Ggra4863.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4863.t1
Unique Name	Ggra4863.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	792

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:319393..321768 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4863	Ggra4863	Gracilaria gracilis GNS1m male	gene	tig00000090_pilon 319393..321768 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4863.t1.stop1	Ggra4863.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000090_pilon 319393..319395 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4863.t1.CDS1	Ggra4863.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000090_pilon 319393..321768 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4863.t1.exon1	Ggra4863.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000090_pilon 319393..321768 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4863.t1.start1	Ggra4863.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000090_pilon 321766..321768 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4863.t1	Ggra4863.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000090_pilon 319393..321768 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000090_pilon:319393..321768-
coding sequence from alignment at tig00000090_pilon:319393..321768-

mRNA sequence

>Ggra4863.t1 ID=Ggra4863.t1|Name=Ggra4863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp
MSVSAQRSTKGVLRNLHKLTDALLEENGRLHTALADANAQIAALHAALEL
LRRDVAARDRYDGEVRDYVAAIIGDIQRQYKPVVDHASPAADAIATSPVR
TALADIHAESQRPPPANDDNPLSPPSSTADEAVVSDAPLSEEEATQPTTK
QPAEHMEAQTAHDSEPELEAQSAEQQAVQTREAIILAPQQHEEHQQLHEP
LPEPEQAQRTLHHNEGSTHELQEQDMEAPVPQQPEVTRSVPTEHEQLAVH
EEEEEQPSEGEYSAEGPTPIEQHEAQFDHTQPELHEEESHDEAEPTHEDI
HSDEDRTQSQGSANIEATRSITAVDTTAHVEQMSHDEEPQLDDEALDVSH
LTGVLVPEPSEPLQRHSDEEPPLASLLDPSTVPKQVKPGTEGTEQEQSEG
QPEHSEQVDHSDELHDLSQDAPEEVRRQSMSSKGVSDDSEYQYHSGDTSG
HEGPDVDNIAPQVGEEIQQHQEGGPSTHVVDPNPYNSPTQPVASSSQPRL
KTIVSLPFAADVVQKPGDSPHEVAQKIYEAGGQNYESCSSVFRVIRKKRS
SVSDSGEEDDDEQHNIEFVTLRRQTAEVLPWKARKGSDYIDVTNGALAVK
PLAAVASRFGTASLSANLRVLEPLRMPASRKDFCYISPEYPDGTSLPYVP
VNNVILQHQPRDWVGEEYGVNKVRLSFQKHVFEEVKSIAIEAYKEKYPGS
NVMCDSTVTPKRARKIVDLDADAQVDVSVFLGRPIRLGIPEALSLIELDI
VGLVLLYIGVNAKNDDGSEAELAFRIHSMVMKRAVRKKLDK*

spliced messenger RNA

>Ggra4863.t1 ID=Ggra4863.t1|Name=Ggra4863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2376bp|location=Sequence derived from alignment at tig00000090_pilon:319393..321768- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTGAGTGCGCAGCGCTCCACCAAGGGAGTGCTCCGCAACCTGCA
CAAGCTCACCGACGCGCTGCTGGAGGAGAACGGTCGACTGCACACCGCGC
TTGCCGACGCCAATGCGCAGATAGCCGCGTTGCACGCCGCGCTGGAGCTG
CTGCGTCGCGATGTGGCCGCTCGTGATCGCTATGACGGCGAGGTTAGAGA
CTATGTGGCTGCCATAATTGGCGACATTCAGCGTCAGTACAAGCCGGTTG
TGGATCACGCTTCTCCAGCGGCCGATGCAATCGCCACCTCTCCGGTTCGC
ACCGCTCTGGCCGATATCCACGCTGAATCGCAGCGTCCTCCGCCTGCCAA
TGATGACAACCCCCTGTCGCCTCCATCCTCAACCGCTGATGAAGCTGTTG
TTTCAGACGCCCCGCTTTCCGAAGAGGAAGCCACGCAGCCAACCACCAAA
CAGCCTGCTGAGCACATGGAAGCACAAACTGCTCATGACAGTGAACCGGA
GCTTGAAGCCCAAAGTGCCGAGCAGCAAGCTGTTCAAACGCGTGAGGCAA
TCATTCTGGCACCCCAGCAACATGAGGAGCACCAACAACTGCACGAGCCG
TTGCCGGAGCCGGAACAAGCTCAACGAACTCTTCATCACAATGAGGGAAG
CACACACGAGCTCCAGGAGCAGGATATGGAAGCGCCTGTCCCTCAACAAC
CGGAAGTAACGCGTTCGGTGCCCACTGAACACGAGCAGCTCGCAGTGCAT
GAAGAAGAAGAAGAACAGCCTTCTGAGGGAGAGTACAGTGCTGAGGGACC
TACTCCCATTGAACAACACGAAGCGCAATTCGACCACACCCAGCCGGAGC
TTCATGAGGAAGAAAGCCACGATGAGGCAGAGCCCACTCACGAAGATATT
CACTCCGATGAGGACAGGACCCAGTCTCAAGGCAGCGCCAATATCGAAGC
AACCCGATCTATTACAGCTGTCGATACAACCGCTCACGTGGAACAGATGT
CTCATGATGAGGAACCGCAGCTTGACGACGAAGCTTTGGATGTTTCTCAC
CTCACGGGAGTTTTGGTCCCTGAGCCATCAGAACCACTTCAACGTCATTC
CGATGAAGAGCCCCCATTAGCATCCTTGCTTGACCCGTCTACCGTACCCA
AACAAGTGAAGCCTGGCACGGAGGGAACCGAGCAGGAACAGAGTGAAGGC
CAACCAGAACACTCTGAACAAGTTGACCATTCGGACGAACTACATGACCT
TTCGCAAGACGCTCCCGAGGAAGTCCGTCGCCAGTCCATGTCTTCAAAAG
GCGTTTCCGACGACTCGGAATATCAGTATCACAGCGGTGATACCTCAGGC
CATGAAGGCCCAGATGTCGACAACATTGCTCCACAAGTGGGAGAGGAAAT
CCAGCAACATCAAGAAGGGGGGCCGTCCACACACGTTGTCGATCCGAACC
CATACAACTCTCCTACACAACCTGTTGCTTCCTCATCTCAACCGCGCTTG
AAAACCATAGTCAGCCTTCCCTTCGCAGCTGATGTTGTACAAAAACCCGG
TGATTCTCCTCATGAAGTTGCCCAGAAAATCTACGAGGCTGGCGGTCAGA
ACTATGAGTCATGTTCCTCTGTCTTCCGCGTCATTCGCAAAAAACGCAGT
TCCGTCTCTGATTCGGGGGAGGAAGATGATGACGAGCAGCACAATATTGA
ATTTGTCACCTTGCGTCGCCAAACGGCAGAAGTTTTACCTTGGAAAGCAC
GAAAGGGTAGTGATTACATCGACGTGACAAACGGTGCTCTGGCTGTGAAG
CCACTCGCAGCAGTTGCATCTCGGTTTGGTACTGCTTCTTTGAGTGCCAA
TCTTAGAGTTCTTGAACCGCTTCGGATGCCAGCCAGTCGAAAAGACTTTT
GCTACATCAGTCCGGAGTATCCCGATGGTACCTCTCTTCCGTACGTACCA
GTGAACAATGTAATTTTACAACACCAGCCTCGTGACTGGGTTGGAGAAGA
GTACGGCGTGAACAAAGTTCGACTATCGTTTCAAAAGCACGTATTTGAAG
AAGTTAAGTCAATTGCGATTGAGGCATACAAGGAAAAGTATCCAGGATCA
AACGTCATGTGTGATAGTACAGTAACCCCAAAACGAGCTCGGAAGATTGT
CGACCTGGACGCAGATGCCCAGGTGGACGTCTCCGTGTTCCTCGGGAGGC
CAATACGCTTAGGAATCCCTGAAGCCCTGTCTCTCATTGAGCTTGACATT
GTTGGATTAGTACTGCTGTACATTGGCGTCAATGCGAAGAATGATGACGG
CTCAGAAGCAGAGCTGGCGTTCAGAATTCATTCAATGGTCATGAAACGAG
CCGTGAGGAAGAAGCTCGACAAGTGA

protein sequence of Ggra4863.t1

>Ggra4863.t1 ID=Ggra4863.t1|Name=Ggra4863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=792bp
MSVSAQRSTKGVLRNLHKLTDALLEENGRLHTALADANAQIAALHAALEL
LRRDVAARDRYDGEVRDYVAAIIGDIQRQYKPVVDHASPAADAIATSPVR
TALADIHAESQRPPPANDDNPLSPPSSTADEAVVSDAPLSEEEATQPTTK
QPAEHMEAQTAHDSEPELEAQSAEQQAVQTREAIILAPQQHEEHQQLHEP
LPEPEQAQRTLHHNEGSTHELQEQDMEAPVPQQPEVTRSVPTEHEQLAVH
EEEEEQPSEGEYSAEGPTPIEQHEAQFDHTQPELHEEESHDEAEPTHEDI
HSDEDRTQSQGSANIEATRSITAVDTTAHVEQMSHDEEPQLDDEALDVSH
LTGVLVPEPSEPLQRHSDEEPPLASLLDPSTVPKQVKPGTEGTEQEQSEG
QPEHSEQVDHSDELHDLSQDAPEEVRRQSMSSKGVSDDSEYQYHSGDTSG
HEGPDVDNIAPQVGEEIQQHQEGGPSTHVVDPNPYNSPTQPVASSSQPRL
KTIVSLPFAADVVQKPGDSPHEVAQKIYEAGGQNYESCSSVFRVIRKKRS
SVSDSGEEDDDEQHNIEFVTLRRQTAEVLPWKARKGSDYIDVTNGALAVK
PLAAVASRFGTASLSANLRVLEPLRMPASRKDFCYISPEYPDGTSLPYVP
VNNVILQHQPRDWVGEEYGVNKVRLSFQKHVFEEVKSIAIEAYKEKYPGS
NVMCDSTVTPKRARKIVDLDADAQVDVSVFLGRPIRLGIPEALSLIELDI
VGLVLLYIGVNAKNDDGSEAELAFRIHSMVMKRAVRKKLDK*

mRNA from alignment at tig00000090_pilon:319393..321768-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4863.t1 ID=Ggra4863.t1|Name=Ggra4863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2376bp|location=Sequence derived from alignment at tig00000090_pilon:319393..321768- (Gracilaria gracilis GNS1m male)
ATGTCCGTGAGTGCGCAGCGCTCCACCAAGGGAGTGCTCCGCAACCTGCA
CAAGCTCACCGACGCGCTGCTGGAGGAGAACGGTCGACTGCACACCGCGC
TTGCCGACGCCAATGCGCAGATAGCCGCGTTGCACGCCGCGCTGGAGCTG
CTGCGTCGCGATGTGGCCGCTCGTGATCGCTATGACGGCGAGGTTAGAGA
CTATGTGGCTGCCATAATTGGCGACATTCAGCGTCAGTACAAGCCGGTTG
TGGATCACGCTTCTCCAGCGGCCGATGCAATCGCCACCTCTCCGGTTCGC
ACCGCTCTGGCCGATATCCACGCTGAATCGCAGCGTCCTCCGCCTGCCAA
TGATGACAACCCCCTGTCGCCTCCATCCTCAACCGCTGATGAAGCTGTTG
TTTCAGACGCCCCGCTTTCCGAAGAGGAAGCCACGCAGCCAACCACCAAA
CAGCCTGCTGAGCACATGGAAGCACAAACTGCTCATGACAGTGAACCGGA
GCTTGAAGCCCAAAGTGCCGAGCAGCAAGCTGTTCAAACGCGTGAGGCAA
TCATTCTGGCACCCCAGCAACATGAGGAGCACCAACAACTGCACGAGCCG
TTGCCGGAGCCGGAACAAGCTCAACGAACTCTTCATCACAATGAGGGAAG
CACACACGAGCTCCAGGAGCAGGATATGGAAGCGCCTGTCCCTCAACAAC
CGGAAGTAACGCGTTCGGTGCCCACTGAACACGAGCAGCTCGCAGTGCAT
GAAGAAGAAGAAGAACAGCCTTCTGAGGGAGAGTACAGTGCTGAGGGACC
TACTCCCATTGAACAACACGAAGCGCAATTCGACCACACCCAGCCGGAGC
TTCATGAGGAAGAAAGCCACGATGAGGCAGAGCCCACTCACGAAGATATT
CACTCCGATGAGGACAGGACCCAGTCTCAAGGCAGCGCCAATATCGAAGC
AACCCGATCTATTACAGCTGTCGATACAACCGCTCACGTGGAACAGATGT
CTCATGATGAGGAACCGCAGCTTGACGACGAAGCTTTGGATGTTTCTCAC
CTCACGGGAGTTTTGGTCCCTGAGCCATCAGAACCACTTCAACGTCATTC
CGATGAAGAGCCCCCATTAGCATCCTTGCTTGACCCGTCTACCGTACCCA
AACAAGTGAAGCCTGGCACGGAGGGAACCGAGCAGGAACAGAGTGAAGGC
CAACCAGAACACTCTGAACAAGTTGACCATTCGGACGAACTACATGACCT
TTCGCAAGACGCTCCCGAGGAAGTCCGTCGCCAGTCCATGTCTTCAAAAG
GCGTTTCCGACGACTCGGAATATCAGTATCACAGCGGTGATACCTCAGGC
CATGAAGGCCCAGATGTCGACAACATTGCTCCACAAGTGGGAGAGGAAAT
CCAGCAACATCAAGAAGGGGGGCCGTCCACACACGTTGTCGATCCGAACC
CATACAACTCTCCTACACAACCTGTTGCTTCCTCATCTCAACCGCGCTTG
AAAACCATAGTCAGCCTTCCCTTCGCAGCTGATGTTGTACAAAAACCCGG
TGATTCTCCTCATGAAGTTGCCCAGAAAATCTACGAGGCTGGCGGTCAGA
ACTATGAGTCATGTTCCTCTGTCTTCCGCGTCATTCGCAAAAAACGCAGT
TCCGTCTCTGATTCGGGGGAGGAAGATGATGACGAGCAGCACAATATTGA
ATTTGTCACCTTGCGTCGCCAAACGGCAGAAGTTTTACCTTGGAAAGCAC
GAAAGGGTAGTGATTACATCGACGTGACAAACGGTGCTCTGGCTGTGAAG
CCACTCGCAGCAGTTGCATCTCGGTTTGGTACTGCTTCTTTGAGTGCCAA
TCTTAGAGTTCTTGAACCGCTTCGGATGCCAGCCAGTCGAAAAGACTTTT
GCTACATCAGTCCGGAGTATCCCGATGGTACCTCTCTTCCGTACGTACCA
GTGAACAATGTAATTTTACAACACCAGCCTCGTGACTGGGTTGGAGAAGA
GTACGGCGTGAACAAAGTTCGACTATCGTTTCAAAAGCACGTATTTGAAG
AAGTTAAGTCAATTGCGATTGAGGCATACAAGGAAAAGTATCCAGGATCA
AACGTCATGTGTGATAGTACAGTAACCCCAAAACGAGCTCGGAAGATTGT
CGACCTGGACGCAGATGCCCAGGTGGACGTCTCCGTGTTCCTCGGGAGGC
CAATACGCTTAGGAATCCCTGAAGCCCTGTCTCTCATTGAGCTTGACATT
GTTGGATTAGTACTGCTGTACATTGGCGTCAATGCGAAGAATGATGACGG
CTCAGAAGCAGAGCTGGCGTTCAGAATTCATTCAATGGTCATGAAACGAG
CCGTGAGGAAGAAGCTCGACAAGTGA

Coding sequence (CDS) from alignment at tig00000090_pilon:319393..321768-

>Ggra4863.t1 ID=Ggra4863.t1|Name=Ggra4863.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2376bp|location=Sequence derived from alignment at tig00000090_pilon:319393..321768- (Gracilaria gracilis GNS1m male)
ATGTCCGTGAGTGCGCAGCGCTCCACCAAGGGAGTGCTCCGCAACCTGCA
CAAGCTCACCGACGCGCTGCTGGAGGAGAACGGTCGACTGCACACCGCGC
TTGCCGACGCCAATGCGCAGATAGCCGCGTTGCACGCCGCGCTGGAGCTG
CTGCGTCGCGATGTGGCCGCTCGTGATCGCTATGACGGCGAGGTTAGAGA
CTATGTGGCTGCCATAATTGGCGACATTCAGCGTCAGTACAAGCCGGTTG
TGGATCACGCTTCTCCAGCGGCCGATGCAATCGCCACCTCTCCGGTTCGC
ACCGCTCTGGCCGATATCCACGCTGAATCGCAGCGTCCTCCGCCTGCCAA
TGATGACAACCCCCTGTCGCCTCCATCCTCAACCGCTGATGAAGCTGTTG
TTTCAGACGCCCCGCTTTCCGAAGAGGAAGCCACGCAGCCAACCACCAAA
CAGCCTGCTGAGCACATGGAAGCACAAACTGCTCATGACAGTGAACCGGA
GCTTGAAGCCCAAAGTGCCGAGCAGCAAGCTGTTCAAACGCGTGAGGCAA
TCATTCTGGCACCCCAGCAACATGAGGAGCACCAACAACTGCACGAGCCG
TTGCCGGAGCCGGAACAAGCTCAACGAACTCTTCATCACAATGAGGGAAG
CACACACGAGCTCCAGGAGCAGGATATGGAAGCGCCTGTCCCTCAACAAC
CGGAAGTAACGCGTTCGGTGCCCACTGAACACGAGCAGCTCGCAGTGCAT
GAAGAAGAAGAAGAACAGCCTTCTGAGGGAGAGTACAGTGCTGAGGGACC
TACTCCCATTGAACAACACGAAGCGCAATTCGACCACACCCAGCCGGAGC
TTCATGAGGAAGAAAGCCACGATGAGGCAGAGCCCACTCACGAAGATATT
CACTCCGATGAGGACAGGACCCAGTCTCAAGGCAGCGCCAATATCGAAGC
AACCCGATCTATTACAGCTGTCGATACAACCGCTCACGTGGAACAGATGT
CTCATGATGAGGAACCGCAGCTTGACGACGAAGCTTTGGATGTTTCTCAC
CTCACGGGAGTTTTGGTCCCTGAGCCATCAGAACCACTTCAACGTCATTC
CGATGAAGAGCCCCCATTAGCATCCTTGCTTGACCCGTCTACCGTACCCA
AACAAGTGAAGCCTGGCACGGAGGGAACCGAGCAGGAACAGAGTGAAGGC
CAACCAGAACACTCTGAACAAGTTGACCATTCGGACGAACTACATGACCT
TTCGCAAGACGCTCCCGAGGAAGTCCGTCGCCAGTCCATGTCTTCAAAAG
GCGTTTCCGACGACTCGGAATATCAGTATCACAGCGGTGATACCTCAGGC
CATGAAGGCCCAGATGTCGACAACATTGCTCCACAAGTGGGAGAGGAAAT
CCAGCAACATCAAGAAGGGGGGCCGTCCACACACGTTGTCGATCCGAACC
CATACAACTCTCCTACACAACCTGTTGCTTCCTCATCTCAACCGCGCTTG
AAAACCATAGTCAGCCTTCCCTTCGCAGCTGATGTTGTACAAAAACCCGG
TGATTCTCCTCATGAAGTTGCCCAGAAAATCTACGAGGCTGGCGGTCAGA
ACTATGAGTCATGTTCCTCTGTCTTCCGCGTCATTCGCAAAAAACGCAGT
TCCGTCTCTGATTCGGGGGAGGAAGATGATGACGAGCAGCACAATATTGA
ATTTGTCACCTTGCGTCGCCAAACGGCAGAAGTTTTACCTTGGAAAGCAC
GAAAGGGTAGTGATTACATCGACGTGACAAACGGTGCTCTGGCTGTGAAG
CCACTCGCAGCAGTTGCATCTCGGTTTGGTACTGCTTCTTTGAGTGCCAA
TCTTAGAGTTCTTGAACCGCTTCGGATGCCAGCCAGTCGAAAAGACTTTT
GCTACATCAGTCCGGAGTATCCCGATGGTACCTCTCTTCCGTACGTACCA
GTGAACAATGTAATTTTACAACACCAGCCTCGTGACTGGGTTGGAGAAGA
GTACGGCGTGAACAAAGTTCGACTATCGTTTCAAAAGCACGTATTTGAAG
AAGTTAAGTCAATTGCGATTGAGGCATACAAGGAAAAGTATCCAGGATCA
AACGTCATGTGTGATAGTACAGTAACCCCAAAACGAGCTCGGAAGATTGT
CGACCTGGACGCAGATGCCCAGGTGGACGTCTCCGTGTTCCTCGGGAGGC
CAATACGCTTAGGAATCCCTGAAGCCCTGTCTCTCATTGAGCTTGACATT
GTTGGATTAGTACTGCTGTACATTGGCGTCAATGCGAAGAATGATGACGG
CTCAGAAGCAGAGCTGGCGTTCAGAATTCATTCAATGGTCATGAAACGAG
CCGTGAGGAAGAAGCTCGACAAGTGA