Ggra4833.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4833.t1
Unique NameGgra4833.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:242091..242975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog221360.RS9917_05115
PFAMsTPR_1,TPR_11,TPR_16,TPR_2,TPR_6
Max annot lvl1117|Cyanobacteria
Evalue3.57e-37
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G0IA@1117|Cyanobacteria,1GYVU@1129|Synechococcus
DescriptionCOG0457 FOG TPR repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4833Ggra4833Gracilaria gracilis GNS1m malegenetig00000090_pilon 242091..242975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4833.t1.start1Ggra4833.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 242091..242093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4833.t1.CDS1Ggra4833.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 242091..242975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4833.t1.exon1Ggra4833.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 242091..242975 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4833.t1.stop1Ggra4833.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 242973..242975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4833.t1Ggra4833.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 242091..242975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4833.t1 ID=Ggra4833.t1|Name=Ggra4833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MNTTESTMKAQTSVSRRSVLIAAATQLILAPLAAAQAATPNAKQNASAVE
EFRKVTALQDLAFEYTNQLRFSDAEILWTKLISLNENNAAAYSNRGNCRT
SQGKLDQAIDDFNRAISLAPEEPDCYLGLGVALEGLRKYEDALQAFQTSN
ELSEKRFGKADAVALNNIGNAYGGLGNWKQACAYYKRAALTDSKFVFALA
NQALAELQLGMDEDAVQTMRFLTLKYPRFGDMHAAMAMVLWERGDGALAE
DEWYKAVQSDGRYADVKWVSEVRRWPPRLVAILTRFRGLRKPSP*
back to top

spliced messenger RNA

>Ggra4833.t1 ID=Ggra4833.t1|Name=Ggra4833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000090_pilon:242091..242975+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACTACGGAAAGCACGATGAAAGCGCAAACAAGTGTCAGTCGAAG
AAGCGTTCTGATTGCTGCGGCGACTCAACTGATACTAGCACCACTGGCGG
CCGCACAAGCCGCGACCCCAAACGCGAAGCAGAACGCAAGCGCGGTGGAA
GAGTTTCGAAAGGTGACGGCGTTACAAGACTTGGCGTTCGAGTATACCAA
TCAACTGCGCTTTTCAGACGCGGAGATACTGTGGACCAAGCTAATATCTC
TCAACGAGAACAACGCGGCAGCGTACAGTAATCGCGGCAACTGCCGAACG
TCGCAAGGAAAGCTGGACCAAGCCATTGACGATTTCAATCGCGCTATCAG
TCTTGCCCCAGAGGAACCGGACTGTTATCTAGGGCTAGGCGTGGCGTTAG
AAGGGCTACGAAAGTACGAAGACGCTTTACAAGCTTTTCAAACAAGCAAC
GAACTGTCGGAGAAACGGTTCGGCAAAGCGGACGCCGTGGCGCTGAACAA
TATCGGAAACGCTTACGGCGGACTGGGAAATTGGAAACAGGCATGTGCGT
ATTACAAACGCGCGGCGCTGACCGATAGCAAGTTCGTGTTCGCGCTGGCA
AACCAGGCGTTGGCCGAATTGCAACTGGGCATGGACGAGGACGCGGTGCA
GACGATGCGCTTTCTTACACTGAAGTACCCGCGCTTTGGCGACATGCACG
CCGCGATGGCGATGGTGCTGTGGGAACGCGGCGACGGCGCGCTGGCGGAG
GACGAATGGTACAAGGCGGTCCAGAGCGACGGCAGGTACGCAGATGTGAA
GTGGGTGAGCGAGGTCAGGAGATGGCCGCCGCGACTGGTGGCGATCCTGA
CGCGCTTCCGTGGGCTGCGCAAGCCGTCGCCATGA
back to top

protein sequence of Ggra4833.t1

>Ggra4833.t1 ID=Ggra4833.t1|Name=Ggra4833.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MNTTESTMKAQTSVSRRSVLIAAATQLILAPLAAAQAATPNAKQNASAVE
EFRKVTALQDLAFEYTNQLRFSDAEILWTKLISLNENNAAAYSNRGNCRT
SQGKLDQAIDDFNRAISLAPEEPDCYLGLGVALEGLRKYEDALQAFQTSN
ELSEKRFGKADAVALNNIGNAYGGLGNWKQACAYYKRAALTDSKFVFALA
NQALAELQLGMDEDAVQTMRFLTLKYPRFGDMHAAMAMVLWERGDGALAE
DEWYKAVQSDGRYADVKWVSEVRRWPPRLVAILTRFRGLRKPSP*
back to top

mRNA from alignment at tig00000090_pilon:242091..242975+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4833.t1 ID=Ggra4833.t1|Name=Ggra4833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000090_pilon:242091..242975+ (Gracilaria gracilis GNS1m male)
ATGAACACTACGGAAAGCACGATGAAAGCGCAAACAAGTGTCAGTCGAAG
AAGCGTTCTGATTGCTGCGGCGACTCAACTGATACTAGCACCACTGGCGG
CCGCACAAGCCGCGACCCCAAACGCGAAGCAGAACGCAAGCGCGGTGGAA
GAGTTTCGAAAGGTGACGGCGTTACAAGACTTGGCGTTCGAGTATACCAA
TCAACTGCGCTTTTCAGACGCGGAGATACTGTGGACCAAGCTAATATCTC
TCAACGAGAACAACGCGGCAGCGTACAGTAATCGCGGCAACTGCCGAACG
TCGCAAGGAAAGCTGGACCAAGCCATTGACGATTTCAATCGCGCTATCAG
TCTTGCCCCAGAGGAACCGGACTGTTATCTAGGGCTAGGCGTGGCGTTAG
AAGGGCTACGAAAGTACGAAGACGCTTTACAAGCTTTTCAAACAAGCAAC
GAACTGTCGGAGAAACGGTTCGGCAAAGCGGACGCCGTGGCGCTGAACAA
TATCGGAAACGCTTACGGCGGACTGGGAAATTGGAAACAGGCATGTGCGT
ATTACAAACGCGCGGCGCTGACCGATAGCAAGTTCGTGTTCGCGCTGGCA
AACCAGGCGTTGGCCGAATTGCAACTGGGCATGGACGAGGACGCGGTGCA
GACGATGCGCTTTCTTACACTGAAGTACCCGCGCTTTGGCGACATGCACG
CCGCGATGGCGATGGTGCTGTGGGAACGCGGCGACGGCGCGCTGGCGGAG
GACGAATGGTACAAGGCGGTCCAGAGCGACGGCAGGTACGCAGATGTGAA
GTGGGTGAGCGAGGTCAGGAGATGGCCGCCGCGACTGGTGGCGATCCTGA
CGCGCTTCCGTGGGCTGCGCAAGCCGTCGCCATGA
back to top

Coding sequence (CDS) from alignment at tig00000090_pilon:242091..242975+

>Ggra4833.t1 ID=Ggra4833.t1|Name=Ggra4833.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000090_pilon:242091..242975+ (Gracilaria gracilis GNS1m male)
ATGAACACTACGGAAAGCACGATGAAAGCGCAAACAAGTGTCAGTCGAAG
AAGCGTTCTGATTGCTGCGGCGACTCAACTGATACTAGCACCACTGGCGG
CCGCACAAGCCGCGACCCCAAACGCGAAGCAGAACGCAAGCGCGGTGGAA
GAGTTTCGAAAGGTGACGGCGTTACAAGACTTGGCGTTCGAGTATACCAA
TCAACTGCGCTTTTCAGACGCGGAGATACTGTGGACCAAGCTAATATCTC
TCAACGAGAACAACGCGGCAGCGTACAGTAATCGCGGCAACTGCCGAACG
TCGCAAGGAAAGCTGGACCAAGCCATTGACGATTTCAATCGCGCTATCAG
TCTTGCCCCAGAGGAACCGGACTGTTATCTAGGGCTAGGCGTGGCGTTAG
AAGGGCTACGAAAGTACGAAGACGCTTTACAAGCTTTTCAAACAAGCAAC
GAACTGTCGGAGAAACGGTTCGGCAAAGCGGACGCCGTGGCGCTGAACAA
TATCGGAAACGCTTACGGCGGACTGGGAAATTGGAAACAGGCATGTGCGT
ATTACAAACGCGCGGCGCTGACCGATAGCAAGTTCGTGTTCGCGCTGGCA
AACCAGGCGTTGGCCGAATTGCAACTGGGCATGGACGAGGACGCGGTGCA
GACGATGCGCTTTCTTACACTGAAGTACCCGCGCTTTGGCGACATGCACG
CCGCGATGGCGATGGTGCTGTGGGAACGCGGCGACGGCGCGCTGGCGGAG
GACGAATGGTACAAGGCGGTCCAGAGCGACGGCAGGTACGCAGATGTGAA
GTGGGTGAGCGAGGTCAGGAGATGGCCGCCGCGACTGGTGGCGATCCTGA
CGCGCTTCCGTGGGCTGCGCAAGCCGTCGCCATGA
back to top