Ggra4806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4806.t1
Unique NameGgra4806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000174_piloncontigtig00000174_pilon:38460..39538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4806Ggra4806Gracilaria gracilis GNS1m malegenetig00000174_pilon 38460..39538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4806.t1Ggra4806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000174_pilon 38460..39538 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4806.t1.stop1Ggra4806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000174_pilon 38460..38462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4806.t1.CDS1Ggra4806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000174_pilon 38460..38494 -
Ggra4806.t1.CDS2Ggra4806.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000174_pilon 38611..39538 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4806.t1.exon1Ggra4806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000174_pilon 38460..38494 -
Ggra4806.t1.exon2Ggra4806.t1.exon2Gracilaria gracilis GNS1m maleexontig00000174_pilon 38611..39538 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4806.t1.intron1Ggra4806.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000174_pilon 38495..38610 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4806.t1.start1Ggra4806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000174_pilon 39536..39538 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4806.t1 ID=Ggra4806.t1|Name=Ggra4806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp
MESQSHHQAANPASYPTWRFTEELIELTAENYFQWFQNLQDILTEHEYNE
LIDPNFQPQTSEQHKAIASLRRIITKSVTQDVNNLLADPTIFSHSPAEIV
KVIQEALDGQVTKDYYSLNTQASNLRRTGTISDYINQHIAIRRKQIIAQA
PGIADERVTVNFILQGLVDDDRFANRAITLMLDNPPMTIKDAQHRLEQYD
SLTTQQASNATVQMSSNASYPRSQTRNIPYRRGRGRNRYGGASNRSLRNA
IADLTKKIDGLQTAKPRRGRGGSAAKQASSSHDAIASEIIEAMQALEHAT
TDDTPDVQQHEEEGNTEPNQ*
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spliced messenger RNA

>Ggra4806.t1 ID=Ggra4806.t1|Name=Ggra4806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00000174_pilon:38460..39538- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTCAGTCTCACCATCAAGCAGCAAACCCCGCAAGTTACCCGAC
TTGGCGATTTACTGAAGAACTTATTGAATTGACTGCAGAAAACTACTTTC
AGTGGTTTCAGAACTTACAAGATATTCTCACTGAACATGAGTACAACGAG
CTTATCGATCCCAACTTTCAGCCTCAAACCTCGGAACAACACAAAGCTAT
TGCTAGTCTCCGCCGAATTATCACAAAAAGTGTCACACAAGATGTCAACA
ATTTGCTTGCAGACCCCACGATCTTTTCCCACTCCCCGGCAGAAATAGTC
AAAGTTATTCAGGAAGCACTCGACGGACAAGTCACGAAGGACTATTACAG
TCTTAACACCCAAGCGAGCAACCTCCGCCGTACAGGCACAATCTCAGACT
ATATAAATCAGCACATTGCTATCCGTCGGAAGCAGATCATCGCGCAAGCG
CCAGGTATTGCAGATGAACGCGTCACCGTCAACTTCATTTTACAAGGTTT
GGTAGACGACGACCGGTTCGCGAACCGCGCCATCACTCTGATGTTGGATA
ACCCTCCAATGACAATCAAAGACGCACAGCATCGCCTCGAACAGTATGAC
AGCCTCACTACCCAACAGGCGTCGAATGCAACCGTCCAGATGTCAAGCAA
CGCTTCTTACCCTCGCAGCCAAACCCGCAACATACCCTACCGACGCGGTC
GTGGTCGAAACCGCTACGGTGGCGCCAGCAACCGCAGTCTACGGAATGCC
ATCGCAGATCTTACCAAGAAAATCGATGGTTTGCAAACTGCAAAACCTAG
ACGTGGTCGCGGTGGCTCTGCCGCGAAACAAGCCTCTTCCAGCCATGATG
CCATAGCGTCCGAAATCATCGAGGCCATGCAAGCCCTGGAGCATGCCACG
ACTGATGACACACCGGATGTTCAGCAACACGAAGAGGAGGGGAACACTGA
ACCTAATCAGTAA
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protein sequence of Ggra4806.t1

>Ggra4806.t1 ID=Ggra4806.t1|Name=Ggra4806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=321bp
MESQSHHQAANPASYPTWRFTEELIELTAENYFQWFQNLQDILTEHEYNE
LIDPNFQPQTSEQHKAIASLRRIITKSVTQDVNNLLADPTIFSHSPAEIV
KVIQEALDGQVTKDYYSLNTQASNLRRTGTISDYINQHIAIRRKQIIAQA
PGIADERVTVNFILQGLVDDDRFANRAITLMLDNPPMTIKDAQHRLEQYD
SLTTQQASNATVQMSSNASYPRSQTRNIPYRRGRGRNRYGGASNRSLRNA
IADLTKKIDGLQTAKPRRGRGGSAAKQASSSHDAIASEIIEAMQALEHAT
TDDTPDVQQHEEEGNTEPNQ*
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mRNA from alignment at tig00000174_pilon:38460..39538-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4806.t1 ID=Ggra4806.t1|Name=Ggra4806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1079bp|location=Sequence derived from alignment at tig00000174_pilon:38460..39538- (Gracilaria gracilis GNS1m male)
ATGGAGTCTCAGTCTCACCATCAAGCAGCAAACCCCGCAAGTTACCCGAC
TTGGCGATTTACTGAAGAACTTATTGAATTGACTGCAGAAAACTACTTTC
AGTGGTTTCAGAACTTACAAGATATTCTCACTGAACATGAGTACAACGAG
CTTATCGATCCCAACTTTCAGCCTCAAACCTCGGAACAACACAAAGCTAT
TGCTAGTCTCCGCCGAATTATCACAAAAAGTGTCACACAAGATGTCAACA
ATTTGCTTGCAGACCCCACGATCTTTTCCCACTCCCCGGCAGAAATAGTC
AAAGTTATTCAGGAAGCACTCGACGGACAAGTCACGAAGGACTATTACAG
TCTTAACACCCAAGCGAGCAACCTCCGCCGTACAGGCACAATCTCAGACT
ATATAAATCAGCACATTGCTATCCGTCGGAAGCAGATCATCGCGCAAGCG
CCAGGTATTGCAGATGAACGCGTCACCGTCAACTTCATTTTACAAGGTTT
GGTAGACGACGACCGGTTCGCGAACCGCGCCATCACTCTGATGTTGGATA
ACCCTCCAATGACAATCAAAGACGCACAGCATCGCCTCGAACAGTATGAC
AGCCTCACTACCCAACAGGCGTCGAATGCAACCGTCCAGATGTCAAGCAA
CGCTTCTTACCCTCGCAGCCAAACCCGCAACATACCCTACCGACGCGGTC
GTGGTCGAAACCGCTACGGTGGCGCCAGCAACCGCAGTCTACGGAATGCC
ATCGCAGATCTTACCAAGAAAATCGATGGTTTGCAAACTGCAAAACCTAG
ACGTGGTCGCGGTGGCTCTGCCGCGAAACAAGCCTCTTCCAGCCATGATG
CCATAGCGTCCGAAATCATCGAGGCCATGCAAGCCCTGGAGCATGCCACG
ACTGATGACACACCGGATGTTCAGCAACGTACGTACACACTGGATTCCGC
AGCCCACCCTACTATCATATCACATGATACCAACGACGCCATTAACCTAC
GCTGTCCGATCCAAACTCATACGGCCTCTCCGCACCCGCTACAGACGAAG
AGGAGGGGAACACTGAACCTAATCAGTAA
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Coding sequence (CDS) from alignment at tig00000174_pilon:38460..39538-

>Ggra4806.t1 ID=Ggra4806.t1|Name=Ggra4806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00000174_pilon:38460..39538- (Gracilaria gracilis GNS1m male)
ATGGAGTCTCAGTCTCACCATCAAGCAGCAAACCCCGCAAGTTACCCGAC
TTGGCGATTTACTGAAGAACTTATTGAATTGACTGCAGAAAACTACTTTC
AGTGGTTTCAGAACTTACAAGATATTCTCACTGAACATGAGTACAACGAG
CTTATCGATCCCAACTTTCAGCCTCAAACCTCGGAACAACACAAAGCTAT
TGCTAGTCTCCGCCGAATTATCACAAAAAGTGTCACACAAGATGTCAACA
ATTTGCTTGCAGACCCCACGATCTTTTCCCACTCCCCGGCAGAAATAGTC
AAAGTTATTCAGGAAGCACTCGACGGACAAGTCACGAAGGACTATTACAG
TCTTAACACCCAAGCGAGCAACCTCCGCCGTACAGGCACAATCTCAGACT
ATATAAATCAGCACATTGCTATCCGTCGGAAGCAGATCATCGCGCAAGCG
CCAGGTATTGCAGATGAACGCGTCACCGTCAACTTCATTTTACAAGGTTT
GGTAGACGACGACCGGTTCGCGAACCGCGCCATCACTCTGATGTTGGATA
ACCCTCCAATGACAATCAAAGACGCACAGCATCGCCTCGAACAGTATGAC
AGCCTCACTACCCAACAGGCGTCGAATGCAACCGTCCAGATGTCAAGCAA
CGCTTCTTACCCTCGCAGCCAAACCCGCAACATACCCTACCGACGCGGTC
GTGGTCGAAACCGCTACGGTGGCGCCAGCAACCGCAGTCTACGGAATGCC
ATCGCAGATCTTACCAAGAAAATCGATGGTTTGCAAACTGCAAAACCTAG
ACGTGGTCGCGGTGGCTCTGCCGCGAAACAAGCCTCTTCCAGCCATGATG
CCATAGCGTCCGAAATCATCGAGGCCATGCAAGCCCTGGAGCATGCCACG
ACTGATGACACACCGGATGTTCAGCAACACGAAGAGGAGGGGAACACTGA
ACCTAATCAGTAA
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