Ggra4856.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4856.t1
Unique Name	Ggra4856.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	743

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:293514..295742 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008611955.1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
Evalue	3.14e-52
EggNOG OGs	KOG0581@1\|root,KOG0581@2759\|Eukaryota
Description	MAP kinase kinase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4856	Ggra4856	Gracilaria gracilis GNS1m male	gene	tig00000090_pilon 293514..295742 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4856.t1.start1	Ggra4856.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000090_pilon 293514..293516 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4856.t1.CDS1	Ggra4856.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000090_pilon 293514..295742 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4856.t1.exon1	Ggra4856.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000090_pilon 293514..295742 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4856.t1.stop1	Ggra4856.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000090_pilon 295740..295742 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4856.t1	Ggra4856.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000090_pilon 293514..295742 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000090_pilon:293514..295742+
coding sequence from alignment at tig00000090_pilon:293514..295742+

mRNA sequence

>Ggra4856.t1 ID=Ggra4856.t1|Name=Ggra4856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=743bp
MSSVDHLFRRDDDSRSFVRSSVPPSAANTLASEIQPRESPQSSAQYHSSN
GPALPRSAMHRITTSAKQRINSSLSPQGRVLLAQEKKEEAGKKLVSKAPV
QRVPNSARERVNGSSRIRINSSLSTQRRTNAPQTSKEDVQKQSLSQRSSS
AGQVLDFETAPIEERSSADAAFPLREREPAMPLGRCQSTPAKRSSSLKRR
MRLNLPLLKIPTATNNSSTSVTFKSVRSSSGERKAIKDDSIVYAGLVGQE
TPRRGTRSNITAQSAANQQPSSASGSTTSPTAFGGANQGKPSVSKPQNGV
WKAVSPRIADRTGVKVLNHLTEADQELLHPDYVEPLTSRTASTGKTNGTP
IDPNTSNSGIAEDSFILQIEDTYVDGGFVISLNGLEDTPEKLVRKVSNGL
DGDVVPTSSRNLIIVRSLDEFTRVRTIRGNGTLGRGITGSVYLATHDPTR
KFVAVKRINAFDEKKREELKKELTTLISHESRFLVRSHGAFYDGMNGVHI
VLEYMDRGSLDDVVSQYGKIPEPVLRKIIEHCLLGLRFLHENHVLHRDVK
TANILLSSKVGRAKLGDFGLARDLNERKANCNSIGEGSTSETETFVGTFA
YMSPERLRGRKYTYASDIWGLGMVVIECALGRPPFDSLHQFFEIVEAVEG
TPPVSLIEGCVSPELADFIRLSTDHNPKGRPPASELLRHPWIRAGDGDQH
VLKQWLNELPAMHHDIMNDRSGGSVRAQARQLERMRETNQLR*

spliced messenger RNA

>Ggra4856.t1 ID=Ggra4856.t1|Name=Ggra4856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00000090_pilon:293514..295742+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCGTGGATCATCTCTTCCGTCGTGACGACGATTCGCGATCCTT
CGTTCGCTCGTCCGTGCCGCCTAGCGCCGCCAACACACTCGCAAGCGAGA
TACAGCCCCGAGAGTCGCCTCAAAGCTCGGCTCAGTATCACAGCTCGAAT
GGCCCTGCGTTGCCTAGATCTGCTATGCACAGAATCACCACTTCTGCAAA
GCAGAGAATCAATAGCTCTTTATCACCACAAGGAAGAGTGCTCCTGGCGC
AAGAAAAGAAGGAAGAGGCTGGGAAAAAGCTTGTGAGCAAAGCTCCCGTG
CAGAGAGTTCCAAATTCTGCGCGGGAGAGGGTCAACGGATCCTCACGAAT
AAGGATCAACAGTTCGTTATCGACGCAAAGGAGAACAAATGCCCCACAAA
CGAGCAAGGAAGACGTTCAGAAACAAAGTCTCAGCCAACGTTCGTCATCA
GCGGGACAGGTTCTGGACTTCGAAACGGCTCCAATCGAGGAGCGTTCCTC
GGCAGACGCTGCTTTTCCCCTGCGCGAAAGAGAGCCTGCTATGCCGCTGG
GAAGGTGTCAATCCACTCCAGCAAAGCGAAGCTCATCCCTGAAGCGTCGG
ATGCGGTTAAACTTGCCGCTCCTCAAGATACCTACAGCAACGAATAATAG
CTCTACAAGCGTTACCTTCAAGAGTGTGAGAAGTTCTTCCGGAGAACGCA
AAGCTATCAAAGATGATAGCATCGTCTATGCTGGGCTCGTGGGACAAGAA
ACCCCAAGACGTGGAACCCGATCAAATATAACGGCGCAGAGTGCTGCCAA
TCAACAACCTTCATCGGCATCCGGATCAACAACATCGCCTACTGCTTTCG
GCGGCGCCAATCAAGGGAAGCCGTCAGTTTCCAAACCGCAGAACGGAGTG
TGGAAGGCTGTCTCACCTCGGATTGCTGATAGAACGGGCGTCAAAGTTTT
GAATCACCTCACAGAGGCTGACCAGGAGCTTCTTCACCCCGATTACGTTG
AGCCCCTAACCTCGCGTACAGCATCAACCGGAAAGACGAATGGTACACCA
ATCGATCCCAACACGTCAAATTCCGGGATCGCGGAAGACAGCTTCATACT
CCAGATTGAGGATACTTATGTAGATGGAGGATTCGTAATATCCTTGAACG
GTCTGGAAGACACCCCAGAGAAGCTTGTCCGAAAAGTTTCTAACGGTTTG
GACGGTGACGTGGTCCCTACTTCGAGCAGAAATCTCATTATTGTGCGAAG
CCTAGATGAATTCACTAGAGTACGTACCATTCGTGGGAACGGAACACTCG
GAAGAGGTATAACCGGCTCCGTGTATCTTGCGACCCATGACCCTACAAGA
AAGTTTGTGGCTGTGAAGAGAATAAACGCGTTTGATGAGAAGAAACGGGA
AGAGCTTAAGAAAGAGTTGACTACACTCATCAGCCATGAGAGCCGATTCT
TGGTGCGTTCACATGGAGCTTTTTATGACGGCATGAATGGCGTCCATATA
GTTCTTGAGTATATGGATCGTGGTTCCTTGGACGATGTTGTTTCCCAGTA
CGGGAAAATACCAGAACCAGTACTGCGCAAGATAATCGAGCACTGCCTTC
TTGGCCTTCGGTTCCTTCATGAGAACCATGTCTTGCATCGTGACGTCAAG
ACAGCGAATATACTATTGTCGTCCAAAGTCGGCCGTGCCAAACTCGGTGA
CTTTGGATTGGCCAGAGATCTAAACGAGAGGAAAGCCAATTGTAACAGTA
TCGGGGAGGGAAGTACTTCGGAAACGGAAACATTCGTCGGAACATTTGCC
TACATGTCGCCTGAAAGGCTCCGTGGGAGGAAATACACGTATGCGAGTGA
CATCTGGGGCCTCGGAATGGTAGTTATTGAATGTGCGCTTGGGAGACCAC
CATTTGACAGTCTTCATCAATTCTTCGAGATTGTTGAAGCTGTGGAGGGT
ACCCCACCTGTCTCCCTTATTGAAGGATGCGTTTCTCCAGAACTGGCTGA
TTTCATTCGCCTGAGTACAGATCACAATCCGAAAGGGAGACCACCGGCGT
CGGAACTCTTGAGACATCCTTGGATCAGGGCTGGGGATGGCGACCAACAT
GTTTTGAAGCAGTGGCTCAATGAGTTACCAGCCATGCACCATGATATCAT
GAATGATCGGTCTGGTGGATCTGTGAGGGCTCAGGCGCGGCAGCTAGAAA
GAATGCGCGAGACAAACCAACTCCGATGA

protein sequence of Ggra4856.t1

>Ggra4856.t1 ID=Ggra4856.t1|Name=Ggra4856.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=743bp
MSSVDHLFRRDDDSRSFVRSSVPPSAANTLASEIQPRESPQSSAQYHSSN
GPALPRSAMHRITTSAKQRINSSLSPQGRVLLAQEKKEEAGKKLVSKAPV
QRVPNSARERVNGSSRIRINSSLSTQRRTNAPQTSKEDVQKQSLSQRSSS
AGQVLDFETAPIEERSSADAAFPLREREPAMPLGRCQSTPAKRSSSLKRR
MRLNLPLLKIPTATNNSSTSVTFKSVRSSSGERKAIKDDSIVYAGLVGQE
TPRRGTRSNITAQSAANQQPSSASGSTTSPTAFGGANQGKPSVSKPQNGV
WKAVSPRIADRTGVKVLNHLTEADQELLHPDYVEPLTSRTASTGKTNGTP
IDPNTSNSGIAEDSFILQIEDTYVDGGFVISLNGLEDTPEKLVRKVSNGL
DGDVVPTSSRNLIIVRSLDEFTRVRTIRGNGTLGRGITGSVYLATHDPTR
KFVAVKRINAFDEKKREELKKELTTLISHESRFLVRSHGAFYDGMNGVHI
VLEYMDRGSLDDVVSQYGKIPEPVLRKIIEHCLLGLRFLHENHVLHRDVK
TANILLSSKVGRAKLGDFGLARDLNERKANCNSIGEGSTSETETFVGTFA
YMSPERLRGRKYTYASDIWGLGMVVIECALGRPPFDSLHQFFEIVEAVEG
TPPVSLIEGCVSPELADFIRLSTDHNPKGRPPASELLRHPWIRAGDGDQH
VLKQWLNELPAMHHDIMNDRSGGSVRAQARQLERMRETNQLR*

mRNA from alignment at tig00000090_pilon:293514..295742+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4856.t1 ID=Ggra4856.t1|Name=Ggra4856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00000090_pilon:293514..295742+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCGTGGATCATCTCTTCCGTCGTGACGACGATTCGCGATCCTT
CGTTCGCTCGTCCGTGCCGCCTAGCGCCGCCAACACACTCGCAAGCGAGA
TACAGCCCCGAGAGTCGCCTCAAAGCTCGGCTCAGTATCACAGCTCGAAT
GGCCCTGCGTTGCCTAGATCTGCTATGCACAGAATCACCACTTCTGCAAA
GCAGAGAATCAATAGCTCTTTATCACCACAAGGAAGAGTGCTCCTGGCGC
AAGAAAAGAAGGAAGAGGCTGGGAAAAAGCTTGTGAGCAAAGCTCCCGTG
CAGAGAGTTCCAAATTCTGCGCGGGAGAGGGTCAACGGATCCTCACGAAT
AAGGATCAACAGTTCGTTATCGACGCAAAGGAGAACAAATGCCCCACAAA
CGAGCAAGGAAGACGTTCAGAAACAAAGTCTCAGCCAACGTTCGTCATCA
GCGGGACAGGTTCTGGACTTCGAAACGGCTCCAATCGAGGAGCGTTCCTC
GGCAGACGCTGCTTTTCCCCTGCGCGAAAGAGAGCCTGCTATGCCGCTGG
GAAGGTGTCAATCCACTCCAGCAAAGCGAAGCTCATCCCTGAAGCGTCGG
ATGCGGTTAAACTTGCCGCTCCTCAAGATACCTACAGCAACGAATAATAG
CTCTACAAGCGTTACCTTCAAGAGTGTGAGAAGTTCTTCCGGAGAACGCA
AAGCTATCAAAGATGATAGCATCGTCTATGCTGGGCTCGTGGGACAAGAA
ACCCCAAGACGTGGAACCCGATCAAATATAACGGCGCAGAGTGCTGCCAA
TCAACAACCTTCATCGGCATCCGGATCAACAACATCGCCTACTGCTTTCG
GCGGCGCCAATCAAGGGAAGCCGTCAGTTTCCAAACCGCAGAACGGAGTG
TGGAAGGCTGTCTCACCTCGGATTGCTGATAGAACGGGCGTCAAAGTTTT
GAATCACCTCACAGAGGCTGACCAGGAGCTTCTTCACCCCGATTACGTTG
AGCCCCTAACCTCGCGTACAGCATCAACCGGAAAGACGAATGGTACACCA
ATCGATCCCAACACGTCAAATTCCGGGATCGCGGAAGACAGCTTCATACT
CCAGATTGAGGATACTTATGTAGATGGAGGATTCGTAATATCCTTGAACG
GTCTGGAAGACACCCCAGAGAAGCTTGTCCGAAAAGTTTCTAACGGTTTG
GACGGTGACGTGGTCCCTACTTCGAGCAGAAATCTCATTATTGTGCGAAG
CCTAGATGAATTCACTAGAGTACGTACCATTCGTGGGAACGGAACACTCG
GAAGAGGTATAACCGGCTCCGTGTATCTTGCGACCCATGACCCTACAAGA
AAGTTTGTGGCTGTGAAGAGAATAAACGCGTTTGATGAGAAGAAACGGGA
AGAGCTTAAGAAAGAGTTGACTACACTCATCAGCCATGAGAGCCGATTCT
TGGTGCGTTCACATGGAGCTTTTTATGACGGCATGAATGGCGTCCATATA
GTTCTTGAGTATATGGATCGTGGTTCCTTGGACGATGTTGTTTCCCAGTA
CGGGAAAATACCAGAACCAGTACTGCGCAAGATAATCGAGCACTGCCTTC
TTGGCCTTCGGTTCCTTCATGAGAACCATGTCTTGCATCGTGACGTCAAG
ACAGCGAATATACTATTGTCGTCCAAAGTCGGCCGTGCCAAACTCGGTGA
CTTTGGATTGGCCAGAGATCTAAACGAGAGGAAAGCCAATTGTAACAGTA
TCGGGGAGGGAAGTACTTCGGAAACGGAAACATTCGTCGGAACATTTGCC
TACATGTCGCCTGAAAGGCTCCGTGGGAGGAAATACACGTATGCGAGTGA
CATCTGGGGCCTCGGAATGGTAGTTATTGAATGTGCGCTTGGGAGACCAC
CATTTGACAGTCTTCATCAATTCTTCGAGATTGTTGAAGCTGTGGAGGGT
ACCCCACCTGTCTCCCTTATTGAAGGATGCGTTTCTCCAGAACTGGCTGA
TTTCATTCGCCTGAGTACAGATCACAATCCGAAAGGGAGACCACCGGCGT
CGGAACTCTTGAGACATCCTTGGATCAGGGCTGGGGATGGCGACCAACAT
GTTTTGAAGCAGTGGCTCAATGAGTTACCAGCCATGCACCATGATATCAT
GAATGATCGGTCTGGTGGATCTGTGAGGGCTCAGGCGCGGCAGCTAGAAA
GAATGCGCGAGACAAACCAACTCCGATGA

Coding sequence (CDS) from alignment at tig00000090_pilon:293514..295742+

>Ggra4856.t1 ID=Ggra4856.t1|Name=Ggra4856.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2229bp|location=Sequence derived from alignment at tig00000090_pilon:293514..295742+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCGTGGATCATCTCTTCCGTCGTGACGACGATTCGCGATCCTT
CGTTCGCTCGTCCGTGCCGCCTAGCGCCGCCAACACACTCGCAAGCGAGA
TACAGCCCCGAGAGTCGCCTCAAAGCTCGGCTCAGTATCACAGCTCGAAT
GGCCCTGCGTTGCCTAGATCTGCTATGCACAGAATCACCACTTCTGCAAA
GCAGAGAATCAATAGCTCTTTATCACCACAAGGAAGAGTGCTCCTGGCGC
AAGAAAAGAAGGAAGAGGCTGGGAAAAAGCTTGTGAGCAAAGCTCCCGTG
CAGAGAGTTCCAAATTCTGCGCGGGAGAGGGTCAACGGATCCTCACGAAT
AAGGATCAACAGTTCGTTATCGACGCAAAGGAGAACAAATGCCCCACAAA
CGAGCAAGGAAGACGTTCAGAAACAAAGTCTCAGCCAACGTTCGTCATCA
GCGGGACAGGTTCTGGACTTCGAAACGGCTCCAATCGAGGAGCGTTCCTC
GGCAGACGCTGCTTTTCCCCTGCGCGAAAGAGAGCCTGCTATGCCGCTGG
GAAGGTGTCAATCCACTCCAGCAAAGCGAAGCTCATCCCTGAAGCGTCGG
ATGCGGTTAAACTTGCCGCTCCTCAAGATACCTACAGCAACGAATAATAG
CTCTACAAGCGTTACCTTCAAGAGTGTGAGAAGTTCTTCCGGAGAACGCA
AAGCTATCAAAGATGATAGCATCGTCTATGCTGGGCTCGTGGGACAAGAA
ACCCCAAGACGTGGAACCCGATCAAATATAACGGCGCAGAGTGCTGCCAA
TCAACAACCTTCATCGGCATCCGGATCAACAACATCGCCTACTGCTTTCG
GCGGCGCCAATCAAGGGAAGCCGTCAGTTTCCAAACCGCAGAACGGAGTG
TGGAAGGCTGTCTCACCTCGGATTGCTGATAGAACGGGCGTCAAAGTTTT
GAATCACCTCACAGAGGCTGACCAGGAGCTTCTTCACCCCGATTACGTTG
AGCCCCTAACCTCGCGTACAGCATCAACCGGAAAGACGAATGGTACACCA
ATCGATCCCAACACGTCAAATTCCGGGATCGCGGAAGACAGCTTCATACT
CCAGATTGAGGATACTTATGTAGATGGAGGATTCGTAATATCCTTGAACG
GTCTGGAAGACACCCCAGAGAAGCTTGTCCGAAAAGTTTCTAACGGTTTG
GACGGTGACGTGGTCCCTACTTCGAGCAGAAATCTCATTATTGTGCGAAG
CCTAGATGAATTCACTAGAGTACGTACCATTCGTGGGAACGGAACACTCG
GAAGAGGTATAACCGGCTCCGTGTATCTTGCGACCCATGACCCTACAAGA
AAGTTTGTGGCTGTGAAGAGAATAAACGCGTTTGATGAGAAGAAACGGGA
AGAGCTTAAGAAAGAGTTGACTACACTCATCAGCCATGAGAGCCGATTCT
TGGTGCGTTCACATGGAGCTTTTTATGACGGCATGAATGGCGTCCATATA
GTTCTTGAGTATATGGATCGTGGTTCCTTGGACGATGTTGTTTCCCAGTA
CGGGAAAATACCAGAACCAGTACTGCGCAAGATAATCGAGCACTGCCTTC
TTGGCCTTCGGTTCCTTCATGAGAACCATGTCTTGCATCGTGACGTCAAG
ACAGCGAATATACTATTGTCGTCCAAAGTCGGCCGTGCCAAACTCGGTGA
CTTTGGATTGGCCAGAGATCTAAACGAGAGGAAAGCCAATTGTAACAGTA
TCGGGGAGGGAAGTACTTCGGAAACGGAAACATTCGTCGGAACATTTGCC
TACATGTCGCCTGAAAGGCTCCGTGGGAGGAAATACACGTATGCGAGTGA
CATCTGGGGCCTCGGAATGGTAGTTATTGAATGTGCGCTTGGGAGACCAC
CATTTGACAGTCTTCATCAATTCTTCGAGATTGTTGAAGCTGTGGAGGGT
ACCCCACCTGTCTCCCTTATTGAAGGATGCGTTTCTCCAGAACTGGCTGA
TTTCATTCGCCTGAGTACAGATCACAATCCGAAAGGGAGACCACCGGCGT
CGGAACTCTTGAGACATCCTTGGATCAGGGCTGGGGATGGCGACCAACAT
GTTTTGAAGCAGTGGCTCAATGAGTTACCAGCCATGCACCATGATATCAT
GAATGATCGGTCTGGTGGATCTGTGAGGGCTCAGGCGCGGCAGCTAGAAA
GAATGCGCGAGACAAACCAACTCCGATGA