Ggra4742.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4742.t1
Unique NameGgra4742.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:117844..118356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1203602.HMPREF1527_00430
Preferred namerpsO
PFAMsRibosomal_S15
Max annot lvl84998|Coriobacteriia
KEGG koko:K02956
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue2.07e-17
EggNOG OGsCOG0184@1|root,COG0184@2|Bacteria,2IQA0@201174|Actinobacteria,4CW78@84998|Coriobacteriia
DescriptionForms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4742Ggra4742Gracilaria gracilis GNS1m malegenetig00000065_pilon 117844..118356 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4742.t1.stop1Ggra4742.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 117844..117846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4742.t1.CDS1Ggra4742.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 117844..118356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4742.t1.exon1Ggra4742.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 117844..118356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4742.t1.start1Ggra4742.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 118354..118356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4742.t1Ggra4742.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 117844..118356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4742.t1 ID=Ggra4742.t1|Name=Ggra4742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=171bp
MLRLSRLPWRLALASPSPRGVQARHATAPSASVLSHPVDASQSRAHESVA
AALSLSNASKGEQRRARKTQIIEQFGRDAQDTGATPVQIALLTDRIKDCT
QHVIAHKQDKMSRRRLVMMVAKRRRLMKYLLRTDSTLYMEVVTRLSLRPN
SVFPKDQPLGARKTPAPRLH*
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spliced messenger RNA

>Ggra4742.t1 ID=Ggra4742.t1|Name=Ggra4742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000065_pilon:117844..118356- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAGGCTGAGTCGGCTGCCGTGGCGCCTCGCGCTGGCGTCGCCGTC
GCCGCGTGGGGTGCAGGCGCGACACGCCACCGCGCCGTCCGCCAGCGTGC
TGTCGCACCCGGTGGACGCCTCGCAATCGCGCGCGCACGAATCGGTGGCG
GCCGCGCTATCGCTGAGCAACGCGTCGAAGGGCGAGCAGCGTCGCGCCAG
AAAAACGCAGATCATCGAGCAGTTCGGGCGCGACGCGCAGGACACGGGCG
CAACACCCGTTCAGATCGCGTTGTTGACGGACCGCATCAAGGATTGTACA
CAGCACGTGATTGCACACAAGCAGGATAAGATGAGTCGGCGACGGTTGGT
GATGATGGTTGCCAAGAGGCGACGATTGATGAAGTACCTGCTGCGCACCG
ACTCGACGTTGTACATGGAGGTGGTCACCAGACTGAGCTTGAGACCCAAC
TCGGTGTTCCCCAAGGATCAACCGCTGGGCGCGCGCAAGACGCCCGCGCC
TAGATTGCATTGA
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protein sequence of Ggra4742.t1

>Ggra4742.t1 ID=Ggra4742.t1|Name=Ggra4742.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=171bp
MLRLSRLPWRLALASPSPRGVQARHATAPSASVLSHPVDASQSRAHESVA
AALSLSNASKGEQRRARKTQIIEQFGRDAQDTGATPVQIALLTDRIKDCT
QHVIAHKQDKMSRRRLVMMVAKRRRLMKYLLRTDSTLYMEVVTRLSLRPN
SVFPKDQPLGARKTPAPRLH*
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mRNA from alignment at tig00000065_pilon:117844..118356-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4742.t1 ID=Ggra4742.t1|Name=Ggra4742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000065_pilon:117844..118356- (Gracilaria gracilis GNS1m male)
ATGCTGAGGCTGAGTCGGCTGCCGTGGCGCCTCGCGCTGGCGTCGCCGTC
GCCGCGTGGGGTGCAGGCGCGACACGCCACCGCGCCGTCCGCCAGCGTGC
TGTCGCACCCGGTGGACGCCTCGCAATCGCGCGCGCACGAATCGGTGGCG
GCCGCGCTATCGCTGAGCAACGCGTCGAAGGGCGAGCAGCGTCGCGCCAG
AAAAACGCAGATCATCGAGCAGTTCGGGCGCGACGCGCAGGACACGGGCG
CAACACCCGTTCAGATCGCGTTGTTGACGGACCGCATCAAGGATTGTACA
CAGCACGTGATTGCACACAAGCAGGATAAGATGAGTCGGCGACGGTTGGT
GATGATGGTTGCCAAGAGGCGACGATTGATGAAGTACCTGCTGCGCACCG
ACTCGACGTTGTACATGGAGGTGGTCACCAGACTGAGCTTGAGACCCAAC
TCGGTGTTCCCCAAGGATCAACCGCTGGGCGCGCGCAAGACGCCCGCGCC
TAGATTGCATTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:117844..118356-

>Ggra4742.t1 ID=Ggra4742.t1|Name=Ggra4742.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00000065_pilon:117844..118356- (Gracilaria gracilis GNS1m male)
ATGCTGAGGCTGAGTCGGCTGCCGTGGCGCCTCGCGCTGGCGTCGCCGTC
GCCGCGTGGGGTGCAGGCGCGACACGCCACCGCGCCGTCCGCCAGCGTGC
TGTCGCACCCGGTGGACGCCTCGCAATCGCGCGCGCACGAATCGGTGGCG
GCCGCGCTATCGCTGAGCAACGCGTCGAAGGGCGAGCAGCGTCGCGCCAG
AAAAACGCAGATCATCGAGCAGTTCGGGCGCGACGCGCAGGACACGGGCG
CAACACCCGTTCAGATCGCGTTGTTGACGGACCGCATCAAGGATTGTACA
CAGCACGTGATTGCACACAAGCAGGATAAGATGAGTCGGCGACGGTTGGT
GATGATGGTTGCCAAGAGGCGACGATTGATGAAGTACCTGCTGCGCACCG
ACTCGACGTTGTACATGGAGGTGGTCACCAGACTGAGCTTGAGACCCAAC
TCGGTGTTCCCCAAGGATCAACCGCTGGGCGCGCGCAAGACGCCCGCGCC
TAGATTGCATTGA
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