Ggra4810.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4810.t1
Unique NameGgra4810.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000686_piloncontigtig00000686_pilon:2..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T008373
PFAMsWD40
Max annot lvl121069|Pythiales
Evalue2.26e-71
EggNOG OGsCOG2319@1|root,KOG0305@2759|Eukaryota,1MGDM@121069|Pythiales
DescriptionWD repeat-containing protein srw1. Source PGD
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4810Ggra4810Gracilaria gracilis GNS1m malegenetig00000686_pilon 2..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4810.t1Ggra4810.t1Gracilaria gracilis GNS1m malepolypeptidetig00000686_pilon 2..661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4810.t1.CDS1Ggra4810.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000686_pilon 2..524 -
Ggra4810.t1.CDS2Ggra4810.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000686_pilon 618..661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4810.t1.exon1Ggra4810.t1.exon1Gracilaria gracilis GNS1m maleexontig00000686_pilon 2..524 -
Ggra4810.t1.exon2Ggra4810.t1.exon2Gracilaria gracilis GNS1m maleexontig00000686_pilon 618..661 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4810.t1.intron1Ggra4810.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000686_pilon 525..617 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4810.t1.start1Ggra4810.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000686_pilon 659..661 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4810.t1 ID=Ggra4810.t1|Name=Ggra4810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MVPILPLVLAQALCSSGGRYTNIFNRDLRCKEPFFAKLAGHAQEVCGLKW
SSDDTQLASGGNDNALFVWSAASLGSVGSLSTSTSGAAYNTPLMRFDYHV
AAVKAIAWSPHARGLHASGGGTADRIIRFWSTTTSSALAAVDTGSQVCNP
AWSKNVNEIVSTHGYSQKQIIVWKYPSLSKVVTLMGHSQ
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spliced messenger RNA

>Ggra4810.t1 ID=Ggra4810.t1|Name=Ggra4810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000686_pilon:2..661- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCCATCTTGCCATTGGTACTCGCTCAGGCTTTGTGCAGTTCGGG
CGGTCGCTACACAAACATCTTCAACCGCGATTTGCGATGTAAGGAGCCCT
TCTTTGCAAAACTAGCGGGTCACGCTCAGGAGGTGTGCGGATTGAAGTGG
TCTTCGGATGATACACAGCTTGCCTCCGGAGGCAATGACAATGCATTGTT
TGTGTGGAGTGCTGCTAGTTTGGGTAGCGTCGGTTCGCTCAGCACATCTA
CCAGCGGAGCGGCATATAACACACCCCTCATGAGATTTGATTACCATGTA
GCTGCCGTGAAGGCTATTGCATGGTCGCCACATGCGAGGGGTTTGCATGC
ATCTGGCGGCGGTACAGCTGATCGTATAATACGTTTCTGGAGTACTACAA
CCAGCTCGGCCCTTGCAGCTGTCGATACCGGATCTCAGGTATGCAACCCG
GCATGGTCGAAGAATGTGAATGAGATTGTATCGACGCATGGCTACAGTCA
AAAGCAAATCATTGTGTGGAAGTATCCCAGTTTGTCTAAAGTTGTTACTC
TCATGGGGCATTCGCAG
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protein sequence of Ggra4810.t1

>Ggra4810.t1 ID=Ggra4810.t1|Name=Ggra4810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MVPILPLVLAQALCSSGGRYTNIFNRDLRCKEPFFAKLAGHAQEVCGLKW
SSDDTQLASGGNDNALFVWSAASLGSVGSLSTSTSGAAYNTPLMRFDYHV
AAVKAIAWSPHARGLHASGGGTADRIIRFWSTTTSSALAAVDTGSQVCNP
AWSKNVNEIVSTHGYSQKQIIVWKYPSLSKVVTLMGHSQ
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mRNA from alignment at tig00000686_pilon:2..661-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4810.t1 ID=Ggra4810.t1|Name=Ggra4810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000686_pilon:2..661- (Gracilaria gracilis GNS1m male)
ATGGTACCCATCTTGCCATTGGTACTCGCTCAGGCTTTGTGCAGGTGTGG
GATATTGCTTCCAAGAAATTCGTCAGAACAATGGCTGGTCTTCTTCTTCT
TCTTCTTCTTCCTTGCGTGGAATTCGTTCGTGCTCAGTTCGGGCGGTCGC
TACACAAACATCTTCAACCGCGATTTGCGATGTAAGGAGCCCTTCTTTGC
AAAACTAGCGGGTCACGCTCAGGAGGTGTGCGGATTGAAGTGGTCTTCGG
ATGATACACAGCTTGCCTCCGGAGGCAATGACAATGCATTGTTTGTGTGG
AGTGCTGCTAGTTTGGGTAGCGTCGGTTCGCTCAGCACATCTACCAGCGG
AGCGGCATATAACACACCCCTCATGAGATTTGATTACCATGTAGCTGCCG
TGAAGGCTATTGCATGGTCGCCACATGCGAGGGGTTTGCATGCATCTGGC
GGCGGTACAGCTGATCGTATAATACGTTTCTGGAGTACTACAACCAGCTC
GGCCCTTGCAGCTGTCGATACCGGATCTCAGGTATGCAACCCGGCATGGT
CGAAGAATGTGAATGAGATTGTATCGACGCATGGCTACAGTCAAAAGCAA
ATCATTGTGTGGAAGTATCCCAGTTTGTCTAAAGTTGTTACTCTCATGGG
GCATTCGCAG
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Coding sequence (CDS) from alignment at tig00000686_pilon:2..661-

>Ggra4810.t1 ID=Ggra4810.t1|Name=Ggra4810.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000686_pilon:2..661- (Gracilaria gracilis GNS1m male)
ATGGTACCCATCTTGCCATTGGTACTCGCTCAGGCTTTGTGCAGTTCGGG
CGGTCGCTACACAAACATCTTCAACCGCGATTTGCGATGTAAGGAGCCCT
TCTTTGCAAAACTAGCGGGTCACGCTCAGGAGGTGTGCGGATTGAAGTGG
TCTTCGGATGATACACAGCTTGCCTCCGGAGGCAATGACAATGCATTGTT
TGTGTGGAGTGCTGCTAGTTTGGGTAGCGTCGGTTCGCTCAGCACATCTA
CCAGCGGAGCGGCATATAACACACCCCTCATGAGATTTGATTACCATGTA
GCTGCCGTGAAGGCTATTGCATGGTCGCCACATGCGAGGGGTTTGCATGC
ATCTGGCGGCGGTACAGCTGATCGTATAATACGTTTCTGGAGTACTACAA
CCAGCTCGGCCCTTGCAGCTGTCGATACCGGATCTCAGGTATGCAACCCG
GCATGGTCGAAGAATGTGAATGAGATTGTATCGACGCATGGCTACAGTCA
AAAGCAAATCATTGTGTGGAAGTATCCCAGTTTGTCTAAAGTTGTTACTC
TCATGGGGCATTCGCAG
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