Ggra4811.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4811.t1
Unique NameGgra4811.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000686_piloncontigtig00000686_pilon:13571..14011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog649349.Lbys_2869
PFAMsHATPase_c_5,His_kinase
Max annot lvl976|Bacteroidetes
Evalue1.45e-34
EggNOG OGsCOG2972@1|root,COG2972@2|Bacteria,4NHM5@976|Bacteroidetes,47N1A@768503|Cytophagia
DescriptionHistidine kinase
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4811Ggra4811Gracilaria gracilis GNS1m malegenetig00000686_pilon 13571..14011 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4811.t1.start1Ggra4811.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000686_pilon 13571..13573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4811.t1.CDS1Ggra4811.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000686_pilon 13571..14011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4811.t1.exon1Ggra4811.t1.exon1Gracilaria gracilis GNS1m maleexontig00000686_pilon 13571..14011 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4811.t1.stop1Ggra4811.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000686_pilon 14009..14011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4811.t1Ggra4811.t1Gracilaria gracilis GNS1m malepolypeptidetig00000686_pilon 13571..14011 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4811.t1 ID=Ggra4811.t1|Name=Ggra4811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MSLRGLLYQGMSTAILLSRDVRLLGNVKRSEIYLIRSKSDQAESVTIKLS
DLMRYMLYSSGEEQVPLSQELEYLQNYIDLQRIRFEEDVDIHFTLSGQAE
MQFIEPMLLIPFVENAFKHGVGMIVDPIIDIRITVDENCLDFWVKK*
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spliced messenger RNA

>Ggra4811.t1 ID=Ggra4811.t1|Name=Ggra4811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000686_pilon:13571..14011+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTGCGAGGGTTGCTGTATCAGGGAATGTCGACTGCCATCTTGCT
GAGCAGAGATGTGAGGTTATTGGGAAACGTCAAAAGATCAGAGATATACC
TTATTCGTTCAAAATCTGATCAAGCGGAGTCGGTGACGATTAAGCTGTCT
GATTTAATGCGTTACATGCTCTATTCTTCCGGAGAAGAGCAGGTGCCCTT
ATCACAAGAATTAGAATACCTTCAAAATTATATTGACCTGCAACGGATCC
GCTTTGAAGAAGATGTGGATATCCACTTTACATTGTCAGGCCAAGCAGAA
ATGCAGTTTATCGAGCCAATGTTGCTTATTCCTTTTGTTGAGAATGCCTT
TAAACATGGAGTTGGAATGATTGTCGATCCAATTATTGACATTAGGATCA
CTGTAGATGAAAACTGTCTGGATTTTTGGGTGAAAAAATAA
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protein sequence of Ggra4811.t1

>Ggra4811.t1 ID=Ggra4811.t1|Name=Ggra4811.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MSLRGLLYQGMSTAILLSRDVRLLGNVKRSEIYLIRSKSDQAESVTIKLS
DLMRYMLYSSGEEQVPLSQELEYLQNYIDLQRIRFEEDVDIHFTLSGQAE
MQFIEPMLLIPFVENAFKHGVGMIVDPIIDIRITVDENCLDFWVKK*
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mRNA from alignment at tig00000686_pilon:13571..14011+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4811.t1 ID=Ggra4811.t1|Name=Ggra4811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000686_pilon:13571..14011+ (Gracilaria gracilis GNS1m male)
ATGTCGCTGCGAGGGTTGCTGTATCAGGGAATGTCGACTGCCATCTTGCT
GAGCAGAGATGTGAGGTTATTGGGAAACGTCAAAAGATCAGAGATATACC
TTATTCGTTCAAAATCTGATCAAGCGGAGTCGGTGACGATTAAGCTGTCT
GATTTAATGCGTTACATGCTCTATTCTTCCGGAGAAGAGCAGGTGCCCTT
ATCACAAGAATTAGAATACCTTCAAAATTATATTGACCTGCAACGGATCC
GCTTTGAAGAAGATGTGGATATCCACTTTACATTGTCAGGCCAAGCAGAA
ATGCAGTTTATCGAGCCAATGTTGCTTATTCCTTTTGTTGAGAATGCCTT
TAAACATGGAGTTGGAATGATTGTCGATCCAATTATTGACATTAGGATCA
CTGTAGATGAAAACTGTCTGGATTTTTGGGTGAAAAAATAA
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Coding sequence (CDS) from alignment at tig00000686_pilon:13571..14011+

>Ggra4811.t1 ID=Ggra4811.t1|Name=Ggra4811.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000686_pilon:13571..14011+ (Gracilaria gracilis GNS1m male)
ATGTCGCTGCGAGGGTTGCTGTATCAGGGAATGTCGACTGCCATCTTGCT
GAGCAGAGATGTGAGGTTATTGGGAAACGTCAAAAGATCAGAGATATACC
TTATTCGTTCAAAATCTGATCAAGCGGAGTCGGTGACGATTAAGCTGTCT
GATTTAATGCGTTACATGCTCTATTCTTCCGGAGAAGAGCAGGTGCCCTT
ATCACAAGAATTAGAATACCTTCAAAATTATATTGACCTGCAACGGATCC
GCTTTGAAGAAGATGTGGATATCCACTTTACATTGTCAGGCCAAGCAGAA
ATGCAGTTTATCGAGCCAATGTTGCTTATTCCTTTTGTTGAGAATGCCTT
TAAACATGGAGTTGGAATGATTGTCGATCCAATTATTGACATTAGGATCA
CTGTAGATGAAAACTGTCTGGATTTTTGGGTGAAAAAATAA
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