Ggra4744.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4744.t1
Unique NameGgra4744.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:121130..122707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4744Ggra4744Gracilaria gracilis GNS1m malegenetig00000065_pilon 121130..122707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4744.t1Ggra4744.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 121130..122707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4744.t1.stop1Ggra4744.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 121130..121132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4744.t1.CDS1Ggra4744.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 121130..121323 -
Ggra4744.t1.CDS2Ggra4744.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000065_pilon 122287..122305 -
Ggra4744.t1.CDS3Ggra4744.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000065_pilon 122394..122427 -
Ggra4744.t1.CDS4Ggra4744.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000065_pilon 122610..122707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4744.t1.exon1Ggra4744.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 121130..121323 -
Ggra4744.t1.exon2Ggra4744.t1.exon2Gracilaria gracilis GNS1m maleexontig00000065_pilon 122287..122305 -
Ggra4744.t1.exon3Ggra4744.t1.exon3Gracilaria gracilis GNS1m maleexontig00000065_pilon 122394..122427 -
Ggra4744.t1.exon4Ggra4744.t1.exon4Gracilaria gracilis GNS1m maleexontig00000065_pilon 122610..122707 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4744.t1.intron1Ggra4744.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000065_pilon 121324..122286 -
Ggra4744.t1.intron2Ggra4744.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000065_pilon 122306..122393 -
Ggra4744.t1.intron3Ggra4744.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000065_pilon 122428..122609 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4744.t1.start1Ggra4744.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 122705..122707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4744.t1 ID=Ggra4744.t1|Name=Ggra4744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=115bp
MIQELRTSKAFASKHEARNHDHSGLFKARSVWAVPIIFASTSPSPIVLIK
YEIDEQSFGSELRGRAGFRREYGCLLDVFWMVNCLQCMAREASVVLGAVK
EVGSGLGDGDPMAV*
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spliced messenger RNA

>Ggra4744.t1 ID=Ggra4744.t1|Name=Ggra4744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000065_pilon:121130..122707- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCAAGAGCTTCGCACGAGCAAGGCTTTCGCATCAAAACATGAAGC
TCGAAACCATGACCATTCTGGGCTATTTAAAGCTCGTTCTGTCTGGGCTG
TCCCGATCATTTTTGCCTCCACATCGCCAAGTCCCATTGTTTTGATCAAA
TACGAGATCGACGAGCAGAGCTTCGGTTCCGAGCTGCGCGGTCGCGCCGG
ATTTCGGCGCGAGTACGGGTGTCTTTTGGACGTTTTCTGGATGGTGAATT
GTCTTCAGTGCATGGCGAGGGAGGCGTCGGTGGTTCTGGGAGCGGTGAAA
GAGGTGGGGTCGGGCTTGGGGGATGGTGATCCAATGGCAGTCTAG
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protein sequence of Ggra4744.t1

>Ggra4744.t1 ID=Ggra4744.t1|Name=Ggra4744.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MIQELRTSKAFASKHEARNHDHSGLFKARSVWAVPIIFASTSPSPIVLIK
YEIDEQSFGSELRGRAGFRREYGCLLDVFWMVNCLQCMAREASVVLGAVK
EVGSGLGDGDPMAV*
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mRNA from alignment at tig00000065_pilon:121130..122707-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4744.t1 ID=Ggra4744.t1|Name=Ggra4744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000065_pilon:121130..122707- (Gracilaria gracilis GNS1m male)
ATGATCCAAGAGCTTCGCACGAGCAAGGCTTTCGCATCAAAACATGAAGC
TCGAAACCATGACCATTCTGGGCTATTTAAAGCTCGTTCTGTCTGGGCGT
GTGTATTACCTCATTCGAAGCTCATTATAAGGAACAGATCACAGGCACAT
GAAAAACCTTTGTGCGCTGGCTATAAAAACCAACTTCTTGGTCAAAATCG
GTGCTGAAAGCATCGTTTTTGAAACAGCAAGTTCCCCTATTTATGGAGAC
AACTACTCTGTAACGTACGCCATGTGGTAGTGTCCCGATCATTTTTGCCT
CCACATCGCCAAGTGTACGATTCCACACTTTTTCTCAGGTTGCCGCTTAC
CTTCCGCAAAGATATCTACTGTCATTCTGATCCTCTCGTATCTGTCTCTT
AGCCCATTGTTTTGATCAAATGTAACATCGTACCAGGGGATTTCTCCGGA
ATTTCTCCGAAATCCAGTTGACCTACATTCCCACATGTATGATTTGACAA
ACGGAAGTACAATAAAAAGTCGTCCACCTTTCGTTCCCACAATTCGAGCC
GTTTTCGTTTTCACAGGGTTCCACTTCCACCGGGTCGAAGACAATTTGTT
TTGCGATGCTTGTTTCGCCCCCTGATTTATTTCATGTCGTTGTTCCAAGC
AAGAATTGGGGAAAGGCAGCTTACCCGAGAATGACTGACATGGCAGCAAC
AACCAAAAAAGCCTTTACAGGGCTTGCTCTGTTTACAGATGATGATGATC
GTCACCACAGAAACGCCCTTTCTAGCAAAAAGGGTAAAGTTTGGCTCGAT
GGACTGATATGCGAACATCCGGCATCCTATATTAGAATAGATGTTTGTGC
TTGATAACATCGAATTCAGGTTTGTAGCAATTGGCTACTGCAATGATTTG
GCTGTGGGTTCGAAGAAAGAGCTGAGCAGAGAAATAGTAAAGATAGTGTG
AACAAACGGGCCCTTTAGTGCGCTACATTCTGGATGGCGTTGAATAGTGA
TTGTGAGGAAGTACATGTTGGCAGAGAACAGGTAGAATCAGAATCTTACA
AGAGAGTTAAATGTTTATAGAGGAAGGTCAATATAGAGCATTCTAAGTAC
TTGACGTAGCGCGAGCCTCTGAGAACGCATTGAAACAGTACATTCAAAAC
CAAACAGAGACACAGAACTTCAACCCACAGCATACGAAGGCGGTACAAAC
ACCGCAGAAGAACACACAGACGCAACCTGATCGCGCCTCAGCCGTTCGTC
ATGTGTGCCACAATAGTCTGCAGCCGAAGCATTCGAGTACGCAACGCAGC
CACGCGCGTTTTAAGAGACACATTTCGTTGTTCAACCATTTGTGCGTGAA
GGCGTTCGCGCTCATTCTGTGCCTTTTTTCGCAGACGAGATCGACGAGCA
GAGCTTCGGTTCCGAGCTGCGCGGTCGCGCCGGATTTCGGCGCGAGTACG
GGTGTCTTTTGGACGTTTTCTGGATGGTGAATTGTCTTCAGTGCATGGCG
AGGGAGGCGTCGGTGGTTCTGGGAGCGGTGAAAGAGGTGGGGTCGGGCTT
GGGGGATGGTGATCCAATGGCAGTCTAG
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Coding sequence (CDS) from alignment at tig00000065_pilon:121130..122707-

>Ggra4744.t1 ID=Ggra4744.t1|Name=Ggra4744.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000065_pilon:121130..122707- (Gracilaria gracilis GNS1m male)
ATGATCCAAGAGCTTCGCACGAGCAAGGCTTTCGCATCAAAACATGAAGC
TCGAAACCATGACCATTCTGGGCTATTTAAAGCTCGTTCTGTCTGGGCTG
TCCCGATCATTTTTGCCTCCACATCGCCAAGTCCCATTGTTTTGATCAAA
TACGAGATCGACGAGCAGAGCTTCGGTTCCGAGCTGCGCGGTCGCGCCGG
ATTTCGGCGCGAGTACGGGTGTCTTTTGGACGTTTTCTGGATGGTGAATT
GTCTTCAGTGCATGGCGAGGGAGGCGTCGGTGGTTCTGGGAGCGGTGAAA
GAGGTGGGGTCGGGCTTGGGGGATGGTGATCCAATGGCAGTCTAG
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