Ggra4874.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4874.t1
Unique NameGgra4874.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:425713..426357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4874Ggra4874Gracilaria gracilis GNS1m malegenetig00000090_pilon 425713..426357 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4874.t1.start1Ggra4874.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 425713..425715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4874.t1.CDS1Ggra4874.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 425713..426357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4874.t1.exon1Ggra4874.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 425713..426357 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4874.t1.stop1Ggra4874.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 426355..426357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4874.t1Ggra4874.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 425713..426357 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4874.t1 ID=Ggra4874.t1|Name=Ggra4874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MFCPGETFPEPITDVCTGLVPPVKRTGQKLASFWRDNTSIGTEVVENHSV
SGNNSDLPCKDFCHVNARTNKLSAVGRRTLITYVVFGLDFEDVDHVFGQF
MTRELPSNAVGSLGVARNLKAGLGRKRKFSGSAQPSEGSKRTKSQRSSSE
DVIHEVLSGINSSMSKFANEYERNVDMHAKELDRRHRFEREDLYTSRVGS
SYLQDTMRYHCSLM*
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spliced messenger RNA

>Ggra4874.t1 ID=Ggra4874.t1|Name=Ggra4874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000090_pilon:425713..426357+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGCCCCGGTGAGACCTTTCCCGAGCCAATCACTGATGTTTGTAC
TGGATTAGTTCCTCCAGTGAAGCGCACTGGGCAGAAACTTGCATCATTCT
GGAGAGATAACACAAGTATCGGGACCGAGGTGGTCGAGAATCACAGCGTT
TCTGGCAATAACAGCGATTTACCGTGCAAGGATTTCTGCCACGTCAACGC
TCGGACGAACAAATTGTCTGCCGTTGGACGCCGCACGTTAATTACGTATG
TGGTGTTTGGTTTAGATTTCGAAGATGTTGACCATGTATTTGGGCAGTTT
ATGACTCGGGAATTGCCGAGCAATGCTGTGGGTAGCTTGGGAGTGGCTCG
CAATTTAAAAGCCGGGCTTGGAAGGAAGCGCAAGTTTTCAGGGAGTGCAC
AGCCATCGGAGGGTTCAAAGCGAACTAAATCGCAGCGAAGCAGTAGCGAA
GATGTGATTCACGAAGTTCTGTCGGGCATCAATTCTTCTATGAGCAAGTT
TGCCAATGAGTATGAGAGAAATGTGGATATGCATGCAAAGGAGCTGGATC
GGAGGCATAGATTTGAAAGAGAAGACCTCTACACATCGAGGGTTGGGAGC
AGCTATTTGCAAGATACTATGAGGTACCATTGTTCTTTAATGTAA
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protein sequence of Ggra4874.t1

>Ggra4874.t1 ID=Ggra4874.t1|Name=Ggra4874.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MFCPGETFPEPITDVCTGLVPPVKRTGQKLASFWRDNTSIGTEVVENHSV
SGNNSDLPCKDFCHVNARTNKLSAVGRRTLITYVVFGLDFEDVDHVFGQF
MTRELPSNAVGSLGVARNLKAGLGRKRKFSGSAQPSEGSKRTKSQRSSSE
DVIHEVLSGINSSMSKFANEYERNVDMHAKELDRRHRFEREDLYTSRVGS
SYLQDTMRYHCSLM*
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mRNA from alignment at tig00000090_pilon:425713..426357+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4874.t1 ID=Ggra4874.t1|Name=Ggra4874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000090_pilon:425713..426357+ (Gracilaria gracilis GNS1m male)
ATGTTTTGCCCCGGTGAGACCTTTCCCGAGCCAATCACTGATGTTTGTAC
TGGATTAGTTCCTCCAGTGAAGCGCACTGGGCAGAAACTTGCATCATTCT
GGAGAGATAACACAAGTATCGGGACCGAGGTGGTCGAGAATCACAGCGTT
TCTGGCAATAACAGCGATTTACCGTGCAAGGATTTCTGCCACGTCAACGC
TCGGACGAACAAATTGTCTGCCGTTGGACGCCGCACGTTAATTACGTATG
TGGTGTTTGGTTTAGATTTCGAAGATGTTGACCATGTATTTGGGCAGTTT
ATGACTCGGGAATTGCCGAGCAATGCTGTGGGTAGCTTGGGAGTGGCTCG
CAATTTAAAAGCCGGGCTTGGAAGGAAGCGCAAGTTTTCAGGGAGTGCAC
AGCCATCGGAGGGTTCAAAGCGAACTAAATCGCAGCGAAGCAGTAGCGAA
GATGTGATTCACGAAGTTCTGTCGGGCATCAATTCTTCTATGAGCAAGTT
TGCCAATGAGTATGAGAGAAATGTGGATATGCATGCAAAGGAGCTGGATC
GGAGGCATAGATTTGAAAGAGAAGACCTCTACACATCGAGGGTTGGGAGC
AGCTATTTGCAAGATACTATGAGGTACCATTGTTCTTTAATGTAA
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Coding sequence (CDS) from alignment at tig00000090_pilon:425713..426357+

>Ggra4874.t1 ID=Ggra4874.t1|Name=Ggra4874.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000090_pilon:425713..426357+ (Gracilaria gracilis GNS1m male)
ATGTTTTGCCCCGGTGAGACCTTTCCCGAGCCAATCACTGATGTTTGTAC
TGGATTAGTTCCTCCAGTGAAGCGCACTGGGCAGAAACTTGCATCATTCT
GGAGAGATAACACAAGTATCGGGACCGAGGTGGTCGAGAATCACAGCGTT
TCTGGCAATAACAGCGATTTACCGTGCAAGGATTTCTGCCACGTCAACGC
TCGGACGAACAAATTGTCTGCCGTTGGACGCCGCACGTTAATTACGTATG
TGGTGTTTGGTTTAGATTTCGAAGATGTTGACCATGTATTTGGGCAGTTT
ATGACTCGGGAATTGCCGAGCAATGCTGTGGGTAGCTTGGGAGTGGCTCG
CAATTTAAAAGCCGGGCTTGGAAGGAAGCGCAAGTTTTCAGGGAGTGCAC
AGCCATCGGAGGGTTCAAAGCGAACTAAATCGCAGCGAAGCAGTAGCGAA
GATGTGATTCACGAAGTTCTGTCGGGCATCAATTCTTCTATGAGCAAGTT
TGCCAATGAGTATGAGAGAAATGTGGATATGCATGCAAAGGAGCTGGATC
GGAGGCATAGATTTGAAAGAGAAGACCTCTACACATCGAGGGTTGGGAGC
AGCTATTTGCAAGATACTATGAGGTACCATTGTTCTTTAATGTAA
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