Ggra4866.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4866.t1
Unique NameGgra4866.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:332129..332608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_006752-tr
Preferred nameADAT2
PFAMsMafB19-deam,dCMP_cyt_deam_1
Max annot lvl33208|Metazoa
KEGG koko:K15441
GOsGO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Evalue2.11e-36
EggNOG OGsCOG0590@1|root,KOG1018@2759|Eukaryota,39W0M@33154|Opisthokonta,3BJII@33208|Metazoa,3D0W4@33213|Bilateria
DescriptiontRNA-specific adenosine-34 deaminase activity
COG categoryF
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4866Ggra4866Gracilaria gracilis GNS1m malegenetig00000090_pilon 332129..332608 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4866.t1.stop1Ggra4866.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 332129..332131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4866.t1.CDS1Ggra4866.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 332129..332608 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4866.t1.exon1Ggra4866.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 332129..332608 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4866.t1.start1Ggra4866.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 332606..332608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4866.t1Ggra4866.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 332129..332608 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4866.t1 ID=Ggra4866.t1|Name=Ggra4866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MQRAICEARNALQRGEVPVGCVLCTADGTVVATGSNRTNERGNATSHAEM
VAFEQLSRLNRSFEQGELSLFVTCEPCIMCASAITQMQVVGRVVYGCSNP
RFGGCGSVRSLALYERCSQAHVPTVQGGVEAATAVQLLAEFYKRSNPHAP
KPKRRRIKQ*
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spliced messenger RNA

>Ggra4866.t1 ID=Ggra4866.t1|Name=Ggra4866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000090_pilon:332129..332608- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCGCCATCTGCGAGGCAAGGAACGCTCTGCAACGCGGCGAGGT
ACCCGTGGGTTGCGTGCTTTGTACAGCGGACGGCACCGTGGTTGCAACCG
GCTCCAACCGCACCAACGAGCGAGGAAACGCCACCTCGCACGCCGAAATG
GTGGCGTTTGAACAGCTCTCTCGACTCAACAGGTCGTTCGAGCAAGGCGA
GTTGAGCCTGTTCGTCACGTGCGAGCCGTGCATCATGTGCGCGTCGGCCA
TTACGCAGATGCAAGTGGTGGGGCGTGTTGTATACGGCTGTTCCAACCCT
CGCTTTGGCGGCTGCGGCTCTGTGCGATCGCTGGCTTTGTACGAGCGCTG
TTCGCAAGCGCACGTCCCCACGGTGCAGGGCGGCGTCGAGGCTGCTACTG
CTGTGCAACTGCTCGCCGAGTTTTACAAACGATCCAATCCGCATGCGCCC
AAGCCGAAGCGACGGCGAATAAAGCAGTGA
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protein sequence of Ggra4866.t1

>Ggra4866.t1 ID=Ggra4866.t1|Name=Ggra4866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MQRAICEARNALQRGEVPVGCVLCTADGTVVATGSNRTNERGNATSHAEM
VAFEQLSRLNRSFEQGELSLFVTCEPCIMCASAITQMQVVGRVVYGCSNP
RFGGCGSVRSLALYERCSQAHVPTVQGGVEAATAVQLLAEFYKRSNPHAP
KPKRRRIKQ*
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mRNA from alignment at tig00000090_pilon:332129..332608-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4866.t1 ID=Ggra4866.t1|Name=Ggra4866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000090_pilon:332129..332608- (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCCATCTGCGAGGCAAGGAACGCTCTGCAACGCGGCGAGGT
ACCCGTGGGTTGCGTGCTTTGTACAGCGGACGGCACCGTGGTTGCAACCG
GCTCCAACCGCACCAACGAGCGAGGAAACGCCACCTCGCACGCCGAAATG
GTGGCGTTTGAACAGCTCTCTCGACTCAACAGGTCGTTCGAGCAAGGCGA
GTTGAGCCTGTTCGTCACGTGCGAGCCGTGCATCATGTGCGCGTCGGCCA
TTACGCAGATGCAAGTGGTGGGGCGTGTTGTATACGGCTGTTCCAACCCT
CGCTTTGGCGGCTGCGGCTCTGTGCGATCGCTGGCTTTGTACGAGCGCTG
TTCGCAAGCGCACGTCCCCACGGTGCAGGGCGGCGTCGAGGCTGCTACTG
CTGTGCAACTGCTCGCCGAGTTTTACAAACGATCCAATCCGCATGCGCCC
AAGCCGAAGCGACGGCGAATAAAGCAGTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:332129..332608-

>Ggra4866.t1 ID=Ggra4866.t1|Name=Ggra4866.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000090_pilon:332129..332608- (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCCATCTGCGAGGCAAGGAACGCTCTGCAACGCGGCGAGGT
ACCCGTGGGTTGCGTGCTTTGTACAGCGGACGGCACCGTGGTTGCAACCG
GCTCCAACCGCACCAACGAGCGAGGAAACGCCACCTCGCACGCCGAAATG
GTGGCGTTTGAACAGCTCTCTCGACTCAACAGGTCGTTCGAGCAAGGCGA
GTTGAGCCTGTTCGTCACGTGCGAGCCGTGCATCATGTGCGCGTCGGCCA
TTACGCAGATGCAAGTGGTGGGGCGTGTTGTATACGGCTGTTCCAACCCT
CGCTTTGGCGGCTGCGGCTCTGTGCGATCGCTGGCTTTGTACGAGCGCTG
TTCGCAAGCGCACGTCCCCACGGTGCAGGGCGGCGTCGAGGCTGCTACTG
CTGTGCAACTGCTCGCCGAGTTTTACAAACGATCCAATCCGCATGCGCCC
AAGCCGAAGCGACGGCGAATAAAGCAGTGA
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