Ggra4813.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4813.t1
Unique NameGgra4813.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000090_piloncontigtig00000090_pilon:85182..86483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue1.69e-13
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4813Ggra4813Gracilaria gracilis GNS1m malegenetig00000090_pilon 85182..86483 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4813.t1.stop1Ggra4813.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000090_pilon 85182..85184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4813.t1.CDS1Ggra4813.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000090_pilon 85182..86483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4813.t1.exon1Ggra4813.t1.exon1Gracilaria gracilis GNS1m maleexontig00000090_pilon 85182..86483 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4813.t1.start1Ggra4813.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000090_pilon 86481..86483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4813.t1Ggra4813.t1Gracilaria gracilis GNS1m malepolypeptidetig00000090_pilon 85182..86483 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4813.t1 ID=Ggra4813.t1|Name=Ggra4813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MVDSWQGDGEEPSTYHFVIPSRSKCAVLVHRSRSEIHLPVLSPPRTEAYE
WVINWEKDTDALHDVVKAELGLNVCVLRPLWVRPNCRYGIEEVVLLAEIL
DVDFEVPRGLEWIENKEALESKWKVIGHELEPRSLLSAFVDLSDSRLPNN
RVPWRSSGWFKETVNWITSVLQDNNMKLEQAVAVVQNTFTSCVLRCNVKS
LDLPTSSTSRKEDILYIKAVHSRISTASMIAAIYDVVAGVAPALVAVNKA
RNMYVERSVASYRCPDVNTALLMKTIAGVHKRSIPYLEDLKHAGVPVYTT
QWLQSNVKEILRYSLVVESGDSVSMAKLGAKVSRLESCLKELSSYNIPHT
LLHGDLHSLNIGDSVDNSYHYIFDWNNAYIGHPFSDFAVMRFSEDDPEDE
QELAEKVYFQYWQEYGEPRALQHISQLALLSYF*
back to top

spliced messenger RNA

>Ggra4813.t1 ID=Ggra4813.t1|Name=Ggra4813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000090_pilon:85182..86483- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGACTCATGGCAAGGAGATGGTGAAGAACCAAGTACCTACCATTT
CGTCATTCCCTCACGATCGAAATGCGCTGTTCTTGTTCATCGGTCGAGGT
CTGAGATACACCTCCCTGTACTGTCTCCGCCGAGAACTGAAGCATATGAA
TGGGTCATTAACTGGGAGAAGGATACTGATGCACTGCACGACGTGGTGAA
GGCTGAGCTTGGTTTGAACGTATGCGTCCTTCGACCTCTTTGGGTTCGTC
CAAATTGTAGATATGGAATTGAAGAAGTCGTGTTGCTTGCTGAAATTCTC
GATGTCGATTTCGAAGTCCCAAGAGGCCTTGAATGGATTGAGAACAAAGA
GGCTCTAGAGAGTAAGTGGAAGGTGATTGGTCATGAACTTGAGCCGAGGA
GTTTGCTATCTGCGTTCGTCGATTTGTCAGACAGCAGACTACCAAACAAC
CGTGTGCCGTGGCGTTCTTCGGGTTGGTTCAAAGAAACTGTGAACTGGAT
TACATCTGTTTTGCAAGATAATAACATGAAGTTGGAACAGGCAGTGGCAG
TCGTGCAGAACACATTCACTTCATGTGTACTGAGATGTAACGTAAAATCT
CTCGATTTGCCAACTTCAAGTACCTCTAGGAAAGAAGATATCCTTTACAT
AAAAGCGGTGCACTCACGAATTTCAACAGCGTCGATGATTGCAGCGATTT
ATGACGTGGTCGCAGGGGTTGCTCCAGCTCTTGTGGCCGTGAACAAAGCT
CGCAACATGTACGTGGAAAGAAGTGTAGCTTCTTACCGTTGTCCGGATGT
TAACACCGCGTTGCTGATGAAAACCATAGCAGGCGTTCATAAGCGTTCTA
TACCATACCTGGAGGACCTTAAACATGCCGGAGTGCCCGTTTATACAACG
CAGTGGCTCCAATCAAATGTAAAGGAGATTTTACGGTACTCCCTTGTGGT
TGAAAGTGGAGATAGCGTCTCTATGGCTAAACTGGGAGCGAAAGTTTCCC
GACTTGAGTCATGCTTGAAAGAACTGTCATCCTACAACATTCCGCATACT
CTTCTTCATGGTGATCTCCATTCCCTAAATATTGGCGATTCTGTGGATAA
TTCTTACCACTATATCTTTGACTGGAATAATGCGTATATTGGGCATCCGT
TCTCTGACTTTGCCGTGATGCGGTTCTCGGAAGACGACCCGGAAGACGAA
CAAGAGCTTGCTGAAAAGGTATATTTTCAATACTGGCAGGAATATGGGGA
GCCAAGAGCACTTCAACATATTTCTCAGCTGGCACTATTATCGTACTTTT
GA
back to top

protein sequence of Ggra4813.t1

>Ggra4813.t1 ID=Ggra4813.t1|Name=Ggra4813.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MVDSWQGDGEEPSTYHFVIPSRSKCAVLVHRSRSEIHLPVLSPPRTEAYE
WVINWEKDTDALHDVVKAELGLNVCVLRPLWVRPNCRYGIEEVVLLAEIL
DVDFEVPRGLEWIENKEALESKWKVIGHELEPRSLLSAFVDLSDSRLPNN
RVPWRSSGWFKETVNWITSVLQDNNMKLEQAVAVVQNTFTSCVLRCNVKS
LDLPTSSTSRKEDILYIKAVHSRISTASMIAAIYDVVAGVAPALVAVNKA
RNMYVERSVASYRCPDVNTALLMKTIAGVHKRSIPYLEDLKHAGVPVYTT
QWLQSNVKEILRYSLVVESGDSVSMAKLGAKVSRLESCLKELSSYNIPHT
LLHGDLHSLNIGDSVDNSYHYIFDWNNAYIGHPFSDFAVMRFSEDDPEDE
QELAEKVYFQYWQEYGEPRALQHISQLALLSYF*
back to top

mRNA from alignment at tig00000090_pilon:85182..86483-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4813.t1 ID=Ggra4813.t1|Name=Ggra4813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000090_pilon:85182..86483- (Gracilaria gracilis GNS1m male)
ATGGTAGACTCATGGCAAGGAGATGGTGAAGAACCAAGTACCTACCATTT
CGTCATTCCCTCACGATCGAAATGCGCTGTTCTTGTTCATCGGTCGAGGT
CTGAGATACACCTCCCTGTACTGTCTCCGCCGAGAACTGAAGCATATGAA
TGGGTCATTAACTGGGAGAAGGATACTGATGCACTGCACGACGTGGTGAA
GGCTGAGCTTGGTTTGAACGTATGCGTCCTTCGACCTCTTTGGGTTCGTC
CAAATTGTAGATATGGAATTGAAGAAGTCGTGTTGCTTGCTGAAATTCTC
GATGTCGATTTCGAAGTCCCAAGAGGCCTTGAATGGATTGAGAACAAAGA
GGCTCTAGAGAGTAAGTGGAAGGTGATTGGTCATGAACTTGAGCCGAGGA
GTTTGCTATCTGCGTTCGTCGATTTGTCAGACAGCAGACTACCAAACAAC
CGTGTGCCGTGGCGTTCTTCGGGTTGGTTCAAAGAAACTGTGAACTGGAT
TACATCTGTTTTGCAAGATAATAACATGAAGTTGGAACAGGCAGTGGCAG
TCGTGCAGAACACATTCACTTCATGTGTACTGAGATGTAACGTAAAATCT
CTCGATTTGCCAACTTCAAGTACCTCTAGGAAAGAAGATATCCTTTACAT
AAAAGCGGTGCACTCACGAATTTCAACAGCGTCGATGATTGCAGCGATTT
ATGACGTGGTCGCAGGGGTTGCTCCAGCTCTTGTGGCCGTGAACAAAGCT
CGCAACATGTACGTGGAAAGAAGTGTAGCTTCTTACCGTTGTCCGGATGT
TAACACCGCGTTGCTGATGAAAACCATAGCAGGCGTTCATAAGCGTTCTA
TACCATACCTGGAGGACCTTAAACATGCCGGAGTGCCCGTTTATACAACG
CAGTGGCTCCAATCAAATGTAAAGGAGATTTTACGGTACTCCCTTGTGGT
TGAAAGTGGAGATAGCGTCTCTATGGCTAAACTGGGAGCGAAAGTTTCCC
GACTTGAGTCATGCTTGAAAGAACTGTCATCCTACAACATTCCGCATACT
CTTCTTCATGGTGATCTCCATTCCCTAAATATTGGCGATTCTGTGGATAA
TTCTTACCACTATATCTTTGACTGGAATAATGCGTATATTGGGCATCCGT
TCTCTGACTTTGCCGTGATGCGGTTCTCGGAAGACGACCCGGAAGACGAA
CAAGAGCTTGCTGAAAAGGTATATTTTCAATACTGGCAGGAATATGGGGA
GCCAAGAGCACTTCAACATATTTCTCAGCTGGCACTATTATCGTACTTTT
GA
back to top

Coding sequence (CDS) from alignment at tig00000090_pilon:85182..86483-

>Ggra4813.t1 ID=Ggra4813.t1|Name=Ggra4813.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000090_pilon:85182..86483- (Gracilaria gracilis GNS1m male)
ATGGTAGACTCATGGCAAGGAGATGGTGAAGAACCAAGTACCTACCATTT
CGTCATTCCCTCACGATCGAAATGCGCTGTTCTTGTTCATCGGTCGAGGT
CTGAGATACACCTCCCTGTACTGTCTCCGCCGAGAACTGAAGCATATGAA
TGGGTCATTAACTGGGAGAAGGATACTGATGCACTGCACGACGTGGTGAA
GGCTGAGCTTGGTTTGAACGTATGCGTCCTTCGACCTCTTTGGGTTCGTC
CAAATTGTAGATATGGAATTGAAGAAGTCGTGTTGCTTGCTGAAATTCTC
GATGTCGATTTCGAAGTCCCAAGAGGCCTTGAATGGATTGAGAACAAAGA
GGCTCTAGAGAGTAAGTGGAAGGTGATTGGTCATGAACTTGAGCCGAGGA
GTTTGCTATCTGCGTTCGTCGATTTGTCAGACAGCAGACTACCAAACAAC
CGTGTGCCGTGGCGTTCTTCGGGTTGGTTCAAAGAAACTGTGAACTGGAT
TACATCTGTTTTGCAAGATAATAACATGAAGTTGGAACAGGCAGTGGCAG
TCGTGCAGAACACATTCACTTCATGTGTACTGAGATGTAACGTAAAATCT
CTCGATTTGCCAACTTCAAGTACCTCTAGGAAAGAAGATATCCTTTACAT
AAAAGCGGTGCACTCACGAATTTCAACAGCGTCGATGATTGCAGCGATTT
ATGACGTGGTCGCAGGGGTTGCTCCAGCTCTTGTGGCCGTGAACAAAGCT
CGCAACATGTACGTGGAAAGAAGTGTAGCTTCTTACCGTTGTCCGGATGT
TAACACCGCGTTGCTGATGAAAACCATAGCAGGCGTTCATAAGCGTTCTA
TACCATACCTGGAGGACCTTAAACATGCCGGAGTGCCCGTTTATACAACG
CAGTGGCTCCAATCAAATGTAAAGGAGATTTTACGGTACTCCCTTGTGGT
TGAAAGTGGAGATAGCGTCTCTATGGCTAAACTGGGAGCGAAAGTTTCCC
GACTTGAGTCATGCTTGAAAGAACTGTCATCCTACAACATTCCGCATACT
CTTCTTCATGGTGATCTCCATTCCCTAAATATTGGCGATTCTGTGGATAA
TTCTTACCACTATATCTTTGACTGGAATAATGCGTATATTGGGCATCCGT
TCTCTGACTTTGCCGTGATGCGGTTCTCGGAAGACGACCCGGAAGACGAA
CAAGAGCTTGCTGAAAAGGTATATTTTCAATACTGGCAGGAATATGGGGA
GCCAAGAGCACTTCAACATATTTCTCAGCTGGCACTATTATCGTACTTTT
GA
back to top