Ggra4723.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4723.t1
Unique NameGgra4723.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:72113..73372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272952.HpaP800762
Preferred namePPP1R8
PFAMsFHA
Max annot lvl2759|Eukaryota
KEGG koko:K13216,ko:K17086
GOsGO:0000902,GO:0000904,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004540,GO:0004857,GO:0004864,GO:0004865,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008152,GO:0008157,GO:0008283,GO:0008995,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0010921,GO:0010923,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0019208,GO:0019212,GO:0019220,GO:0019222,GO:0019439,GO:0019888,GO:0019899,GO:0019902,GO:0019903,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032515,GO:0032989,GO:0032990,GO:0034641,GO:0034655,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0040011,GO:0042221,GO:0042330,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043666,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045936,GO:0046483,GO:0046700,GO:0048468,GO:0048519,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0060255,GO:0061564,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097485,GO:0098772,GO:0120036,GO:0120039,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
Evalue4.9e-05
EggNOG OGsKOG1880@1|root,KOG1880@2759|Eukaryota
Descriptionprotein serine/threonine phosphatase inhibitor activity
COG categoryT
BRITEko00000,ko01000,ko01009,ko03041,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4723Ggra4723Gracilaria gracilis GNS1m malegenetig00000065_pilon 72113..73372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4723.t1.start1Ggra4723.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 72113..72115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4723.t1.CDS1Ggra4723.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 72113..73372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4723.t1.exon1Ggra4723.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 72113..73372 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4723.t1.stop1Ggra4723.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 73370..73372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4723.t1Ggra4723.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 72113..73372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4723.t1 ID=Ggra4723.t1|Name=Ggra4723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MSLLPTQMGLPVCLVPSKLKYIPNADTLGVSPKIYGFQEVRQRTKETVGW
IKFMDPIPFLLFGRDLGASHVFVGHPSVSPQHAVAFWDRKSGLCMIQDLE
SESGTKVNGQSLSHLHAVFLNPKDEIVMGSSAHYYVFDYLPLEYRDEQPA
NTQPASMDARTEASGLPPPVRRLSNDSPPPRASGAFSRSPTTSELRARSG
GMSARMLAPPRRSAPLGEMPPDRELEFSRPDDPNYDRGRAMDNRWHDRPM
GRGEPMDDDRRRMPPPNPSRYPPGRDPSSPPLRRRDSVDDRYDDRMSIRP
RMREPHDYDRRPFPQEDLMDSRRPLPPAPQHRFGPPDGHPDDMRPPLPEM
EFDSQRGPMREFDERGGPPRPPSDGYRGRGGREFDYDRRPDDYRPRSGGR
GAYNGGDSRRHRQRPSDGY*
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spliced messenger RNA

>Ggra4723.t1 ID=Ggra4723.t1|Name=Ggra4723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000065_pilon:72113..73372+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTGTTACCAACGCAGATGGGCTTGCCCGTCTGCCTTGTACCTTC
CAAGCTCAAATATATACCCAACGCGGACACTCTCGGAGTGTCACCAAAAA
TCTACGGCTTTCAGGAGGTACGTCAAAGGACCAAAGAAACCGTCGGCTGG
ATCAAGTTCATGGACCCCATCCCGTTCCTGCTTTTCGGTCGCGACCTTGG
TGCCTCCCACGTCTTCGTCGGCCACCCTTCGGTATCGCCTCAGCACGCTG
TTGCGTTTTGGGACCGCAAGAGTGGCCTTTGTATGATCCAGGATCTGGAA
TCAGAATCTGGCACCAAGGTCAACGGCCAGTCATTGTCCCACCTGCACGC
GGTTTTTCTCAACCCCAAAGACGAAATTGTGATGGGCAGCTCTGCACATT
ATTATGTCTTCGACTACCTGCCTCTGGAGTACCGTGATGAACAACCTGCC
AACACACAGCCAGCCTCCATGGATGCTCGAACAGAAGCGTCGGGTCTCCC
ACCACCGGTACGAAGACTGTCAAATGATTCACCGCCCCCTAGAGCCTCAG
GCGCGTTTTCTCGCTCCCCGACCACCTCCGAACTCAGGGCGCGCTCAGGA
GGCATGTCTGCAAGAATGTTGGCACCCCCGCGCAGAAGCGCTCCTCTTGG
AGAAATGCCTCCTGATAGAGAGCTTGAGTTTTCTAGACCCGACGACCCGA
ATTACGACCGCGGTCGCGCTATGGACAATCGCTGGCATGACAGACCGATG
GGAAGAGGGGAGCCCATGGATGATGACCGTAGAAGAATGCCGCCCCCGAA
TCCAAGTCGCTACCCACCGGGACGAGACCCTAGCAGTCCACCGCTCCGGC
GTAGAGATTCGGTAGACGACAGATATGATGATCGAATGAGTATTCGCCCG
CGAATGCGCGAACCTCATGATTATGATCGGCGCCCATTTCCGCAGGAAGA
TCTCATGGACAGCCGTCGACCCCTTCCTCCGGCCCCGCAACATCGTTTTG
GACCACCAGATGGCCACCCGGACGATATGAGGCCTCCGCTACCTGAAATG
GAATTTGACAGTCAAAGGGGCCCGATGAGAGAATTTGACGAGAGGGGCGG
TCCTCCTCGTCCTCCTTCTGATGGTTATCGCGGAAGGGGGGGCAGGGAGT
TCGATTATGACAGGCGTCCTGATGATTATCGTCCTAGAAGTGGCGGACGT
GGGGCTTACAACGGTGGCGATTCGAGAAGACACCGTCAGAGACCAAGCGA
TGGTTACTGA
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protein sequence of Ggra4723.t1

>Ggra4723.t1 ID=Ggra4723.t1|Name=Ggra4723.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MSLLPTQMGLPVCLVPSKLKYIPNADTLGVSPKIYGFQEVRQRTKETVGW
IKFMDPIPFLLFGRDLGASHVFVGHPSVSPQHAVAFWDRKSGLCMIQDLE
SESGTKVNGQSLSHLHAVFLNPKDEIVMGSSAHYYVFDYLPLEYRDEQPA
NTQPASMDARTEASGLPPPVRRLSNDSPPPRASGAFSRSPTTSELRARSG
GMSARMLAPPRRSAPLGEMPPDRELEFSRPDDPNYDRGRAMDNRWHDRPM
GRGEPMDDDRRRMPPPNPSRYPPGRDPSSPPLRRRDSVDDRYDDRMSIRP
RMREPHDYDRRPFPQEDLMDSRRPLPPAPQHRFGPPDGHPDDMRPPLPEM
EFDSQRGPMREFDERGGPPRPPSDGYRGRGGREFDYDRRPDDYRPRSGGR
GAYNGGDSRRHRQRPSDGY*
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mRNA from alignment at tig00000065_pilon:72113..73372+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4723.t1 ID=Ggra4723.t1|Name=Ggra4723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000065_pilon:72113..73372+ (Gracilaria gracilis GNS1m male)
ATGTCTTTGTTACCAACGCAGATGGGCTTGCCCGTCTGCCTTGTACCTTC
CAAGCTCAAATATATACCCAACGCGGACACTCTCGGAGTGTCACCAAAAA
TCTACGGCTTTCAGGAGGTACGTCAAAGGACCAAAGAAACCGTCGGCTGG
ATCAAGTTCATGGACCCCATCCCGTTCCTGCTTTTCGGTCGCGACCTTGG
TGCCTCCCACGTCTTCGTCGGCCACCCTTCGGTATCGCCTCAGCACGCTG
TTGCGTTTTGGGACCGCAAGAGTGGCCTTTGTATGATCCAGGATCTGGAA
TCAGAATCTGGCACCAAGGTCAACGGCCAGTCATTGTCCCACCTGCACGC
GGTTTTTCTCAACCCCAAAGACGAAATTGTGATGGGCAGCTCTGCACATT
ATTATGTCTTCGACTACCTGCCTCTGGAGTACCGTGATGAACAACCTGCC
AACACACAGCCAGCCTCCATGGATGCTCGAACAGAAGCGTCGGGTCTCCC
ACCACCGGTACGAAGACTGTCAAATGATTCACCGCCCCCTAGAGCCTCAG
GCGCGTTTTCTCGCTCCCCGACCACCTCCGAACTCAGGGCGCGCTCAGGA
GGCATGTCTGCAAGAATGTTGGCACCCCCGCGCAGAAGCGCTCCTCTTGG
AGAAATGCCTCCTGATAGAGAGCTTGAGTTTTCTAGACCCGACGACCCGA
ATTACGACCGCGGTCGCGCTATGGACAATCGCTGGCATGACAGACCGATG
GGAAGAGGGGAGCCCATGGATGATGACCGTAGAAGAATGCCGCCCCCGAA
TCCAAGTCGCTACCCACCGGGACGAGACCCTAGCAGTCCACCGCTCCGGC
GTAGAGATTCGGTAGACGACAGATATGATGATCGAATGAGTATTCGCCCG
CGAATGCGCGAACCTCATGATTATGATCGGCGCCCATTTCCGCAGGAAGA
TCTCATGGACAGCCGTCGACCCCTTCCTCCGGCCCCGCAACATCGTTTTG
GACCACCAGATGGCCACCCGGACGATATGAGGCCTCCGCTACCTGAAATG
GAATTTGACAGTCAAAGGGGCCCGATGAGAGAATTTGACGAGAGGGGCGG
TCCTCCTCGTCCTCCTTCTGATGGTTATCGCGGAAGGGGGGGCAGGGAGT
TCGATTATGACAGGCGTCCTGATGATTATCGTCCTAGAAGTGGCGGACGT
GGGGCTTACAACGGTGGCGATTCGAGAAGACACCGTCAGAGACCAAGCGA
TGGTTACTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:72113..73372+

>Ggra4723.t1 ID=Ggra4723.t1|Name=Ggra4723.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000065_pilon:72113..73372+ (Gracilaria gracilis GNS1m male)
ATGTCTTTGTTACCAACGCAGATGGGCTTGCCCGTCTGCCTTGTACCTTC
CAAGCTCAAATATATACCCAACGCGGACACTCTCGGAGTGTCACCAAAAA
TCTACGGCTTTCAGGAGGTACGTCAAAGGACCAAAGAAACCGTCGGCTGG
ATCAAGTTCATGGACCCCATCCCGTTCCTGCTTTTCGGTCGCGACCTTGG
TGCCTCCCACGTCTTCGTCGGCCACCCTTCGGTATCGCCTCAGCACGCTG
TTGCGTTTTGGGACCGCAAGAGTGGCCTTTGTATGATCCAGGATCTGGAA
TCAGAATCTGGCACCAAGGTCAACGGCCAGTCATTGTCCCACCTGCACGC
GGTTTTTCTCAACCCCAAAGACGAAATTGTGATGGGCAGCTCTGCACATT
ATTATGTCTTCGACTACCTGCCTCTGGAGTACCGTGATGAACAACCTGCC
AACACACAGCCAGCCTCCATGGATGCTCGAACAGAAGCGTCGGGTCTCCC
ACCACCGGTACGAAGACTGTCAAATGATTCACCGCCCCCTAGAGCCTCAG
GCGCGTTTTCTCGCTCCCCGACCACCTCCGAACTCAGGGCGCGCTCAGGA
GGCATGTCTGCAAGAATGTTGGCACCCCCGCGCAGAAGCGCTCCTCTTGG
AGAAATGCCTCCTGATAGAGAGCTTGAGTTTTCTAGACCCGACGACCCGA
ATTACGACCGCGGTCGCGCTATGGACAATCGCTGGCATGACAGACCGATG
GGAAGAGGGGAGCCCATGGATGATGACCGTAGAAGAATGCCGCCCCCGAA
TCCAAGTCGCTACCCACCGGGACGAGACCCTAGCAGTCCACCGCTCCGGC
GTAGAGATTCGGTAGACGACAGATATGATGATCGAATGAGTATTCGCCCG
CGAATGCGCGAACCTCATGATTATGATCGGCGCCCATTTCCGCAGGAAGA
TCTCATGGACAGCCGTCGACCCCTTCCTCCGGCCCCGCAACATCGTTTTG
GACCACCAGATGGCCACCCGGACGATATGAGGCCTCCGCTACCTGAAATG
GAATTTGACAGTCAAAGGGGCCCGATGAGAGAATTTGACGAGAGGGGCGG
TCCTCCTCGTCCTCCTTCTGATGGTTATCGCGGAAGGGGGGGCAGGGAGT
TCGATTATGACAGGCGTCCTGATGATTATCGTCCTAGAAGTGGCGGACGT
GGGGCTTACAACGGTGGCGATTCGAGAAGACACCGTCAGAGACCAAGCGA
TGGTTACTGA
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