Ggra4727.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4727.t1
Unique NameGgra4727.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:78909..79970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703528.1
Preferred nameVRG4
PFAMsEamA,TPT,UAA
Max annot lvl2759|Eukaryota
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
Evalue7.56e-55
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
EC2.1.1.310
Descriptionnucleotide-sugar transmembrane transporter activity
COG categoryGOU
BRITEko00000,ko01000,ko02000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4727Ggra4727Gracilaria gracilis GNS1m malegenetig00000065_pilon 78909..79970 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4727.t1.start1Ggra4727.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 78909..78911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4727.t1.CDS1Ggra4727.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 78909..79970 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4727.t1.exon1Ggra4727.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 78909..79970 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4727.t1.stop1Ggra4727.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 79968..79970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4727.t1Ggra4727.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 78909..79970 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4727.t1 ID=Ggra4727.t1|Name=Ggra4727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MTVRSRSSSATGLHPRAVNACVSYAVASTLVTIMNKVVFSHAHFHFPWFT
LAFQNVISILVILASRKLGYTTAGSLSRPLVRSMPIPIMYFVFFIFTNAQ
SLRYVNLPVLTVWKSLGPMFVTLFERFYFGDRFSVRVYLSMSLIVLSAFV
TAINDLEYSAIGYAWAALNVFSNVAYLASLRIYLRDPDVSPLDKTFHSNL
LSIVPILPMALLSGEFPGVVSALSNRSLAFQASYISSGVLTTAVCASAFW
TISVTNGSTLSFIGGFNKVPIILLSLVLFDMKISAAGWIGVTLGVVAGVV
FVQAKTTLLREKGSDSLYKEKMCHEDELQFVVKTASVEAVLESPHSIQTI
PNR*
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spliced messenger RNA

>Ggra4727.t1 ID=Ggra4727.t1|Name=Ggra4727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000065_pilon:78909..79970+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGCGTTCTCGCAGTTCGTCGGCCACGGGCTTGCATCCGCGTGC
CGTGAACGCGTGCGTGTCGTATGCCGTCGCGTCGACGTTAGTTACTATTA
TGAACAAGGTGGTCTTCTCGCACGCTCACTTTCATTTTCCGTGGTTCACA
CTGGCCTTTCAGAATGTCATATCCATTCTTGTTATTCTGGCCTCGCGCAA
ATTAGGCTACACCACCGCCGGCTCCTTGTCACGCCCCCTTGTTCGTAGCA
TGCCCATCCCCATCATGTACTTTGTGTTCTTCATCTTCACCAATGCGCAG
TCGTTGAGGTATGTCAATCTCCCAGTGCTCACTGTATGGAAATCCTTGGG
CCCGATGTTTGTCACGCTTTTTGAACGCTTTTACTTTGGTGATCGTTTCT
CGGTCAGGGTTTACCTTTCCATGTCGCTTATCGTTCTCTCTGCGTTCGTG
ACAGCCATTAATGATCTCGAGTATTCTGCCATTGGATATGCCTGGGCTGC
GCTTAATGTTTTTTCGAACGTAGCGTACCTCGCTTCTTTGCGCATTTACC
TTCGAGACCCCGATGTTTCTCCACTCGATAAGACTTTCCATTCTAATTTG
CTTTCCATCGTCCCCATCTTACCAATGGCTTTACTCTCCGGTGAATTCCC
TGGCGTAGTATCGGCGTTGAGCAACCGATCTCTAGCGTTTCAAGCATCGT
ATATATCATCGGGTGTGCTTACAACAGCAGTTTGCGCATCTGCGTTTTGG
ACTATATCTGTCACCAACGGGAGCACACTTTCCTTCATCGGAGGCTTCAA
CAAAGTCCCTATTATTCTGTTATCACTTGTTTTGTTTGATATGAAAATCT
CAGCCGCGGGCTGGATTGGGGTCACACTCGGCGTGGTAGCCGGCGTCGTT
TTCGTGCAGGCCAAAACAACATTGCTGCGCGAGAAGGGCTCAGATTCACT
GTACAAGGAGAAGATGTGTCACGAAGATGAGCTGCAGTTCGTCGTCAAGA
CAGCATCCGTCGAGGCCGTGTTGGAGAGTCCGCACAGCATTCAAACTATT
CCCAACCGATAG
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protein sequence of Ggra4727.t1

>Ggra4727.t1 ID=Ggra4727.t1|Name=Ggra4727.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MTVRSRSSSATGLHPRAVNACVSYAVASTLVTIMNKVVFSHAHFHFPWFT
LAFQNVISILVILASRKLGYTTAGSLSRPLVRSMPIPIMYFVFFIFTNAQ
SLRYVNLPVLTVWKSLGPMFVTLFERFYFGDRFSVRVYLSMSLIVLSAFV
TAINDLEYSAIGYAWAALNVFSNVAYLASLRIYLRDPDVSPLDKTFHSNL
LSIVPILPMALLSGEFPGVVSALSNRSLAFQASYISSGVLTTAVCASAFW
TISVTNGSTLSFIGGFNKVPIILLSLVLFDMKISAAGWIGVTLGVVAGVV
FVQAKTTLLREKGSDSLYKEKMCHEDELQFVVKTASVEAVLESPHSIQTI
PNR*
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mRNA from alignment at tig00000065_pilon:78909..79970+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4727.t1 ID=Ggra4727.t1|Name=Ggra4727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000065_pilon:78909..79970+ (Gracilaria gracilis GNS1m male)
ATGACCGTGCGTTCTCGCAGTTCGTCGGCCACGGGCTTGCATCCGCGTGC
CGTGAACGCGTGCGTGTCGTATGCCGTCGCGTCGACGTTAGTTACTATTA
TGAACAAGGTGGTCTTCTCGCACGCTCACTTTCATTTTCCGTGGTTCACA
CTGGCCTTTCAGAATGTCATATCCATTCTTGTTATTCTGGCCTCGCGCAA
ATTAGGCTACACCACCGCCGGCTCCTTGTCACGCCCCCTTGTTCGTAGCA
TGCCCATCCCCATCATGTACTTTGTGTTCTTCATCTTCACCAATGCGCAG
TCGTTGAGGTATGTCAATCTCCCAGTGCTCACTGTATGGAAATCCTTGGG
CCCGATGTTTGTCACGCTTTTTGAACGCTTTTACTTTGGTGATCGTTTCT
CGGTCAGGGTTTACCTTTCCATGTCGCTTATCGTTCTCTCTGCGTTCGTG
ACAGCCATTAATGATCTCGAGTATTCTGCCATTGGATATGCCTGGGCTGC
GCTTAATGTTTTTTCGAACGTAGCGTACCTCGCTTCTTTGCGCATTTACC
TTCGAGACCCCGATGTTTCTCCACTCGATAAGACTTTCCATTCTAATTTG
CTTTCCATCGTCCCCATCTTACCAATGGCTTTACTCTCCGGTGAATTCCC
TGGCGTAGTATCGGCGTTGAGCAACCGATCTCTAGCGTTTCAAGCATCGT
ATATATCATCGGGTGTGCTTACAACAGCAGTTTGCGCATCTGCGTTTTGG
ACTATATCTGTCACCAACGGGAGCACACTTTCCTTCATCGGAGGCTTCAA
CAAAGTCCCTATTATTCTGTTATCACTTGTTTTGTTTGATATGAAAATCT
CAGCCGCGGGCTGGATTGGGGTCACACTCGGCGTGGTAGCCGGCGTCGTT
TTCGTGCAGGCCAAAACAACATTGCTGCGCGAGAAGGGCTCAGATTCACT
GTACAAGGAGAAGATGTGTCACGAAGATGAGCTGCAGTTCGTCGTCAAGA
CAGCATCCGTCGAGGCCGTGTTGGAGAGTCCGCACAGCATTCAAACTATT
CCCAACCGATAG
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Coding sequence (CDS) from alignment at tig00000065_pilon:78909..79970+

>Ggra4727.t1 ID=Ggra4727.t1|Name=Ggra4727.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000065_pilon:78909..79970+ (Gracilaria gracilis GNS1m male)
ATGACCGTGCGTTCTCGCAGTTCGTCGGCCACGGGCTTGCATCCGCGTGC
CGTGAACGCGTGCGTGTCGTATGCCGTCGCGTCGACGTTAGTTACTATTA
TGAACAAGGTGGTCTTCTCGCACGCTCACTTTCATTTTCCGTGGTTCACA
CTGGCCTTTCAGAATGTCATATCCATTCTTGTTATTCTGGCCTCGCGCAA
ATTAGGCTACACCACCGCCGGCTCCTTGTCACGCCCCCTTGTTCGTAGCA
TGCCCATCCCCATCATGTACTTTGTGTTCTTCATCTTCACCAATGCGCAG
TCGTTGAGGTATGTCAATCTCCCAGTGCTCACTGTATGGAAATCCTTGGG
CCCGATGTTTGTCACGCTTTTTGAACGCTTTTACTTTGGTGATCGTTTCT
CGGTCAGGGTTTACCTTTCCATGTCGCTTATCGTTCTCTCTGCGTTCGTG
ACAGCCATTAATGATCTCGAGTATTCTGCCATTGGATATGCCTGGGCTGC
GCTTAATGTTTTTTCGAACGTAGCGTACCTCGCTTCTTTGCGCATTTACC
TTCGAGACCCCGATGTTTCTCCACTCGATAAGACTTTCCATTCTAATTTG
CTTTCCATCGTCCCCATCTTACCAATGGCTTTACTCTCCGGTGAATTCCC
TGGCGTAGTATCGGCGTTGAGCAACCGATCTCTAGCGTTTCAAGCATCGT
ATATATCATCGGGTGTGCTTACAACAGCAGTTTGCGCATCTGCGTTTTGG
ACTATATCTGTCACCAACGGGAGCACACTTTCCTTCATCGGAGGCTTCAA
CAAAGTCCCTATTATTCTGTTATCACTTGTTTTGTTTGATATGAAAATCT
CAGCCGCGGGCTGGATTGGGGTCACACTCGGCGTGGTAGCCGGCGTCGTT
TTCGTGCAGGCCAAAACAACATTGCTGCGCGAGAAGGGCTCAGATTCACT
GTACAAGGAGAAGATGTGTCACGAAGATGAGCTGCAGTTCGTCGTCAAGA
CAGCATCCGTCGAGGCCGTGTTGGAGAGTCCGCACAGCATTCAAACTATT
CCCAACCGATAG
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