AGCACTTTTGTATCCACACGGGAGGCAGGGCGGTGATTGACGTGATGCAG
AAGACTCTGAAAATGACGAGACAAGACGTGAAAGCGAGTTGGTACGCGTT
GACACGGTACGGCAACATGTCATCGGCGTCGCGCACCACCATGAAGAAGG
CCACCAACAACTACCGGTCGCTGCTGTCGCCGCTGCGCATGGGCTTGCTC
ACGCTTCGCAACTGCATCGTCATGGAGCCCATGGCGCGCGGTCGCGCCGG
CCCCAATATGACAGCCAACATGCTCATCGCTGAGTACTACGTGCAGAGCT
TCTCCGCCGGCCTCATCATCGCCAAGGGCACGCACACCCCTAAGATGGGG
GGCGGCTTCTTCCACACGCCTGAGATCTTCTCTGAAGAGCACCTAGGAGG
CTGA
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