Ggra4713.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4713.t1
Unique NameGgra4713.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:47643..48680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4713Ggra4713Gracilaria gracilis GNS1m malegenetig00000065_pilon 47643..48680 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4713.t1.start1Ggra4713.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 47643..47645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4713.t1.CDS1Ggra4713.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 47643..48680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4713.t1.exon1Ggra4713.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 47643..48680 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4713.t1.stop1Ggra4713.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 48678..48680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4713.t1Ggra4713.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 47643..48680 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4713.t1 ID=Ggra4713.t1|Name=Ggra4713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MQDHSDHTPSSPFHSPQTHASSLRELPEDVQQQLISLLNQSDQAHLATSC
QYFHHLVTPLLRRIFRCVSCQAHLFEPKELALYDTQPSSPRSTFGPSSKL
AKRTFFQLVQTNPTRDVTQFGMVLDHRRGAANFHVLRHLMQTVYKDGRFP
LPQQLQCVQALRCEACGVFVGFRHSDGGAVRDFVHHDFVELCDSKGRLMT
WNGHYLPPPEGMVNCANPQCRNVLFDRDDMLPWSHVLASSRLTDMNAYLE
WDHSWAGAATADQPAFFVKRLRDGSVHVRNVRAEHLRQGDMIVGDVHCSQ
CDSHIGWKLLSEVAEGDMLHNYDQIGRFGIIRGAVAPTEPRNMHI*
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spliced messenger RNA

>Ggra4713.t1 ID=Ggra4713.t1|Name=Ggra4713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000065_pilon:47643..48680+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGACCACTCCGACCACACACCTTCATCGCCGTTCCATTCTCCGCA
AACGCACGCCTCTTCTCTGCGCGAGTTACCGGAGGATGTACAACAACAAC
TCATCTCCCTGCTCAATCAATCCGATCAAGCCCACCTCGCCACCTCGTGC
CAGTACTTTCACCACCTAGTCACTCCTCTGCTACGTCGCATATTCCGCTG
CGTCAGCTGCCAGGCGCACCTGTTCGAACCAAAGGAACTCGCTCTGTATG
ACACCCAACCGTCGTCGCCGCGAAGCACCTTCGGTCCGTCTAGCAAGCTT
GCCAAGCGCACCTTCTTCCAGTTGGTGCAAACCAACCCAACCAGAGATGT
GACCCAGTTTGGAATGGTGCTTGACCACAGACGCGGCGCCGCTAACTTTC
ATGTGCTGCGTCATCTCATGCAGACTGTTTACAAGGATGGGCGCTTCCCA
TTACCTCAGCAGTTGCAATGCGTGCAGGCGCTCAGATGCGAGGCGTGTGG
CGTGTTTGTGGGCTTTCGACACAGTGATGGCGGTGCTGTTCGTGACTTTG
TGCATCACGACTTTGTGGAGCTGTGTGATTCAAAGGGTCGACTCATGACT
TGGAATGGGCACTACTTACCCCCGCCGGAGGGAATGGTTAACTGCGCAAA
CCCGCAGTGTCGCAACGTGCTATTCGACCGCGATGACATGCTGCCGTGGT
CGCATGTGCTGGCGAGCTCGAGACTCACCGATATGAACGCGTATCTCGAG
TGGGACCATTCGTGGGCTGGCGCCGCCACCGCCGACCAACCGGCGTTCTT
CGTCAAGCGCTTGAGGGACGGTAGTGTGCATGTGAGAAACGTTCGAGCCG
AACATCTGCGCCAAGGAGATATGATTGTGGGCGATGTTCATTGCTCACAG
TGCGACTCTCATATTGGATGGAAGCTGCTGTCCGAAGTTGCGGAGGGAGA
TATGCTGCATAACTACGATCAGATAGGACGGTTTGGAATCATCCGCGGCG
CTGTTGCGCCGACGGAGCCACGAAACATGCATATTTGA
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protein sequence of Ggra4713.t1

>Ggra4713.t1 ID=Ggra4713.t1|Name=Ggra4713.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MQDHSDHTPSSPFHSPQTHASSLRELPEDVQQQLISLLNQSDQAHLATSC
QYFHHLVTPLLRRIFRCVSCQAHLFEPKELALYDTQPSSPRSTFGPSSKL
AKRTFFQLVQTNPTRDVTQFGMVLDHRRGAANFHVLRHLMQTVYKDGRFP
LPQQLQCVQALRCEACGVFVGFRHSDGGAVRDFVHHDFVELCDSKGRLMT
WNGHYLPPPEGMVNCANPQCRNVLFDRDDMLPWSHVLASSRLTDMNAYLE
WDHSWAGAATADQPAFFVKRLRDGSVHVRNVRAEHLRQGDMIVGDVHCSQ
CDSHIGWKLLSEVAEGDMLHNYDQIGRFGIIRGAVAPTEPRNMHI*
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mRNA from alignment at tig00000065_pilon:47643..48680+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4713.t1 ID=Ggra4713.t1|Name=Ggra4713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000065_pilon:47643..48680+ (Gracilaria gracilis GNS1m male)
ATGCAAGACCACTCCGACCACACACCTTCATCGCCGTTCCATTCTCCGCA
AACGCACGCCTCTTCTCTGCGCGAGTTACCGGAGGATGTACAACAACAAC
TCATCTCCCTGCTCAATCAATCCGATCAAGCCCACCTCGCCACCTCGTGC
CAGTACTTTCACCACCTAGTCACTCCTCTGCTACGTCGCATATTCCGCTG
CGTCAGCTGCCAGGCGCACCTGTTCGAACCAAAGGAACTCGCTCTGTATG
ACACCCAACCGTCGTCGCCGCGAAGCACCTTCGGTCCGTCTAGCAAGCTT
GCCAAGCGCACCTTCTTCCAGTTGGTGCAAACCAACCCAACCAGAGATGT
GACCCAGTTTGGAATGGTGCTTGACCACAGACGCGGCGCCGCTAACTTTC
ATGTGCTGCGTCATCTCATGCAGACTGTTTACAAGGATGGGCGCTTCCCA
TTACCTCAGCAGTTGCAATGCGTGCAGGCGCTCAGATGCGAGGCGTGTGG
CGTGTTTGTGGGCTTTCGACACAGTGATGGCGGTGCTGTTCGTGACTTTG
TGCATCACGACTTTGTGGAGCTGTGTGATTCAAAGGGTCGACTCATGACT
TGGAATGGGCACTACTTACCCCCGCCGGAGGGAATGGTTAACTGCGCAAA
CCCGCAGTGTCGCAACGTGCTATTCGACCGCGATGACATGCTGCCGTGGT
CGCATGTGCTGGCGAGCTCGAGACTCACCGATATGAACGCGTATCTCGAG
TGGGACCATTCGTGGGCTGGCGCCGCCACCGCCGACCAACCGGCGTTCTT
CGTCAAGCGCTTGAGGGACGGTAGTGTGCATGTGAGAAACGTTCGAGCCG
AACATCTGCGCCAAGGAGATATGATTGTGGGCGATGTTCATTGCTCACAG
TGCGACTCTCATATTGGATGGAAGCTGCTGTCCGAAGTTGCGGAGGGAGA
TATGCTGCATAACTACGATCAGATAGGACGGTTTGGAATCATCCGCGGCG
CTGTTGCGCCGACGGAGCCACGAAACATGCATATTTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:47643..48680+

>Ggra4713.t1 ID=Ggra4713.t1|Name=Ggra4713.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000065_pilon:47643..48680+ (Gracilaria gracilis GNS1m male)
ATGCAAGACCACTCCGACCACACACCTTCATCGCCGTTCCATTCTCCGCA
AACGCACGCCTCTTCTCTGCGCGAGTTACCGGAGGATGTACAACAACAAC
TCATCTCCCTGCTCAATCAATCCGATCAAGCCCACCTCGCCACCTCGTGC
CAGTACTTTCACCACCTAGTCACTCCTCTGCTACGTCGCATATTCCGCTG
CGTCAGCTGCCAGGCGCACCTGTTCGAACCAAAGGAACTCGCTCTGTATG
ACACCCAACCGTCGTCGCCGCGAAGCACCTTCGGTCCGTCTAGCAAGCTT
GCCAAGCGCACCTTCTTCCAGTTGGTGCAAACCAACCCAACCAGAGATGT
GACCCAGTTTGGAATGGTGCTTGACCACAGACGCGGCGCCGCTAACTTTC
ATGTGCTGCGTCATCTCATGCAGACTGTTTACAAGGATGGGCGCTTCCCA
TTACCTCAGCAGTTGCAATGCGTGCAGGCGCTCAGATGCGAGGCGTGTGG
CGTGTTTGTGGGCTTTCGACACAGTGATGGCGGTGCTGTTCGTGACTTTG
TGCATCACGACTTTGTGGAGCTGTGTGATTCAAAGGGTCGACTCATGACT
TGGAATGGGCACTACTTACCCCCGCCGGAGGGAATGGTTAACTGCGCAAA
CCCGCAGTGTCGCAACGTGCTATTCGACCGCGATGACATGCTGCCGTGGT
CGCATGTGCTGGCGAGCTCGAGACTCACCGATATGAACGCGTATCTCGAG
TGGGACCATTCGTGGGCTGGCGCCGCCACCGCCGACCAACCGGCGTTCTT
CGTCAAGCGCTTGAGGGACGGTAGTGTGCATGTGAGAAACGTTCGAGCCG
AACATCTGCGCCAAGGAGATATGATTGTGGGCGATGTTCATTGCTCACAG
TGCGACTCTCATATTGGATGGAAGCTGCTGTCCGAAGTTGCGGAGGGAGA
TATGCTGCATAACTACGATCAGATAGGACGGTTTGGAATCATCCGCGGCG
CTGTTGCGCCGACGGAGCCACGAAACATGCATATTTGA
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