Ggra4825.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4825.t1
Unique NameGgra4825.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:222990..224474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708821.1
Preferred nameSLC37A4
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K08171,ko:K13783,ko:K14004,ko:K15108
KEGG TC2.A.1.4,2.A.1.4.5,2.A.29.16,2.A.29.28
KEGG Pathwayko03013,ko04141,ko04150,ko04973,map03013,map04141,map04150,map04973
KEGG ModuleM00404,M00427
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0009058,GO:0012505,GO:0015075,GO:0015103,GO:0015114,GO:0015119,GO:0015152,GO:0015291,GO:0015297,GO:0015301,GO:0015315,GO:0015318,GO:0015526,GO:0015605,GO:0015698,GO:0015711,GO:0015712,GO:0015748,GO:0015760,GO:0016020,GO:0016021,GO:0016051,GO:0019318,GO:0019319,GO:0022804,GO:0022857,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033500,GO:0034220,GO:0035435,GO:0042175,GO:0042592,GO:0042593,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0048878,GO:0051179,GO:0051234,GO:0055085,GO:0061513,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0098656,GO:0098660,GO:0098661,GO:0098827,GO:0099516,GO:1901264,GO:1901505,GO:1901576
Evalue3.32e-104
EggNOG OGsCOG0477@1|root,KOG2533@2759|Eukaryota
Descriptiontransmembrane transport
COG categoryEGP
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4825Ggra4825Gracilaria gracilis GNS1m malegenetig00000090_pilon 222990..224474 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4825.t1.start1Ggra4825.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 222990..222992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4825.t1.CDS1Ggra4825.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 222990..224474 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4825.t1.exon1Ggra4825.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 222990..224474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4825.t1.stop1Ggra4825.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 224472..224474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4825.t1Ggra4825.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 222990..224474 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4825.t1 ID=Ggra4825.t1|Name=Ggra4825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp
MFESDIKWMAFVPTWIGGQRLRGAKPDADKRRSRRWIEAPRRSTRLIVLC
KSSAEGNTGSSLEPTSNVDTFSEGQFKFKIARGAVFSAMALTYATYVMLR
ATFTYIAPVMATSLNLTLQSIGEITSAFPIAYGLSRLFTGVVVDRAAPHV
ALATGLFLAGLVNVAMGSVTTVSLLAFLWGLNGLVQGVGAGSSAKMLLNW
FSPEERGFFWALWSTSANVGGFLAPVVCGWLASTKAGFRAGMVAPGVFAM
VLALITVMLTRSSPRQMGFLTRWEPKAVEKKGREEQTESVPWKQAFMEGV
LKNRMIWTLAISYFFVYFVRAGMKSWLQFWLLDSHTFSATEAAYRVSGVE
VGGIIGTFSAGVVSDWANGRRAAVTIVYLLGLVVSLAVTWLTGGRNALWD
FVAMAVMGFMINGPQMMIGLIGAEVADKRVVGTANGMLGLISYLGAAASG
MPLAFVIQKFKWSGFFCSLLFCSLMSALCLTPLWKLRAQDAKNG*
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spliced messenger RNA

>Ggra4825.t1 ID=Ggra4825.t1|Name=Ggra4825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000090_pilon:222990..224474+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAATCGGACATAAAATGGATGGCGTTCGTTCCAACTTGGATCGG
GGGTCAGCGGCTTAGAGGGGCCAAGCCAGATGCGGATAAGCGTAGATCTC
GGCGATGGATTGAAGCACCAAGAAGGTCTACTCGTCTCATAGTGTTGTGC
AAATCTTCAGCTGAAGGAAACACGGGAAGCTCACTGGAACCAACTTCAAA
TGTTGACACCTTTTCAGAAGGTCAGTTCAAATTCAAAATTGCTCGGGGTG
CGGTCTTTTCTGCGATGGCCTTGACCTATGCCACATATGTTATGTTACGA
GCGACTTTCACATACATCGCCCCTGTTATGGCGACATCCCTCAATCTCAC
CCTGCAGAGCATTGGTGAGATAACATCTGCCTTTCCCATAGCATATGGTT
TGTCGCGTTTGTTCACCGGGGTTGTAGTTGACCGTGCTGCACCTCATGTT
GCGCTCGCAACTGGTCTCTTTCTTGCAGGTCTAGTTAATGTCGCTATGGG
GTCTGTAACTACAGTTTCCCTGCTCGCCTTTCTATGGGGATTGAATGGGC
TGGTTCAGGGTGTTGGTGCAGGATCTTCGGCAAAAATGTTATTGAATTGG
TTCAGCCCAGAAGAAAGAGGATTCTTTTGGGCTTTGTGGAGTACGAGTGC
TAACGTCGGCGGGTTTTTGGCACCTGTTGTTTGCGGATGGCTTGCATCGA
CGAAGGCTGGGTTTCGCGCTGGAATGGTTGCCCCTGGTGTTTTTGCGATG
GTGTTAGCGCTCATCACAGTCATGTTAACGAGGTCGTCACCGCGTCAGAT
GGGGTTCTTAACCCGATGGGAACCGAAAGCAGTCGAAAAGAAAGGCAGAG
AGGAGCAAACAGAGAGTGTACCTTGGAAGCAAGCGTTTATGGAAGGGGTT
CTAAAGAATCGAATGATTTGGACCTTAGCCATTTCGTACTTCTTTGTATA
CTTCGTTCGAGCCGGTATGAAGAGCTGGTTGCAATTCTGGTTACTTGACT
CTCATACGTTCTCTGCCACGGAAGCTGCCTATCGTGTCTCCGGAGTAGAG
GTAGGAGGTATCATAGGAACGTTTTCCGCCGGAGTTGTCTCAGACTGGGC
GAATGGGCGACGAGCGGCGGTGACAATCGTATACCTTTTAGGTCTGGTTG
TGAGCTTGGCCGTAACGTGGTTAACTGGCGGTCGGAATGCGCTGTGGGAT
TTTGTAGCAATGGCTGTTATGGGTTTCATGATTAACGGGCCTCAGATGAT
GATTGGACTCATAGGTGCAGAGGTCGCAGATAAGCGAGTGGTTGGAACTG
CAAACGGCATGCTTGGCTTGATTAGCTATCTTGGAGCTGCCGCTTCGGGC
ATGCCATTGGCGTTTGTAATCCAGAAGTTTAAGTGGTCCGGGTTCTTTTG
TTCTCTGCTCTTCTGCTCCTTGATGTCGGCGCTGTGCTTAACACCTCTCT
GGAAGCTCAGGGCGCAAGATGCGAAAAATGGATGA
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protein sequence of Ggra4825.t1

>Ggra4825.t1 ID=Ggra4825.t1|Name=Ggra4825.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=495bp
MFESDIKWMAFVPTWIGGQRLRGAKPDADKRRSRRWIEAPRRSTRLIVLC
KSSAEGNTGSSLEPTSNVDTFSEGQFKFKIARGAVFSAMALTYATYVMLR
ATFTYIAPVMATSLNLTLQSIGEITSAFPIAYGLSRLFTGVVVDRAAPHV
ALATGLFLAGLVNVAMGSVTTVSLLAFLWGLNGLVQGVGAGSSAKMLLNW
FSPEERGFFWALWSTSANVGGFLAPVVCGWLASTKAGFRAGMVAPGVFAM
VLALITVMLTRSSPRQMGFLTRWEPKAVEKKGREEQTESVPWKQAFMEGV
LKNRMIWTLAISYFFVYFVRAGMKSWLQFWLLDSHTFSATEAAYRVSGVE
VGGIIGTFSAGVVSDWANGRRAAVTIVYLLGLVVSLAVTWLTGGRNALWD
FVAMAVMGFMINGPQMMIGLIGAEVADKRVVGTANGMLGLISYLGAAASG
MPLAFVIQKFKWSGFFCSLLFCSLMSALCLTPLWKLRAQDAKNG*
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mRNA from alignment at tig00000090_pilon:222990..224474+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4825.t1 ID=Ggra4825.t1|Name=Ggra4825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000090_pilon:222990..224474+ (Gracilaria gracilis GNS1m male)
ATGTTTGAATCGGACATAAAATGGATGGCGTTCGTTCCAACTTGGATCGG
GGGTCAGCGGCTTAGAGGGGCCAAGCCAGATGCGGATAAGCGTAGATCTC
GGCGATGGATTGAAGCACCAAGAAGGTCTACTCGTCTCATAGTGTTGTGC
AAATCTTCAGCTGAAGGAAACACGGGAAGCTCACTGGAACCAACTTCAAA
TGTTGACACCTTTTCAGAAGGTCAGTTCAAATTCAAAATTGCTCGGGGTG
CGGTCTTTTCTGCGATGGCCTTGACCTATGCCACATATGTTATGTTACGA
GCGACTTTCACATACATCGCCCCTGTTATGGCGACATCCCTCAATCTCAC
CCTGCAGAGCATTGGTGAGATAACATCTGCCTTTCCCATAGCATATGGTT
TGTCGCGTTTGTTCACCGGGGTTGTAGTTGACCGTGCTGCACCTCATGTT
GCGCTCGCAACTGGTCTCTTTCTTGCAGGTCTAGTTAATGTCGCTATGGG
GTCTGTAACTACAGTTTCCCTGCTCGCCTTTCTATGGGGATTGAATGGGC
TGGTTCAGGGTGTTGGTGCAGGATCTTCGGCAAAAATGTTATTGAATTGG
TTCAGCCCAGAAGAAAGAGGATTCTTTTGGGCTTTGTGGAGTACGAGTGC
TAACGTCGGCGGGTTTTTGGCACCTGTTGTTTGCGGATGGCTTGCATCGA
CGAAGGCTGGGTTTCGCGCTGGAATGGTTGCCCCTGGTGTTTTTGCGATG
GTGTTAGCGCTCATCACAGTCATGTTAACGAGGTCGTCACCGCGTCAGAT
GGGGTTCTTAACCCGATGGGAACCGAAAGCAGTCGAAAAGAAAGGCAGAG
AGGAGCAAACAGAGAGTGTACCTTGGAAGCAAGCGTTTATGGAAGGGGTT
CTAAAGAATCGAATGATTTGGACCTTAGCCATTTCGTACTTCTTTGTATA
CTTCGTTCGAGCCGGTATGAAGAGCTGGTTGCAATTCTGGTTACTTGACT
CTCATACGTTCTCTGCCACGGAAGCTGCCTATCGTGTCTCCGGAGTAGAG
GTAGGAGGTATCATAGGAACGTTTTCCGCCGGAGTTGTCTCAGACTGGGC
GAATGGGCGACGAGCGGCGGTGACAATCGTATACCTTTTAGGTCTGGTTG
TGAGCTTGGCCGTAACGTGGTTAACTGGCGGTCGGAATGCGCTGTGGGAT
TTTGTAGCAATGGCTGTTATGGGTTTCATGATTAACGGGCCTCAGATGAT
GATTGGACTCATAGGTGCAGAGGTCGCAGATAAGCGAGTGGTTGGAACTG
CAAACGGCATGCTTGGCTTGATTAGCTATCTTGGAGCTGCCGCTTCGGGC
ATGCCATTGGCGTTTGTAATCCAGAAGTTTAAGTGGTCCGGGTTCTTTTG
TTCTCTGCTCTTCTGCTCCTTGATGTCGGCGCTGTGCTTAACACCTCTCT
GGAAGCTCAGGGCGCAAGATGCGAAAAATGGATGA
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Coding sequence (CDS) from alignment at tig00000090_pilon:222990..224474+

>Ggra4825.t1 ID=Ggra4825.t1|Name=Ggra4825.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000090_pilon:222990..224474+ (Gracilaria gracilis GNS1m male)
ATGTTTGAATCGGACATAAAATGGATGGCGTTCGTTCCAACTTGGATCGG
GGGTCAGCGGCTTAGAGGGGCCAAGCCAGATGCGGATAAGCGTAGATCTC
GGCGATGGATTGAAGCACCAAGAAGGTCTACTCGTCTCATAGTGTTGTGC
AAATCTTCAGCTGAAGGAAACACGGGAAGCTCACTGGAACCAACTTCAAA
TGTTGACACCTTTTCAGAAGGTCAGTTCAAATTCAAAATTGCTCGGGGTG
CGGTCTTTTCTGCGATGGCCTTGACCTATGCCACATATGTTATGTTACGA
GCGACTTTCACATACATCGCCCCTGTTATGGCGACATCCCTCAATCTCAC
CCTGCAGAGCATTGGTGAGATAACATCTGCCTTTCCCATAGCATATGGTT
TGTCGCGTTTGTTCACCGGGGTTGTAGTTGACCGTGCTGCACCTCATGTT
GCGCTCGCAACTGGTCTCTTTCTTGCAGGTCTAGTTAATGTCGCTATGGG
GTCTGTAACTACAGTTTCCCTGCTCGCCTTTCTATGGGGATTGAATGGGC
TGGTTCAGGGTGTTGGTGCAGGATCTTCGGCAAAAATGTTATTGAATTGG
TTCAGCCCAGAAGAAAGAGGATTCTTTTGGGCTTTGTGGAGTACGAGTGC
TAACGTCGGCGGGTTTTTGGCACCTGTTGTTTGCGGATGGCTTGCATCGA
CGAAGGCTGGGTTTCGCGCTGGAATGGTTGCCCCTGGTGTTTTTGCGATG
GTGTTAGCGCTCATCACAGTCATGTTAACGAGGTCGTCACCGCGTCAGAT
GGGGTTCTTAACCCGATGGGAACCGAAAGCAGTCGAAAAGAAAGGCAGAG
AGGAGCAAACAGAGAGTGTACCTTGGAAGCAAGCGTTTATGGAAGGGGTT
CTAAAGAATCGAATGATTTGGACCTTAGCCATTTCGTACTTCTTTGTATA
CTTCGTTCGAGCCGGTATGAAGAGCTGGTTGCAATTCTGGTTACTTGACT
CTCATACGTTCTCTGCCACGGAAGCTGCCTATCGTGTCTCCGGAGTAGAG
GTAGGAGGTATCATAGGAACGTTTTCCGCCGGAGTTGTCTCAGACTGGGC
GAATGGGCGACGAGCGGCGGTGACAATCGTATACCTTTTAGGTCTGGTTG
TGAGCTTGGCCGTAACGTGGTTAACTGGCGGTCGGAATGCGCTGTGGGAT
TTTGTAGCAATGGCTGTTATGGGTTTCATGATTAACGGGCCTCAGATGAT
GATTGGACTCATAGGTGCAGAGGTCGCAGATAAGCGAGTGGTTGGAACTG
CAAACGGCATGCTTGGCTTGATTAGCTATCTTGGAGCTGCCGCTTCGGGC
ATGCCATTGGCGTTTGTAATCCAGAAGTTTAAGTGGTCCGGGTTCTTTTG
TTCTCTGCTCTTCTGCTCCTTGATGTCGGCGCTGTGCTTAACACCTCTCT
GGAAGCTCAGGGCGCAAGATGCGAAAAATGGATGA
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