Ggra4734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4734.t1
Unique NameGgra4734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:99574..100788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO019CT
Preferred nameATAD1
PFAMsAAA
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K01509
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000003,GO:0000166,GO:0002090,GO:0002092,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0008104,GO:0008144,GO:0008150,GO:0009888,GO:0009893,GO:0009953,GO:0009987,GO:0010604,GO:0010646,GO:0010648,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019222,GO:0019867,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030554,GO:0031090,GO:0031323,GO:0031325,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0033036,GO:0033365,GO:0034613,GO:0035220,GO:0035222,GO:0035295,GO:0035639,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0044703,GO:0044743,GO:0045041,GO:0045184,GO:0045202,GO:0045211,GO:0045807,GO:0046907,GO:0048190,GO:0048232,GO:0048259,GO:0048260,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050804,GO:0050805,GO:0050877,GO:0050890,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051966,GO:0051967,GO:0055085,GO:0060255,GO:0060429,GO:0060627,GO:0065002,GO:0065007,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0097060,GO:0097159,GO:0097367,GO:0098588,GO:0098590,GO:0098794,GO:0098805,GO:0099177,GO:1901265,GO:1901363,GO:1990542
Evalue4.36e-98
EggNOG OGsCOG0464@1|root,KOG0737@2759|Eukaryota
EC3.6.1.3
DescriptionATP binding
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4734Ggra4734Gracilaria gracilis GNS1m malegenetig00000065_pilon 99574..100788 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4734.t1.stop1Ggra4734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 99574..99576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4734.t1.CDS1Ggra4734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 99574..100788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4734.t1.exon1Ggra4734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 99574..100788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4734.t1.start1Ggra4734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 100786..100788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4734.t1Ggra4734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 99574..100788 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4734.t1 ID=Ggra4734.t1|Name=Ggra4734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp
MASDEPSPDFADAAPSFWALLSRELLSAAFAVLGVYVSARVIKRVMDPNA
ESRERTRQRREAVLHRLLRTGVPNDALRYLSPAEEMLLHDLVFPEDISTS
FDSVGGLSYTKETLKELIVYPLLYPDVYQSGESSLLQPPKGILLYGPPGT
GKTMLAKALAKESGANFLALSPSSLLSKWLGDTEQLARAVFSLARRVQPT
IIFIDEIDGLFRERSSAEHEAHKNLKAEFMQLWDGLTTDDRYNQVVVLGA
TNRPYDVDPAILRRMPRPFEVALPNENERLEILKKVLEGVTLEEGFSFSS
IAGVTQGYSGSDLKELCRAAMMHPLREGVRGAARERACIGSPSTQKKLRP
LTLEDVLRARKEVNRTEQESAHYQERVLRESSVADGGQMDMLMRLLQAYS
ARPV*
back to top

spliced messenger RNA

>Ggra4734.t1 ID=Ggra4734.t1|Name=Ggra4734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000065_pilon:99574..100788- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGACGAGCCCTCGCCAGACTTCGCTGATGCCGCCCCCTCTTT
CTGGGCGCTTCTCTCCAGAGAATTGCTGTCAGCCGCCTTTGCTGTTCTCG
GCGTTTATGTCTCTGCGCGAGTGATTAAGCGTGTGATGGACCCCAACGCA
GAGTCCAGAGAACGCACGCGGCAGCGGAGGGAGGCCGTTCTTCACCGCCT
GTTACGTACTGGAGTGCCGAATGATGCATTGCGTTATCTTTCTCCAGCTG
AAGAAATGCTGCTCCATGATCTCGTGTTTCCCGAAGACATATCTACTTCG
TTTGACTCTGTCGGCGGCCTCTCATACACTAAAGAGACATTGAAGGAGCT
CATTGTGTACCCCCTTTTGTATCCAGATGTTTATCAAAGTGGAGAGAGCT
CTTTGCTTCAACCACCTAAGGGTATCCTGCTTTATGGTCCGCCAGGAACT
GGAAAGACCATGCTCGCAAAAGCACTTGCAAAGGAATCAGGTGCAAATTT
CCTTGCCCTATCACCGAGTTCTTTATTATCAAAGTGGCTTGGGGATACGG
AGCAGCTGGCCCGCGCTGTCTTCTCTCTCGCCCGTCGTGTTCAGCCTACA
ATAATTTTCATTGATGAGATAGATGGGTTGTTCAGAGAGCGATCTAGTGC
AGAGCATGAGGCACACAAAAACCTCAAAGCTGAATTCATGCAGTTATGGG
ATGGACTCACCACCGATGACCGTTACAATCAAGTTGTTGTACTTGGTGCT
ACTAACAGACCGTACGACGTCGACCCTGCGATTCTGCGAAGAATGCCAAG
ACCCTTCGAAGTTGCTCTACCCAACGAAAATGAGAGACTCGAAATTCTTA
AGAAGGTTCTGGAAGGAGTCACCCTTGAAGAAGGCTTTAGCTTTTCTTCT
ATAGCTGGGGTAACTCAGGGTTACTCTGGCTCCGACTTGAAAGAACTGTG
CCGTGCAGCAATGATGCACCCGCTACGCGAAGGTGTGAGAGGAGCTGCGA
GAGAACGTGCATGCATTGGTAGCCCTTCAACGCAGAAGAAATTGCGTCCA
CTTACGCTTGAAGACGTATTGCGAGCAAGGAAAGAAGTGAACCGAACCGA
GCAAGAAAGCGCTCATTATCAGGAGAGAGTGCTCAGGGAGTCCTCAGTAG
CCGACGGGGGTCAAATGGACATGCTCATGCGATTGCTTCAAGCATATAGT
GCTCGGCCTGTCTGA
back to top

protein sequence of Ggra4734.t1

>Ggra4734.t1 ID=Ggra4734.t1|Name=Ggra4734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=405bp
MASDEPSPDFADAAPSFWALLSRELLSAAFAVLGVYVSARVIKRVMDPNA
ESRERTRQRREAVLHRLLRTGVPNDALRYLSPAEEMLLHDLVFPEDISTS
FDSVGGLSYTKETLKELIVYPLLYPDVYQSGESSLLQPPKGILLYGPPGT
GKTMLAKALAKESGANFLALSPSSLLSKWLGDTEQLARAVFSLARRVQPT
IIFIDEIDGLFRERSSAEHEAHKNLKAEFMQLWDGLTTDDRYNQVVVLGA
TNRPYDVDPAILRRMPRPFEVALPNENERLEILKKVLEGVTLEEGFSFSS
IAGVTQGYSGSDLKELCRAAMMHPLREGVRGAARERACIGSPSTQKKLRP
LTLEDVLRARKEVNRTEQESAHYQERVLRESSVADGGQMDMLMRLLQAYS
ARPV*
back to top

mRNA from alignment at tig00000065_pilon:99574..100788-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4734.t1 ID=Ggra4734.t1|Name=Ggra4734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000065_pilon:99574..100788- (Gracilaria gracilis GNS1m male)
ATGGCTTCCGACGAGCCCTCGCCAGACTTCGCTGATGCCGCCCCCTCTTT
CTGGGCGCTTCTCTCCAGAGAATTGCTGTCAGCCGCCTTTGCTGTTCTCG
GCGTTTATGTCTCTGCGCGAGTGATTAAGCGTGTGATGGACCCCAACGCA
GAGTCCAGAGAACGCACGCGGCAGCGGAGGGAGGCCGTTCTTCACCGCCT
GTTACGTACTGGAGTGCCGAATGATGCATTGCGTTATCTTTCTCCAGCTG
AAGAAATGCTGCTCCATGATCTCGTGTTTCCCGAAGACATATCTACTTCG
TTTGACTCTGTCGGCGGCCTCTCATACACTAAAGAGACATTGAAGGAGCT
CATTGTGTACCCCCTTTTGTATCCAGATGTTTATCAAAGTGGAGAGAGCT
CTTTGCTTCAACCACCTAAGGGTATCCTGCTTTATGGTCCGCCAGGAACT
GGAAAGACCATGCTCGCAAAAGCACTTGCAAAGGAATCAGGTGCAAATTT
CCTTGCCCTATCACCGAGTTCTTTATTATCAAAGTGGCTTGGGGATACGG
AGCAGCTGGCCCGCGCTGTCTTCTCTCTCGCCCGTCGTGTTCAGCCTACA
ATAATTTTCATTGATGAGATAGATGGGTTGTTCAGAGAGCGATCTAGTGC
AGAGCATGAGGCACACAAAAACCTCAAAGCTGAATTCATGCAGTTATGGG
ATGGACTCACCACCGATGACCGTTACAATCAAGTTGTTGTACTTGGTGCT
ACTAACAGACCGTACGACGTCGACCCTGCGATTCTGCGAAGAATGCCAAG
ACCCTTCGAAGTTGCTCTACCCAACGAAAATGAGAGACTCGAAATTCTTA
AGAAGGTTCTGGAAGGAGTCACCCTTGAAGAAGGCTTTAGCTTTTCTTCT
ATAGCTGGGGTAACTCAGGGTTACTCTGGCTCCGACTTGAAAGAACTGTG
CCGTGCAGCAATGATGCACCCGCTACGCGAAGGTGTGAGAGGAGCTGCGA
GAGAACGTGCATGCATTGGTAGCCCTTCAACGCAGAAGAAATTGCGTCCA
CTTACGCTTGAAGACGTATTGCGAGCAAGGAAAGAAGTGAACCGAACCGA
GCAAGAAAGCGCTCATTATCAGGAGAGAGTGCTCAGGGAGTCCTCAGTAG
CCGACGGGGGTCAAATGGACATGCTCATGCGATTGCTTCAAGCATATAGT
GCTCGGCCTGTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000065_pilon:99574..100788-

>Ggra4734.t1 ID=Ggra4734.t1|Name=Ggra4734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00000065_pilon:99574..100788- (Gracilaria gracilis GNS1m male)
ATGGCTTCCGACGAGCCCTCGCCAGACTTCGCTGATGCCGCCCCCTCTTT
CTGGGCGCTTCTCTCCAGAGAATTGCTGTCAGCCGCCTTTGCTGTTCTCG
GCGTTTATGTCTCTGCGCGAGTGATTAAGCGTGTGATGGACCCCAACGCA
GAGTCCAGAGAACGCACGCGGCAGCGGAGGGAGGCCGTTCTTCACCGCCT
GTTACGTACTGGAGTGCCGAATGATGCATTGCGTTATCTTTCTCCAGCTG
AAGAAATGCTGCTCCATGATCTCGTGTTTCCCGAAGACATATCTACTTCG
TTTGACTCTGTCGGCGGCCTCTCATACACTAAAGAGACATTGAAGGAGCT
CATTGTGTACCCCCTTTTGTATCCAGATGTTTATCAAAGTGGAGAGAGCT
CTTTGCTTCAACCACCTAAGGGTATCCTGCTTTATGGTCCGCCAGGAACT
GGAAAGACCATGCTCGCAAAAGCACTTGCAAAGGAATCAGGTGCAAATTT
CCTTGCCCTATCACCGAGTTCTTTATTATCAAAGTGGCTTGGGGATACGG
AGCAGCTGGCCCGCGCTGTCTTCTCTCTCGCCCGTCGTGTTCAGCCTACA
ATAATTTTCATTGATGAGATAGATGGGTTGTTCAGAGAGCGATCTAGTGC
AGAGCATGAGGCACACAAAAACCTCAAAGCTGAATTCATGCAGTTATGGG
ATGGACTCACCACCGATGACCGTTACAATCAAGTTGTTGTACTTGGTGCT
ACTAACAGACCGTACGACGTCGACCCTGCGATTCTGCGAAGAATGCCAAG
ACCCTTCGAAGTTGCTCTACCCAACGAAAATGAGAGACTCGAAATTCTTA
AGAAGGTTCTGGAAGGAGTCACCCTTGAAGAAGGCTTTAGCTTTTCTTCT
ATAGCTGGGGTAACTCAGGGTTACTCTGGCTCCGACTTGAAAGAACTGTG
CCGTGCAGCAATGATGCACCCGCTACGCGAAGGTGTGAGAGGAGCTGCGA
GAGAACGTGCATGCATTGGTAGCCCTTCAACGCAGAAGAAATTGCGTCCA
CTTACGCTTGAAGACGTATTGCGAGCAAGGAAAGAAGTGAACCGAACCGA
GCAAGAAAGCGCTCATTATCAGGAGAGAGTGCTCAGGGAGTCCTCAGTAG
CCGACGGGGGTCAAATGGACATGCTCATGCGATTGCTTCAAGCATATAGT
GCTCGGCCTGTCTGA
back to top