Ggra4823.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4823.t1
Unique Name	Ggra4823.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	672

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000090_pilon	contig	tig00000090_pilon:214221..216236 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.67e-25
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4823	Ggra4823	Gracilaria gracilis GNS1m male	gene	tig00000090_pilon 214221..216236 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4823.t1.stop1	Ggra4823.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000090_pilon 214221..214223 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4823.t1.CDS1	Ggra4823.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000090_pilon 214221..216236 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4823.t1.exon1	Ggra4823.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000090_pilon 214221..216236 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4823.t1.start1	Ggra4823.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000090_pilon 216234..216236 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4823.t1	Ggra4823.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000090_pilon 214221..216236 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000090_pilon:214221..216236-
coding sequence from alignment at tig00000090_pilon:214221..216236-

mRNA sequence

>Ggra4823.t1 ID=Ggra4823.t1|Name=Ggra4823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp
MRIRDSYFLKDGPVVQFTSLKVSRLQQCFNRAKRGLREGTSPIVIVISLL
IFAFLLGAESSLHQRTLPSASAGYAFLAREKDCSAVYRQLHRFHSVPSRY
LRLMTTEQHHDLLQMISAAASNSVLTTPSRRALFVHITRCKLHPCLRAIA
SAITYARVTHRVAVIFVDIIDGISIPHLLEISPNGALLDEAILILLKAPM
MDFHGDNQTVVTDWAEFTVVHAVAPNSLTDVNTSTESTDVFDSRAPAQDY
FETLPRIGNTEDVATLDSLAALDTHVSLTLSEVVWSRYAPRTLQEGLFEN
QLRPIQGVPPHVISRASILGRHPATRKIQRTDSKLHAEYNIPEMLWNGMG
ELERKLLLLKLESKRRRGVKNPKIIFVHTQYGLGNRLRALGSAMAFARRT
GRVLVLIWVPDQHLNCRFTDLFVASDEFVVSSSFSPGEEWPFALNRKKDR
KMKDVKWYNFMRVNGVKVTSSAQPVLDDRERHIYVSTCYVIQSPVTPFII
RTTSSYWQVLRTLSPHVDVVRLVERFASYPLSSMIGIHIRGKNIKTDISG
INATDYSEESSRTTDYWRNLTKMDTFVEEMRKQTADQLFYVAADQKEVFA
KLEHEFPSRIFYTPRHCDSRDRDCLPFALADILLLAKCSSLRGSYWSSFS
ELSTRIGGARFLLAGIDFGRP*

spliced messenger RNA

>Ggra4823.t1 ID=Ggra4823.t1|Name=Ggra4823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000090_pilon:214221..216236- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTATTAGGGACTCTTACTTCTTGAAAGATGGGCCGGTTGTTCAATT
TACTAGTCTCAAAGTTTCTAGGTTGCAGCAGTGCTTCAATCGAGCGAAGC
GCGGTCTTCGGGAAGGAACGTCTCCGATAGTAATAGTAATCTCCTTATTG
ATCTTCGCTTTTCTTCTCGGCGCTGAGTCTTCTCTTCATCAAAGGACGTT
GCCATCGGCTTCGGCAGGATACGCTTTTCTGGCCAGGGAGAAGGACTGTT
CTGCGGTGTATCGTCAGCTGCATCGTTTCCATTCTGTTCCAAGTCGTTAT
CTTCGACTTATGACTACAGAACAGCACCACGATCTTCTTCAAATGATATC
GGCTGCAGCTTCGAATAGCGTCTTAACAACACCAAGTCGCCGCGCACTTT
TTGTTCACATCACCAGATGTAAACTTCATCCATGTTTACGGGCCATCGCG
AGTGCCATCACATACGCTCGCGTTACACATCGAGTTGCCGTAATATTTGT
TGACATTATTGATGGGATCAGTATTCCTCACCTCCTGGAAATATCACCAA
ATGGGGCTCTGCTCGACGAAGCCATCTTGATCCTACTCAAAGCCCCAATG
ATGGACTTTCACGGAGACAACCAAACCGTTGTTACTGATTGGGCGGAGTT
CACGGTTGTTCATGCTGTCGCCCCCAATAGTTTAACAGATGTTAACACCT
CCACGGAGTCGACAGATGTTTTCGACAGTAGAGCTCCTGCCCAGGATTAC
TTTGAAACGTTACCTAGGATTGGGAATACTGAGGATGTAGCAACCCTGGA
TAGTTTAGCTGCGCTTGACACTCACGTCTCACTGACATTATCCGAAGTTG
TCTGGTCACGCTATGCTCCCAGAACTTTGCAAGAGGGCCTATTTGAAAAT
CAGTTGCGTCCTATACAAGGGGTACCTCCCCATGTAATATCTCGTGCATC
TATTTTAGGTCGACATCCTGCGACAAGGAAGATACAGAGGACAGATTCTA
AGCTTCATGCGGAATATAATATCCCCGAAATGCTCTGGAATGGAATGGGA
GAACTTGAAAGAAAACTACTATTGCTCAAACTTGAAAGCAAAAGGAGACG
AGGAGTGAAGAATCCAAAGATTATTTTCGTACATACGCAATATGGCCTAG
GAAACCGCTTGAGAGCTCTTGGTTCCGCCATGGCCTTCGCGAGAAGGACA
GGAAGGGTTTTGGTGCTTATATGGGTCCCTGACCAACACTTGAACTGCAG
ATTCACTGACTTGTTTGTCGCCAGTGATGAGTTCGTCGTGAGCAGTTCGT
TCTCGCCTGGGGAAGAATGGCCCTTTGCCTTGAACAGAAAGAAAGATCGG
AAAATGAAGGATGTAAAGTGGTACAACTTCATGAGAGTGAATGGTGTTAA
AGTAACTTCATCCGCGCAACCCGTCCTGGATGATCGAGAACGTCACATTT
ACGTTTCAACGTGTTATGTCATCCAGTCTCCAGTCACTCCTTTCATAATA
AGGACAACTAGCTCATATTGGCAGGTTCTGCGCACTCTTTCACCTCATGT
GGATGTTGTAAGACTAGTTGAAAGGTTTGCCAGTTATCCTTTATCGAGCA
TGATCGGTATCCACATTAGGGGAAAAAACATTAAGACGGATATCAGCGGG
ATCAATGCAACAGATTATTCAGAAGAATCATCACGAACTACCGACTACTG
GAGAAATCTGACGAAAATGGATACGTTTGTCGAGGAAATGCGAAAACAGA
CTGCAGACCAATTGTTTTATGTCGCTGCTGATCAGAAGGAAGTCTTTGCA
AAGCTCGAGCATGAGTTTCCATCACGTATATTCTATACTCCACGACATTG
CGACAGTCGAGATAGGGACTGCCTACCTTTCGCACTTGCAGATATTCTAC
TGCTCGCGAAATGTTCATCCTTGCGGGGAAGTTATTGGAGCTCCTTCTCA
GAATTGTCAACGCGTATCGGCGGGGCACGGTTTCTGCTTGCAGGAATAGA
CTTTGGTCGGCCGTAG

protein sequence of Ggra4823.t1

>Ggra4823.t1 ID=Ggra4823.t1|Name=Ggra4823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=672bp
MRIRDSYFLKDGPVVQFTSLKVSRLQQCFNRAKRGLREGTSPIVIVISLL
IFAFLLGAESSLHQRTLPSASAGYAFLAREKDCSAVYRQLHRFHSVPSRY
LRLMTTEQHHDLLQMISAAASNSVLTTPSRRALFVHITRCKLHPCLRAIA
SAITYARVTHRVAVIFVDIIDGISIPHLLEISPNGALLDEAILILLKAPM
MDFHGDNQTVVTDWAEFTVVHAVAPNSLTDVNTSTESTDVFDSRAPAQDY
FETLPRIGNTEDVATLDSLAALDTHVSLTLSEVVWSRYAPRTLQEGLFEN
QLRPIQGVPPHVISRASILGRHPATRKIQRTDSKLHAEYNIPEMLWNGMG
ELERKLLLLKLESKRRRGVKNPKIIFVHTQYGLGNRLRALGSAMAFARRT
GRVLVLIWVPDQHLNCRFTDLFVASDEFVVSSSFSPGEEWPFALNRKKDR
KMKDVKWYNFMRVNGVKVTSSAQPVLDDRERHIYVSTCYVIQSPVTPFII
RTTSSYWQVLRTLSPHVDVVRLVERFASYPLSSMIGIHIRGKNIKTDISG
INATDYSEESSRTTDYWRNLTKMDTFVEEMRKQTADQLFYVAADQKEVFA
KLEHEFPSRIFYTPRHCDSRDRDCLPFALADILLLAKCSSLRGSYWSSFS
ELSTRIGGARFLLAGIDFGRP*

mRNA from alignment at tig00000090_pilon:214221..216236-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4823.t1 ID=Ggra4823.t1|Name=Ggra4823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000090_pilon:214221..216236- (Gracilaria gracilis GNS1m male)
ATGCGTATTAGGGACTCTTACTTCTTGAAAGATGGGCCGGTTGTTCAATT
TACTAGTCTCAAAGTTTCTAGGTTGCAGCAGTGCTTCAATCGAGCGAAGC
GCGGTCTTCGGGAAGGAACGTCTCCGATAGTAATAGTAATCTCCTTATTG
ATCTTCGCTTTTCTTCTCGGCGCTGAGTCTTCTCTTCATCAAAGGACGTT
GCCATCGGCTTCGGCAGGATACGCTTTTCTGGCCAGGGAGAAGGACTGTT
CTGCGGTGTATCGTCAGCTGCATCGTTTCCATTCTGTTCCAAGTCGTTAT
CTTCGACTTATGACTACAGAACAGCACCACGATCTTCTTCAAATGATATC
GGCTGCAGCTTCGAATAGCGTCTTAACAACACCAAGTCGCCGCGCACTTT
TTGTTCACATCACCAGATGTAAACTTCATCCATGTTTACGGGCCATCGCG
AGTGCCATCACATACGCTCGCGTTACACATCGAGTTGCCGTAATATTTGT
TGACATTATTGATGGGATCAGTATTCCTCACCTCCTGGAAATATCACCAA
ATGGGGCTCTGCTCGACGAAGCCATCTTGATCCTACTCAAAGCCCCAATG
ATGGACTTTCACGGAGACAACCAAACCGTTGTTACTGATTGGGCGGAGTT
CACGGTTGTTCATGCTGTCGCCCCCAATAGTTTAACAGATGTTAACACCT
CCACGGAGTCGACAGATGTTTTCGACAGTAGAGCTCCTGCCCAGGATTAC
TTTGAAACGTTACCTAGGATTGGGAATACTGAGGATGTAGCAACCCTGGA
TAGTTTAGCTGCGCTTGACACTCACGTCTCACTGACATTATCCGAAGTTG
TCTGGTCACGCTATGCTCCCAGAACTTTGCAAGAGGGCCTATTTGAAAAT
CAGTTGCGTCCTATACAAGGGGTACCTCCCCATGTAATATCTCGTGCATC
TATTTTAGGTCGACATCCTGCGACAAGGAAGATACAGAGGACAGATTCTA
AGCTTCATGCGGAATATAATATCCCCGAAATGCTCTGGAATGGAATGGGA
GAACTTGAAAGAAAACTACTATTGCTCAAACTTGAAAGCAAAAGGAGACG
AGGAGTGAAGAATCCAAAGATTATTTTCGTACATACGCAATATGGCCTAG
GAAACCGCTTGAGAGCTCTTGGTTCCGCCATGGCCTTCGCGAGAAGGACA
GGAAGGGTTTTGGTGCTTATATGGGTCCCTGACCAACACTTGAACTGCAG
ATTCACTGACTTGTTTGTCGCCAGTGATGAGTTCGTCGTGAGCAGTTCGT
TCTCGCCTGGGGAAGAATGGCCCTTTGCCTTGAACAGAAAGAAAGATCGG
AAAATGAAGGATGTAAAGTGGTACAACTTCATGAGAGTGAATGGTGTTAA
AGTAACTTCATCCGCGCAACCCGTCCTGGATGATCGAGAACGTCACATTT
ACGTTTCAACGTGTTATGTCATCCAGTCTCCAGTCACTCCTTTCATAATA
AGGACAACTAGCTCATATTGGCAGGTTCTGCGCACTCTTTCACCTCATGT
GGATGTTGTAAGACTAGTTGAAAGGTTTGCCAGTTATCCTTTATCGAGCA
TGATCGGTATCCACATTAGGGGAAAAAACATTAAGACGGATATCAGCGGG
ATCAATGCAACAGATTATTCAGAAGAATCATCACGAACTACCGACTACTG
GAGAAATCTGACGAAAATGGATACGTTTGTCGAGGAAATGCGAAAACAGA
CTGCAGACCAATTGTTTTATGTCGCTGCTGATCAGAAGGAAGTCTTTGCA
AAGCTCGAGCATGAGTTTCCATCACGTATATTCTATACTCCACGACATTG
CGACAGTCGAGATAGGGACTGCCTACCTTTCGCACTTGCAGATATTCTAC
TGCTCGCGAAATGTTCATCCTTGCGGGGAAGTTATTGGAGCTCCTTCTCA
GAATTGTCAACGCGTATCGGCGGGGCACGGTTTCTGCTTGCAGGAATAGA
CTTTGGTCGGCCGTAG

Coding sequence (CDS) from alignment at tig00000090_pilon:214221..216236-

>Ggra4823.t1 ID=Ggra4823.t1|Name=Ggra4823.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2016bp|location=Sequence derived from alignment at tig00000090_pilon:214221..216236- (Gracilaria gracilis GNS1m male)
ATGCGTATTAGGGACTCTTACTTCTTGAAAGATGGGCCGGTTGTTCAATT
TACTAGTCTCAAAGTTTCTAGGTTGCAGCAGTGCTTCAATCGAGCGAAGC
GCGGTCTTCGGGAAGGAACGTCTCCGATAGTAATAGTAATCTCCTTATTG
ATCTTCGCTTTTCTTCTCGGCGCTGAGTCTTCTCTTCATCAAAGGACGTT
GCCATCGGCTTCGGCAGGATACGCTTTTCTGGCCAGGGAGAAGGACTGTT
CTGCGGTGTATCGTCAGCTGCATCGTTTCCATTCTGTTCCAAGTCGTTAT
CTTCGACTTATGACTACAGAACAGCACCACGATCTTCTTCAAATGATATC
GGCTGCAGCTTCGAATAGCGTCTTAACAACACCAAGTCGCCGCGCACTTT
TTGTTCACATCACCAGATGTAAACTTCATCCATGTTTACGGGCCATCGCG
AGTGCCATCACATACGCTCGCGTTACACATCGAGTTGCCGTAATATTTGT
TGACATTATTGATGGGATCAGTATTCCTCACCTCCTGGAAATATCACCAA
ATGGGGCTCTGCTCGACGAAGCCATCTTGATCCTACTCAAAGCCCCAATG
ATGGACTTTCACGGAGACAACCAAACCGTTGTTACTGATTGGGCGGAGTT
CACGGTTGTTCATGCTGTCGCCCCCAATAGTTTAACAGATGTTAACACCT
CCACGGAGTCGACAGATGTTTTCGACAGTAGAGCTCCTGCCCAGGATTAC
TTTGAAACGTTACCTAGGATTGGGAATACTGAGGATGTAGCAACCCTGGA
TAGTTTAGCTGCGCTTGACACTCACGTCTCACTGACATTATCCGAAGTTG
TCTGGTCACGCTATGCTCCCAGAACTTTGCAAGAGGGCCTATTTGAAAAT
CAGTTGCGTCCTATACAAGGGGTACCTCCCCATGTAATATCTCGTGCATC
TATTTTAGGTCGACATCCTGCGACAAGGAAGATACAGAGGACAGATTCTA
AGCTTCATGCGGAATATAATATCCCCGAAATGCTCTGGAATGGAATGGGA
GAACTTGAAAGAAAACTACTATTGCTCAAACTTGAAAGCAAAAGGAGACG
AGGAGTGAAGAATCCAAAGATTATTTTCGTACATACGCAATATGGCCTAG
GAAACCGCTTGAGAGCTCTTGGTTCCGCCATGGCCTTCGCGAGAAGGACA
GGAAGGGTTTTGGTGCTTATATGGGTCCCTGACCAACACTTGAACTGCAG
ATTCACTGACTTGTTTGTCGCCAGTGATGAGTTCGTCGTGAGCAGTTCGT
TCTCGCCTGGGGAAGAATGGCCCTTTGCCTTGAACAGAAAGAAAGATCGG
AAAATGAAGGATGTAAAGTGGTACAACTTCATGAGAGTGAATGGTGTTAA
AGTAACTTCATCCGCGCAACCCGTCCTGGATGATCGAGAACGTCACATTT
ACGTTTCAACGTGTTATGTCATCCAGTCTCCAGTCACTCCTTTCATAATA
AGGACAACTAGCTCATATTGGCAGGTTCTGCGCACTCTTTCACCTCATGT
GGATGTTGTAAGACTAGTTGAAAGGTTTGCCAGTTATCCTTTATCGAGCA
TGATCGGTATCCACATTAGGGGAAAAAACATTAAGACGGATATCAGCGGG
ATCAATGCAACAGATTATTCAGAAGAATCATCACGAACTACCGACTACTG
GAGAAATCTGACGAAAATGGATACGTTTGTCGAGGAAATGCGAAAACAGA
CTGCAGACCAATTGTTTTATGTCGCTGCTGATCAGAAGGAAGTCTTTGCA
AAGCTCGAGCATGAGTTTCCATCACGTATATTCTATACTCCACGACATTG
CGACAGTCGAGATAGGGACTGCCTACCTTTCGCACTTGCAGATATTCTAC
TGCTCGCGAAATGTTCATCCTTGCGGGGAAGTTATTGGAGCTCCTTCTCA
GAATTGTCAACGCGTATCGGCGGGGCACGGTTTCTGCTTGCAGGAATAGA
CTTTGGTCGGCCGTAG