Ggra4729.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4729.t1
Unique Name	Ggra4729.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000065_pilon	contig	tig00000065_pilon:85018..86658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705872.1
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04403,ko:K14803,ko:K17500
KEGG Pathway	ko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG Module	M00686
Evalue	3.88e-70
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4729	Ggra4729	Gracilaria gracilis GNS1m male	gene	tig00000065_pilon 85018..86658 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4729.t1.start1	Ggra4729.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000065_pilon 85018..85020 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4729.t1.CDS1	Ggra4729.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000065_pilon 85018..86658 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4729.t1.exon1	Ggra4729.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000065_pilon 85018..86658 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4729.t1.stop1	Ggra4729.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000065_pilon 86656..86658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4729.t1	Ggra4729.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000065_pilon 85018..86658 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000065_pilon:85018..86658+
coding sequence from alignment at tig00000065_pilon:85018..86658+

mRNA sequence

>Ggra4729.t1 ID=Ggra4729.t1|Name=Ggra4729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MFRRIRARSRARRAKHPSPTRSPDAPPAAHQLLMHSQQPLPHPPAIELPR
RSRTPSDSTPLIMRSPSLPHSMSQSEVHAVRARTDIGTANDTSARVYPDT
IHRPAPVHPPDAMSIADHNRRLSLDGELPPNAIRPDDPNHELEEETLREG
LIDFIPDAFTKPIDVSACSKAGWEPLRDSAIPVAPMHTVEVRKENQDAFC
ALAPFVIVPTSPSDTKGQRQIFLGVFDGHGAEGRPIAHYARDFIVATARE
AAPSLAYAHSHKQYPVPAQLHRDRLNVLRAAFSRAERALTESDPLIDHVF
SGTTAVVSWMFGRDVYTAWTGDSRCVIGRVWSGEHGRVRFKAIDLSHDQK
PTRVDEKRRVRAAGGRIARWHRNSGPLRVWLPRDWTPGLAMTRSIGDTVL
SEYGVSPVPEVSFTTLGAHDSFIVLASDGVWEFMTSQEVVEFIGRMRREG
RSANDAAEALVREAVRRWRRNEVVVDDTTAVVVWLALEDDGEDDKKSSDS
PLSRHRRMFSMARAKVGKHHPPGVHIVCDDGHLAEFHCKNDLLQGM*

spliced messenger RNA

>Ggra4729.t1 ID=Ggra4729.t1|Name=Ggra4729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000065_pilon:85018..86658+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCCGCATCCGCGCACGCAGCCGCGCCCGCCGCGCAAAGCACCC
GTCGCCCACCCGCTCTCCCGACGCGCCGCCCGCCGCGCACCAGCTGCTCA
TGCACTCGCAGCAACCGCTACCCCACCCGCCCGCCATCGAGCTTCCGCGC
CGCTCGCGCACCCCGTCCGACTCCACGCCGCTCATCATGCGCTCGCCCTC
GCTGCCGCACTCCATGTCGCAGTCGGAGGTGCACGCCGTGCGCGCGCGCA
CCGACATCGGCACCGCCAACGACACCTCCGCGCGTGTGTACCCGGACACC
ATACACCGTCCGGCGCCCGTGCACCCGCCCGACGCCATGTCCATAGCCGA
CCACAACCGCCGCCTCTCGCTGGACGGTGAGCTGCCGCCGAATGCCATCC
GCCCCGATGACCCCAACCACGAGCTTGAGGAGGAGACGTTGCGCGAGGGT
TTGATCGACTTCATTCCGGACGCTTTCACCAAGCCCATCGACGTGTCCGC
CTGCTCCAAGGCCGGTTGGGAACCCTTGCGCGACTCGGCCATACCCGTGG
CCCCCATGCACACCGTCGAGGTCCGGAAGGAGAATCAGGACGCCTTTTGT
GCCTTGGCCCCGTTCGTGATTGTGCCCACGTCGCCCAGTGATACCAAGGG
CCAGCGTCAAATCTTTCTCGGAGTGTTTGACGGACACGGTGCGGAGGGAC
GCCCAATAGCTCATTATGCTCGCGATTTTATCGTCGCTACAGCCCGTGAG
GCCGCCCCTTCGCTCGCGTACGCCCACTCCCACAAACAATACCCGGTCCC
TGCTCAGCTACATCGCGACCGTCTCAACGTGCTCCGCGCCGCTTTCTCGC
GCGCGGAGCGCGCGCTTACTGAATCGGACCCGCTCATTGACCACGTGTTT
TCCGGCACCACTGCCGTCGTGTCGTGGATGTTTGGGCGCGATGTGTACAC
CGCGTGGACTGGAGACTCGAGGTGCGTGATTGGAAGAGTGTGGTCCGGCG
AACATGGACGTGTTCGCTTCAAGGCCATAGATCTCAGTCATGACCAAAAA
CCCACCCGTGTGGACGAGAAACGGCGCGTGCGCGCCGCTGGCGGGCGAAT
TGCTAGATGGCACAGAAATTCGGGGCCGTTGCGTGTGTGGTTGCCGCGTG
ACTGGACGCCCGGACTGGCTATGACGCGCAGCATTGGTGATACCGTGCTG
AGCGAGTATGGTGTGAGCCCGGTTCCGGAGGTTTCGTTCACAACTTTGGG
GGCACATGATAGCTTTATTGTACTTGCAAGCGATGGGGTGTGGGAGTTTA
TGACCAGTCAGGAAGTGGTGGAGTTCATCGGACGAATGCGGAGAGAAGGG
CGAAGTGCTAATGACGCTGCAGAGGCTCTTGTACGGGAGGCTGTACGAAG
GTGGCGGCGCAACGAGGTCGTTGTGGATGACACAACGGCTGTAGTAGTAT
GGCTGGCACTGGAAGATGACGGGGAGGATGATAAGAAATCAAGCGACTCG
CCGTTGTCAAGACATAGAAGAATGTTCTCGATGGCGAGAGCAAAGGTCGG
GAAACATCATCCGCCCGGTGTGCATATTGTGTGCGATGACGGACACCTCG
CCGAGTTTCATTGTAAGAATGATCTTTTGCAAGGCATGTGA

protein sequence of Ggra4729.t1

>Ggra4729.t1 ID=Ggra4729.t1|Name=Ggra4729.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MFRRIRARSRARRAKHPSPTRSPDAPPAAHQLLMHSQQPLPHPPAIELPR
RSRTPSDSTPLIMRSPSLPHSMSQSEVHAVRARTDIGTANDTSARVYPDT
IHRPAPVHPPDAMSIADHNRRLSLDGELPPNAIRPDDPNHELEEETLREG
LIDFIPDAFTKPIDVSACSKAGWEPLRDSAIPVAPMHTVEVRKENQDAFC
ALAPFVIVPTSPSDTKGQRQIFLGVFDGHGAEGRPIAHYARDFIVATARE
AAPSLAYAHSHKQYPVPAQLHRDRLNVLRAAFSRAERALTESDPLIDHVF
SGTTAVVSWMFGRDVYTAWTGDSRCVIGRVWSGEHGRVRFKAIDLSHDQK
PTRVDEKRRVRAAGGRIARWHRNSGPLRVWLPRDWTPGLAMTRSIGDTVL
SEYGVSPVPEVSFTTLGAHDSFIVLASDGVWEFMTSQEVVEFIGRMRREG
RSANDAAEALVREAVRRWRRNEVVVDDTTAVVVWLALEDDGEDDKKSSDS
PLSRHRRMFSMARAKVGKHHPPGVHIVCDDGHLAEFHCKNDLLQGM*

mRNA from alignment at tig00000065_pilon:85018..86658+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4729.t1 ID=Ggra4729.t1|Name=Ggra4729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000065_pilon:85018..86658+ (Gracilaria gracilis GNS1m male)
ATGTTCCGCCGCATCCGCGCACGCAGCCGCGCCCGCCGCGCAAAGCACCC
GTCGCCCACCCGCTCTCCCGACGCGCCGCCCGCCGCGCACCAGCTGCTCA
TGCACTCGCAGCAACCGCTACCCCACCCGCCCGCCATCGAGCTTCCGCGC
CGCTCGCGCACCCCGTCCGACTCCACGCCGCTCATCATGCGCTCGCCCTC
GCTGCCGCACTCCATGTCGCAGTCGGAGGTGCACGCCGTGCGCGCGCGCA
CCGACATCGGCACCGCCAACGACACCTCCGCGCGTGTGTACCCGGACACC
ATACACCGTCCGGCGCCCGTGCACCCGCCCGACGCCATGTCCATAGCCGA
CCACAACCGCCGCCTCTCGCTGGACGGTGAGCTGCCGCCGAATGCCATCC
GCCCCGATGACCCCAACCACGAGCTTGAGGAGGAGACGTTGCGCGAGGGT
TTGATCGACTTCATTCCGGACGCTTTCACCAAGCCCATCGACGTGTCCGC
CTGCTCCAAGGCCGGTTGGGAACCCTTGCGCGACTCGGCCATACCCGTGG
CCCCCATGCACACCGTCGAGGTCCGGAAGGAGAATCAGGACGCCTTTTGT
GCCTTGGCCCCGTTCGTGATTGTGCCCACGTCGCCCAGTGATACCAAGGG
CCAGCGTCAAATCTTTCTCGGAGTGTTTGACGGACACGGTGCGGAGGGAC
GCCCAATAGCTCATTATGCTCGCGATTTTATCGTCGCTACAGCCCGTGAG
GCCGCCCCTTCGCTCGCGTACGCCCACTCCCACAAACAATACCCGGTCCC
TGCTCAGCTACATCGCGACCGTCTCAACGTGCTCCGCGCCGCTTTCTCGC
GCGCGGAGCGCGCGCTTACTGAATCGGACCCGCTCATTGACCACGTGTTT
TCCGGCACCACTGCCGTCGTGTCGTGGATGTTTGGGCGCGATGTGTACAC
CGCGTGGACTGGAGACTCGAGGTGCGTGATTGGAAGAGTGTGGTCCGGCG
AACATGGACGTGTTCGCTTCAAGGCCATAGATCTCAGTCATGACCAAAAA
CCCACCCGTGTGGACGAGAAACGGCGCGTGCGCGCCGCTGGCGGGCGAAT
TGCTAGATGGCACAGAAATTCGGGGCCGTTGCGTGTGTGGTTGCCGCGTG
ACTGGACGCCCGGACTGGCTATGACGCGCAGCATTGGTGATACCGTGCTG
AGCGAGTATGGTGTGAGCCCGGTTCCGGAGGTTTCGTTCACAACTTTGGG
GGCACATGATAGCTTTATTGTACTTGCAAGCGATGGGGTGTGGGAGTTTA
TGACCAGTCAGGAAGTGGTGGAGTTCATCGGACGAATGCGGAGAGAAGGG
CGAAGTGCTAATGACGCTGCAGAGGCTCTTGTACGGGAGGCTGTACGAAG
GTGGCGGCGCAACGAGGTCGTTGTGGATGACACAACGGCTGTAGTAGTAT
GGCTGGCACTGGAAGATGACGGGGAGGATGATAAGAAATCAAGCGACTCG
CCGTTGTCAAGACATAGAAGAATGTTCTCGATGGCGAGAGCAAAGGTCGG
GAAACATCATCCGCCCGGTGTGCATATTGTGTGCGATGACGGACACCTCG
CCGAGTTTCATTGTAAGAATGATCTTTTGCAAGGCATGTGA

Coding sequence (CDS) from alignment at tig00000065_pilon:85018..86658+

>Ggra4729.t1 ID=Ggra4729.t1|Name=Ggra4729.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000065_pilon:85018..86658+ (Gracilaria gracilis GNS1m male)
ATGTTCCGCCGCATCCGCGCACGCAGCCGCGCCCGCCGCGCAAAGCACCC
GTCGCCCACCCGCTCTCCCGACGCGCCGCCCGCCGCGCACCAGCTGCTCA
TGCACTCGCAGCAACCGCTACCCCACCCGCCCGCCATCGAGCTTCCGCGC
CGCTCGCGCACCCCGTCCGACTCCACGCCGCTCATCATGCGCTCGCCCTC
GCTGCCGCACTCCATGTCGCAGTCGGAGGTGCACGCCGTGCGCGCGCGCA
CCGACATCGGCACCGCCAACGACACCTCCGCGCGTGTGTACCCGGACACC
ATACACCGTCCGGCGCCCGTGCACCCGCCCGACGCCATGTCCATAGCCGA
CCACAACCGCCGCCTCTCGCTGGACGGTGAGCTGCCGCCGAATGCCATCC
GCCCCGATGACCCCAACCACGAGCTTGAGGAGGAGACGTTGCGCGAGGGT
TTGATCGACTTCATTCCGGACGCTTTCACCAAGCCCATCGACGTGTCCGC
CTGCTCCAAGGCCGGTTGGGAACCCTTGCGCGACTCGGCCATACCCGTGG
CCCCCATGCACACCGTCGAGGTCCGGAAGGAGAATCAGGACGCCTTTTGT
GCCTTGGCCCCGTTCGTGATTGTGCCCACGTCGCCCAGTGATACCAAGGG
CCAGCGTCAAATCTTTCTCGGAGTGTTTGACGGACACGGTGCGGAGGGAC
GCCCAATAGCTCATTATGCTCGCGATTTTATCGTCGCTACAGCCCGTGAG
GCCGCCCCTTCGCTCGCGTACGCCCACTCCCACAAACAATACCCGGTCCC
TGCTCAGCTACATCGCGACCGTCTCAACGTGCTCCGCGCCGCTTTCTCGC
GCGCGGAGCGCGCGCTTACTGAATCGGACCCGCTCATTGACCACGTGTTT
TCCGGCACCACTGCCGTCGTGTCGTGGATGTTTGGGCGCGATGTGTACAC
CGCGTGGACTGGAGACTCGAGGTGCGTGATTGGAAGAGTGTGGTCCGGCG
AACATGGACGTGTTCGCTTCAAGGCCATAGATCTCAGTCATGACCAAAAA
CCCACCCGTGTGGACGAGAAACGGCGCGTGCGCGCCGCTGGCGGGCGAAT
TGCTAGATGGCACAGAAATTCGGGGCCGTTGCGTGTGTGGTTGCCGCGTG
ACTGGACGCCCGGACTGGCTATGACGCGCAGCATTGGTGATACCGTGCTG
AGCGAGTATGGTGTGAGCCCGGTTCCGGAGGTTTCGTTCACAACTTTGGG
GGCACATGATAGCTTTATTGTACTTGCAAGCGATGGGGTGTGGGAGTTTA
TGACCAGTCAGGAAGTGGTGGAGTTCATCGGACGAATGCGGAGAGAAGGG
CGAAGTGCTAATGACGCTGCAGAGGCTCTTGTACGGGAGGCTGTACGAAG
GTGGCGGCGCAACGAGGTCGTTGTGGATGACACAACGGCTGTAGTAGTAT
GGCTGGCACTGGAAGATGACGGGGAGGATGATAAGAAATCAAGCGACTCG
CCGTTGTCAAGACATAGAAGAATGTTCTCGATGGCGAGAGCAAAGGTCGG
GAAACATCATCCGCCCGGTGTGCATATTGTGTGCGATGACGGACACCTCG
CCGAGTTTCATTGTAAGAATGATCTTTTGCAAGGCATGTGA