Ggra4854.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4854.t1
Unique NameGgra4854.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:290231..291129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4854Ggra4854Gracilaria gracilis GNS1m malegenetig00000090_pilon 290231..291129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4854.t1Ggra4854.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 290231..291129 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4854.t1.start1Ggra4854.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 290231..290233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4854.t1.CDS1Ggra4854.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 290231..290352 +
Ggra4854.t1.CDS2Ggra4854.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000090_pilon 290418..291129 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4854.t1.exon1Ggra4854.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 290231..290352 +
Ggra4854.t1.exon2Ggra4854.t1.exon2Gracilaria gracilis GNS1m maleexontig00000090_pilon 290418..291129 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4854.t1.intron1Ggra4854.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000090_pilon 290353..290417 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4854.t1.stop1Ggra4854.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 291127..291129 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4854.t1 ID=Ggra4854.t1|Name=Ggra4854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MAEFEHDGSALAAVRAFLAQHHDSSSEDEEPPEKYIPRPARLGVGANPNQ
AVHGGSTHGLSEVNRRLGHALRRQAQAAENNDEDNVQSSDDDEVESRARA
LGKRNKLDQKTDAKHAVEESRSRGKNSKNEQTTGVKGKDKEDSDSDDEWG
DDILRRMTEEQDAQFQRWSKGFVSVEDGAANSNGNANNLGNGEKRHDADG
MFRRKRKKRRSRQKNLKRDKRKRNELPAHLTEETLKAGRVRKSVDGKAEF
HPSRTGARSKKARSLATNGTAVPMGSG*
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spliced messenger RNA

>Ggra4854.t1 ID=Ggra4854.t1|Name=Ggra4854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000090_pilon:290231..291129+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGTTTGAACATGATGGAAGTGCACTTGCGGCAGTCAGAGCGTT
TCTGGCTCAACATCACGACAGTTCGTCCGAAGATGAGGAGCCTCCTGAGA
AGTATATCCCCCGACCTGCTCGACTAGGAGTTGGAGCAAACCCTAATCAG
GCAGTGCATGGTGGGAGCACGCATGGGCTTAGTGAGGTGAACAGGAGGCT
AGGACACGCGTTACGACGGCAAGCTCAGGCGGCTGAAAATAATGATGAGG
ACAATGTCCAAAGCAGTGATGATGACGAAGTAGAGTCCAGGGCGCGGGCT
CTTGGCAAAAGGAATAAACTGGATCAGAAGACTGATGCAAAACACGCAGT
TGAGGAGTCTCGTTCTCGTGGAAAGAACAGCAAAAACGAGCAAACTACAG
GTGTAAAAGGAAAGGATAAGGAAGACTCGGACAGTGATGATGAATGGGGA
GACGACATTCTACGGCGTATGACTGAAGAACAAGACGCACAATTCCAGCG
CTGGTCCAAGGGCTTCGTGTCCGTAGAGGACGGAGCTGCGAACTCAAACG
GAAACGCAAACAATCTCGGCAATGGCGAAAAGAGACATGACGCAGACGGA
ATGTTCAGGCGCAAGAGAAAGAAGAGAAGAAGCAGGCAGAAGAACTTGAA
GCGAGACAAGAGAAAACGAAATGAACTACCAGCGCATCTTACTGAAGAAA
CTCTCAAAGCTGGACGAGTGCGCAAGTCTGTAGACGGCAAAGCAGAGTTT
CATCCGTCTCGCACCGGAGCCCGTTCGAAGAAAGCGCGTTCGTTGGCAAC
AAATGGAACTGCGGTGCCGATGGGATCTGGTTGA
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protein sequence of Ggra4854.t1

>Ggra4854.t1 ID=Ggra4854.t1|Name=Ggra4854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MAEFEHDGSALAAVRAFLAQHHDSSSEDEEPPEKYIPRPARLGVGANPNQ
AVHGGSTHGLSEVNRRLGHALRRQAQAAENNDEDNVQSSDDDEVESRARA
LGKRNKLDQKTDAKHAVEESRSRGKNSKNEQTTGVKGKDKEDSDSDDEWG
DDILRRMTEEQDAQFQRWSKGFVSVEDGAANSNGNANNLGNGEKRHDADG
MFRRKRKKRRSRQKNLKRDKRKRNELPAHLTEETLKAGRVRKSVDGKAEF
HPSRTGARSKKARSLATNGTAVPMGSG*
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mRNA from alignment at tig00000090_pilon:290231..291129+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4854.t1 ID=Ggra4854.t1|Name=Ggra4854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=899bp|location=Sequence derived from alignment at tig00000090_pilon:290231..291129+ (Gracilaria gracilis GNS1m male)
ATGGCAGAGTTTGAACATGATGGAAGTGCACTTGCGGCAGTCAGAGCGTT
TCTGGCTCAACATCACGACAGTTCGTCCGAAGATGAGGAGCCTCCTGAGA
AGTATATCCCCCGACCTGCTCGGTAAGTTTCACAATTGTTGGTCTTGCTT
GAAACTTGTTCTTACTAACTTGATTCGTTCTTGACAGACTAGGAGTTGGA
GCAAACCCTAATCAGGCAGTGCATGGTGGGAGCACGCATGGGCTTAGTGA
GGTGAACAGGAGGCTAGGACACGCGTTACGACGGCAAGCTCAGGCGGCTG
AAAATAATGATGAGGACAATGTCCAAAGCAGTGATGATGACGAAGTAGAG
TCCAGGGCGCGGGCTCTTGGCAAAAGGAATAAACTGGATCAGAAGACTGA
TGCAAAACACGCAGTTGAGGAGTCTCGTTCTCGTGGAAAGAACAGCAAAA
ACGAGCAAACTACAGGTGTAAAAGGAAAGGATAAGGAAGACTCGGACAGT
GATGATGAATGGGGAGACGACATTCTACGGCGTATGACTGAAGAACAAGA
CGCACAATTCCAGCGCTGGTCCAAGGGCTTCGTGTCCGTAGAGGACGGAG
CTGCGAACTCAAACGGAAACGCAAACAATCTCGGCAATGGCGAAAAGAGA
CATGACGCAGACGGAATGTTCAGGCGCAAGAGAAAGAAGAGAAGAAGCAG
GCAGAAGAACTTGAAGCGAGACAAGAGAAAACGAAATGAACTACCAGCGC
ATCTTACTGAAGAAACTCTCAAAGCTGGACGAGTGCGCAAGTCTGTAGAC
GGCAAAGCAGAGTTTCATCCGTCTCGCACCGGAGCCCGTTCGAAGAAAGC
GCGTTCGTTGGCAACAAATGGAACTGCGGTGCCGATGGGATCTGGTTGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:290231..291129+

>Ggra4854.t1 ID=Ggra4854.t1|Name=Ggra4854.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000090_pilon:290231..291129+ (Gracilaria gracilis GNS1m male)
ATGGCAGAGTTTGAACATGATGGAAGTGCACTTGCGGCAGTCAGAGCGTT
TCTGGCTCAACATCACGACAGTTCGTCCGAAGATGAGGAGCCTCCTGAGA
AGTATATCCCCCGACCTGCTCGACTAGGAGTTGGAGCAAACCCTAATCAG
GCAGTGCATGGTGGGAGCACGCATGGGCTTAGTGAGGTGAACAGGAGGCT
AGGACACGCGTTACGACGGCAAGCTCAGGCGGCTGAAAATAATGATGAGG
ACAATGTCCAAAGCAGTGATGATGACGAAGTAGAGTCCAGGGCGCGGGCT
CTTGGCAAAAGGAATAAACTGGATCAGAAGACTGATGCAAAACACGCAGT
TGAGGAGTCTCGTTCTCGTGGAAAGAACAGCAAAAACGAGCAAACTACAG
GTGTAAAAGGAAAGGATAAGGAAGACTCGGACAGTGATGATGAATGGGGA
GACGACATTCTACGGCGTATGACTGAAGAACAAGACGCACAATTCCAGCG
CTGGTCCAAGGGCTTCGTGTCCGTAGAGGACGGAGCTGCGAACTCAAACG
GAAACGCAAACAATCTCGGCAATGGCGAAAAGAGACATGACGCAGACGGA
ATGTTCAGGCGCAAGAGAAAGAAGAGAAGAAGCAGGCAGAAGAACTTGAA
GCGAGACAAGAGAAAACGAAATGAACTACCAGCGCATCTTACTGAAGAAA
CTCTCAAAGCTGGACGAGTGCGCAAGTCTGTAGACGGCAAAGCAGAGTTT
CATCCGTCTCGCACCGGAGCCCGTTCGAAGAAAGCGCGTTCGTTGGCAAC
AAATGGAACTGCGGTGCCGATGGGATCTGGTTGA
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