Ggra4725.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4725.t1
Unique NameGgra4725.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:76360..76914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.AC197705.4_FGP004
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue3.03e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37VC7@33090|Viridiplantae,3GJCJ@35493|Streptophyta,3M0YM@4447|Liliopsida,3IHY6@38820|Poales
DescriptionRING-like zinc finger
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4725Ggra4725Gracilaria gracilis GNS1m malegenetig00000065_pilon 76360..76914 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4725.t1.start1Ggra4725.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 76360..76362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4725.t1.CDS1Ggra4725.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 76360..76914 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4725.t1.exon1Ggra4725.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 76360..76914 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4725.t1.stop1Ggra4725.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 76912..76914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4725.t1Ggra4725.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 76360..76914 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4725.t1 ID=Ggra4725.t1|Name=Ggra4725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MSRSAPPRRAPLWARLLPQVAPTPLSAVLPLLAAPLATMGMAAVSSAHDL
TTLHEPPASRSFVFGSSLRACAICLEEYIPGDRLRMLEPCGHCFHQACID
GWLGVPECLRRDARVCPVCNVVLGAPFHREQAEVRDEQLNTRTPWPSVQL
IDLSPHQSWVEWFADLLKLYYPHNNSSASSASSP*
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spliced messenger RNA

>Ggra4725.t1 ID=Ggra4725.t1|Name=Ggra4725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000065_pilon:76360..76914+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGCTCCGCGCCCCCCCGTCGCGCGCCGCTATGGGCGCGTCTTCT
GCCGCAGGTGGCGCCCACGCCGCTCTCAGCCGTGCTGCCGCTGCTGGCAG
CGCCGCTGGCCACGATGGGCATGGCGGCCGTGTCGTCGGCGCACGACCTC
ACCACGCTGCACGAGCCGCCCGCGTCGCGCTCGTTCGTGTTCGGCTCGTC
GCTCCGCGCGTGCGCCATCTGTCTGGAGGAGTACATTCCCGGTGATCGAC
TACGCATGTTAGAGCCGTGTGGACACTGCTTTCACCAGGCTTGCATTGAC
GGCTGGCTTGGTGTGCCCGAGTGTCTCAGGCGTGACGCGCGAGTGTGTCC
TGTGTGCAACGTCGTGTTGGGTGCGCCGTTTCATCGAGAGCAGGCTGAGG
TGCGCGATGAGCAGCTCAACACACGCACGCCGTGGCCGAGCGTGCAGTTG
ATTGACCTCAGTCCGCATCAGAGCTGGGTGGAATGGTTCGCAGACCTGCT
CAAGCTGTACTACCCGCACAACAATTCGTCCGCTTCGAGCGCGTCGTCGC
CATGA
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protein sequence of Ggra4725.t1

>Ggra4725.t1 ID=Ggra4725.t1|Name=Ggra4725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MSRSAPPRRAPLWARLLPQVAPTPLSAVLPLLAAPLATMGMAAVSSAHDL
TTLHEPPASRSFVFGSSLRACAICLEEYIPGDRLRMLEPCGHCFHQACID
GWLGVPECLRRDARVCPVCNVVLGAPFHREQAEVRDEQLNTRTPWPSVQL
IDLSPHQSWVEWFADLLKLYYPHNNSSASSASSP*
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mRNA from alignment at tig00000065_pilon:76360..76914+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4725.t1 ID=Ggra4725.t1|Name=Ggra4725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000065_pilon:76360..76914+ (Gracilaria gracilis GNS1m male)
ATGAGCCGCTCCGCGCCCCCCCGTCGCGCGCCGCTATGGGCGCGTCTTCT
GCCGCAGGTGGCGCCCACGCCGCTCTCAGCCGTGCTGCCGCTGCTGGCAG
CGCCGCTGGCCACGATGGGCATGGCGGCCGTGTCGTCGGCGCACGACCTC
ACCACGCTGCACGAGCCGCCCGCGTCGCGCTCGTTCGTGTTCGGCTCGTC
GCTCCGCGCGTGCGCCATCTGTCTGGAGGAGTACATTCCCGGTGATCGAC
TACGCATGTTAGAGCCGTGTGGACACTGCTTTCACCAGGCTTGCATTGAC
GGCTGGCTTGGTGTGCCCGAGTGTCTCAGGCGTGACGCGCGAGTGTGTCC
TGTGTGCAACGTCGTGTTGGGTGCGCCGTTTCATCGAGAGCAGGCTGAGG
TGCGCGATGAGCAGCTCAACACACGCACGCCGTGGCCGAGCGTGCAGTTG
ATTGACCTCAGTCCGCATCAGAGCTGGGTGGAATGGTTCGCAGACCTGCT
CAAGCTGTACTACCCGCACAACAATTCGTCCGCTTCGAGCGCGTCGTCGC
CATGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:76360..76914+

>Ggra4725.t1 ID=Ggra4725.t1|Name=Ggra4725.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000065_pilon:76360..76914+ (Gracilaria gracilis GNS1m male)
ATGAGCCGCTCCGCGCCCCCCCGTCGCGCGCCGCTATGGGCGCGTCTTCT
GCCGCAGGTGGCGCCCACGCCGCTCTCAGCCGTGCTGCCGCTGCTGGCAG
CGCCGCTGGCCACGATGGGCATGGCGGCCGTGTCGTCGGCGCACGACCTC
ACCACGCTGCACGAGCCGCCCGCGTCGCGCTCGTTCGTGTTCGGCTCGTC
GCTCCGCGCGTGCGCCATCTGTCTGGAGGAGTACATTCCCGGTGATCGAC
TACGCATGTTAGAGCCGTGTGGACACTGCTTTCACCAGGCTTGCATTGAC
GGCTGGCTTGGTGTGCCCGAGTGTCTCAGGCGTGACGCGCGAGTGTGTCC
TGTGTGCAACGTCGTGTTGGGTGCGCCGTTTCATCGAGAGCAGGCTGAGG
TGCGCGATGAGCAGCTCAACACACGCACGCCGTGGCCGAGCGTGCAGTTG
ATTGACCTCAGTCCGCATCAGAGCTGGGTGGAATGGTTCGCAGACCTGCT
CAAGCTGTACTACCCGCACAACAATTCGTCCGCTTCGAGCGCGTCGTCGC
CATGA
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