Ggra4871.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4871.t1
Unique NameGgra4871.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:403857..405453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709130.1
Preferred namePNPLA8
PFAMsPatatin
Max annot lvl2759|Eukaryota
KEGG koko:K16815
GOsGO:0000166,GO:0001516,GO:0001676,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006690,GO:0006692,GO:0006693,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009987,GO:0010876,GO:0012505,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016053,GO:0016298,GO:0016787,GO:0016788,GO:0017076,GO:0019369,GO:0019637,GO:0019752,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032309,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033559,GO:0034638,GO:0035639,GO:0036094,GO:0036151,GO:0036152,GO:0042175,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046338,GO:0046394,GO:0046434,GO:0046456,GO:0046457,GO:0046470,GO:0046475,GO:0046486,GO:0046503,GO:0046717,GO:0046903,GO:0046942,GO:0047499,GO:0050482,GO:0051179,GO:0051234,GO:0052689,GO:0071702,GO:0071704,GO:0071715,GO:0072330,GO:0097159,GO:0097164,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901571,GO:1901575,GO:1901576,GO:1903963
Evalue1.2e-35
EggNOG OGsKOG4231@1|root,KOG4231@2759|Eukaryota
Descriptionphosphatidylethanolamine catabolic process
COG categoryU
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4871Ggra4871Gracilaria gracilis GNS1m malegenetig00000090_pilon 403857..405453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4871.t1Ggra4871.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 403857..405453 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4871.t1.start1Ggra4871.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 403857..403859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4871.t1.CDS1Ggra4871.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 403857..404407 +
Ggra4871.t1.CDS2Ggra4871.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 404585..404840 +
Ggra4871.t1.CDS3Ggra4871.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000090_pilon 405157..405453 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4871.t1.exon1Ggra4871.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 403857..404407 +
Ggra4871.t1.exon2Ggra4871.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 404585..404840 +
Ggra4871.t1.exon3Ggra4871.t1.exon3Gracilaria gracilis GNS1m maleexontig00000090_pilon 405157..405453 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4871.t1.intron1Ggra4871.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 404408..404584 +
Ggra4871.t1.intron2Ggra4871.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000090_pilon 404841..405156 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4871.t1.stop1Ggra4871.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 405451..405453 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4871.t1 ID=Ggra4871.t1|Name=Ggra4871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MSTPVLPVQKRRCCPEPETPRARVQRAQIYDIMVLYEFGCEEIRRREEVS
DEHVVALLPYDRQRKVLDEIVSSKQVKFGQDKDGVEETDDANGVLMNGLR
GVAGNAVRLVTFRDVSNGKAANEECVSAAGYAAPVEHESHMTVDAKVGTS
AASAYALQQRWRHQILYQTGTNQNWLNLRLLLQRSLALKMGVRQEARKVM
ALRERAYYGSYSFSWRNNERRARRYSAGGAEALGAIGVNKWRPIMPGQRG
LRIVCIHGGGTFAIMALATLKQLNRITGREIHEMLDIIRNMTTGAIVAAS
IGIVHKTVDEVEMLYRDMIEKIFANPPATGPKMLLTRAYYDTNVLESALK
HECGKGIFESMAEYNMN*
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spliced messenger RNA

>Ggra4871.t1 ID=Ggra4871.t1|Name=Ggra4871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000090_pilon:403857..405453+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACACCGGTGCTTCCAGTGCAGAAGCGTCGTTGTTGTCCGGAACC
TGAAACGCCGAGAGCACGTGTGCAACGAGCCCAAATCTATGATATTATGG
TATTATATGAGTTCGGTTGCGAAGAAATTCGACGGCGGGAAGAAGTCAGT
GATGAACACGTTGTGGCTCTCCTCCCCTATGATCGTCAGAGAAAGGTCCT
TGACGAAATCGTATCCAGCAAACAAGTCAAATTTGGACAGGACAAAGATG
GGGTCGAAGAGACGGATGATGCTAACGGTGTGTTGATGAATGGCCTACGC
GGGGTTGCGGGGAATGCTGTAAGACTGGTCACGTTTCGAGACGTAAGCAA
CGGTAAAGCGGCAAACGAAGAGTGCGTTTCGGCAGCAGGATATGCTGCGC
CTGTGGAGCACGAGAGCCACATGACCGTTGATGCGAAAGTGGGAACCTCT
GCGGCTTCTGCGTATGCGCTGCAGCAGCGATGGCGACATCAGATTTTGTA
TCAAACCGGAACGAATCAGAATTGGTTGAACTTAAGGCTGCTGTTGCAGC
GATCTCTGGCATTGAAAATGGGTGTAAGACAAGAAGCAAGGAAGGTGATG
GCATTGCGAGAAAGAGCTTATTACGGGTCTTACTCGTTTTCCTGGCGGAA
TAATGAACGGAGAGCCCGAAGGTACAGCGCGGGCGGCGCGGAAGCACTTG
GTGCGATTGGTGTGAACAAGTGGAGACCAATAATGCCCGGCCAGAGGGGC
TTACGTATTGTGTGCATTCATGGTGGTGGTACTTTTGCAATCATGGCGCT
CGCAACTCTTAAACAGCTCAATAGAATCACAGGTCGTGAGATTCATGAGA
TGTTGGACATCATTCGCAATATGACCACGGGTGCAATTGTGGCAGCTTCT
ATCGGTATTGTTCATAAAACGGTCGACGAGGTCGAAATGCTGTATAGAGA
CATGATTGAGAAGATATTTGCAAATCCCCCGGCGACCGGTCCTAAGATGT
TGCTGACACGTGCATACTACGATACAAATGTACTAGAATCAGCTCTGAAG
CACGAGTGTGGAAAAGGCATCTTCGAGTCTATGGCTGAATACAACATGAA
TTGA
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protein sequence of Ggra4871.t1

>Ggra4871.t1 ID=Ggra4871.t1|Name=Ggra4871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MSTPVLPVQKRRCCPEPETPRARVQRAQIYDIMVLYEFGCEEIRRREEVS
DEHVVALLPYDRQRKVLDEIVSSKQVKFGQDKDGVEETDDANGVLMNGLR
GVAGNAVRLVTFRDVSNGKAANEECVSAAGYAAPVEHESHMTVDAKVGTS
AASAYALQQRWRHQILYQTGTNQNWLNLRLLLQRSLALKMGVRQEARKVM
ALRERAYYGSYSFSWRNNERRARRYSAGGAEALGAIGVNKWRPIMPGQRG
LRIVCIHGGGTFAIMALATLKQLNRITGREIHEMLDIIRNMTTGAIVAAS
IGIVHKTVDEVEMLYRDMIEKIFANPPATGPKMLLTRAYYDTNVLESALK
HECGKGIFESMAEYNMN*
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mRNA from alignment at tig00000090_pilon:403857..405453+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4871.t1 ID=Ggra4871.t1|Name=Ggra4871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1597bp|location=Sequence derived from alignment at tig00000090_pilon:403857..405453+ (Gracilaria gracilis GNS1m male)
ATGTCCACACCGGTGCTTCCAGTGCAGAAGCGTCGTTGTTGTCCGGAACC
TGAAACGCCGAGAGCACGTGTGCAACGAGCCCAAATCTATGATATTATGG
TATTATATGAGTTCGGTTGCGAAGAAATTCGACGGCGGGAAGAAGTCAGT
GATGAACACGTTGTGGCTCTCCTCCCCTATGATCGTCAGAGAAAGGTCCT
TGACGAAATCGTATCCAGCAAACAAGTCAAATTTGGACAGGACAAAGATG
GGGTCGAAGAGACGGATGATGCTAACGGTGTGTTGATGAATGGCCTACGC
GGGGTTGCGGGGAATGCTGTAAGACTGGTCACGTTTCGAGACGTAAGCAA
CGGTAAAGCGGCAAACGAAGAGTGCGTTTCGGCAGCAGGATATGCTGCGC
CTGTGGAGCACGAGAGCCACATGACCGTTGATGCGAAAGTGGGAACCTCT
GCGGCTTCTGCGTATGCGCTGCAGCAGCGATGGCGACATCAGATTTTGTA
TCAAACCGGAACGAATCAGAATTGGTTGAACTTAAGGCTGCTGTTGCAGC
GGTACGTGAAGCAACGGCGTAGACTGCGCTGGCCAATCTAGCCATCATTG
TGCCGAAGTCACGCACTGCTATCCTGAACTTTATTGGAAACATTGTTCAG
GACTTATCCAATATCATTCACTAGTCAGGTTGCTTTCGGTCACAGGCTGT
GAGAGGTCTCCGGCACCCACCTGCTTAGATCTCTGGCATTGAAAATGGGT
GTAAGACAAGAAGCAAGGAAGGTGATGGCATTGCGAGAAAGAGCTTATTA
CGGGTCTTACTCGTTTTCCTGGCGGAATAATGAACGGAGAGCCCGAAGGT
ACAGCGCGGGCGGCGCGGAAGCACTTGGTGCGATTGGTGTGAACAAGTGG
AGACCAATAATGCCCGGCCAGAGGGGCTTACGTATTGTGTGCATTCATGG
TGGTGGTACTTTTGCAATCATGGCGCTCGCAACTGTACGTGTTCTCCGGA
ACACGTATTTTCCAGGGAAGTCAGATCAAGCCTGTGTTCCAATTGAAAGT
AATCTAATGCATTATGTGTAAGGTTTACTAACAATGGGATCATCCAAAAA
AGGTCACTTCGGCACTTGccaaagtgtcggggtgcagccggtctttcata
cccgctgcagaacggcagagtagggagacctcccaacaaattcacttcca
gtcttcggcaggcggatggctcaaacgtatgtggagtgcagcagtgatca
attcttggatgatcccaatATCTCACGTTCTGCGTCGTTGGTATTTGCAG
CTTAAACAGCTCAATAGAATCACAGGTCGTGAGATTCATGAGATGTTGGA
CATCATTCGCAATATGACCACGGGTGCAATTGTGGCAGCTTCTATCGGTA
TTGTTCATAAAACGGTCGACGAGGTCGAAATGCTGTATAGAGACATGATT
GAGAAGATATTTGCAAATCCCCCGGCGACCGGTCCTAAGATGTTGCTGAC
ACGTGCATACTACGATACAAATGTACTAGAATCAGCTCTGAAGCACGAGT
GTGGAAAAGGCATCTTCGAGTCTATGGCTGAATACAACATGAATTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:403857..405453+

>Ggra4871.t1 ID=Ggra4871.t1|Name=Ggra4871.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000090_pilon:403857..405453+ (Gracilaria gracilis GNS1m male)
ATGTCCACACCGGTGCTTCCAGTGCAGAAGCGTCGTTGTTGTCCGGAACC
TGAAACGCCGAGAGCACGTGTGCAACGAGCCCAAATCTATGATATTATGG
TATTATATGAGTTCGGTTGCGAAGAAATTCGACGGCGGGAAGAAGTCAGT
GATGAACACGTTGTGGCTCTCCTCCCCTATGATCGTCAGAGAAAGGTCCT
TGACGAAATCGTATCCAGCAAACAAGTCAAATTTGGACAGGACAAAGATG
GGGTCGAAGAGACGGATGATGCTAACGGTGTGTTGATGAATGGCCTACGC
GGGGTTGCGGGGAATGCTGTAAGACTGGTCACGTTTCGAGACGTAAGCAA
CGGTAAAGCGGCAAACGAAGAGTGCGTTTCGGCAGCAGGATATGCTGCGC
CTGTGGAGCACGAGAGCCACATGACCGTTGATGCGAAAGTGGGAACCTCT
GCGGCTTCTGCGTATGCGCTGCAGCAGCGATGGCGACATCAGATTTTGTA
TCAAACCGGAACGAATCAGAATTGGTTGAACTTAAGGCTGCTGTTGCAGC
GATCTCTGGCATTGAAAATGGGTGTAAGACAAGAAGCAAGGAAGGTGATG
GCATTGCGAGAAAGAGCTTATTACGGGTCTTACTCGTTTTCCTGGCGGAA
TAATGAACGGAGAGCCCGAAGGTACAGCGCGGGCGGCGCGGAAGCACTTG
GTGCGATTGGTGTGAACAAGTGGAGACCAATAATGCCCGGCCAGAGGGGC
TTACGTATTGTGTGCATTCATGGTGGTGGTACTTTTGCAATCATGGCGCT
CGCAACTCTTAAACAGCTCAATAGAATCACAGGTCGTGAGATTCATGAGA
TGTTGGACATCATTCGCAATATGACCACGGGTGCAATTGTGGCAGCTTCT
ATCGGTATTGTTCATAAAACGGTCGACGAGGTCGAAATGCTGTATAGAGA
CATGATTGAGAAGATATTTGCAAATCCCCCGGCGACCGGTCCTAAGATGT
TGCTGACACGTGCATACTACGATACAAATGTACTAGAATCAGCTCTGAAG
CACGAGTGTGGAAAAGGCATCTTCGAGTCTATGGCTGAATACAACATGAA
TTGA
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