Ggra4695.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4695.t1
Unique NameGgra4695.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:156973..158352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue4.21e-21
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4695Ggra4695Gracilaria gracilis GNS1m malegenetig00000124_pilon 156973..158352 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4695.t1.stop1Ggra4695.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 156973..156975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4695.t1.CDS1Ggra4695.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 156973..158352 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4695.t1.exon1Ggra4695.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 156973..158352 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4695.t1.start1Ggra4695.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 158350..158352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4695.t1Ggra4695.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 156973..158352 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4695.t1 ID=Ggra4695.t1|Name=Ggra4695.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=460bp
MVHDHLLPFIVHPITHEVVTTEERKLLELEYYDPVSAPVHALCEIISCQM
HLGFKIVYLRKVFQFQTSFGQVKDLVLFEVHPESTDLTLPFGLIWTPKHE
TRSVLGLPTSSMVSKFLLEYSKSGLDSKEQVLYPYSRAGWFRRAKEWMSS
NLERYEQEKVMAVNQVTLNSQGSVLRATTRSNRKYFLKAVPPNGMNEEVV
VSCALANVFPDVFRKPIAVHNGKRWILMSDYGTPLGHGECFMSSDTGSER
MRNILQEWSVVQKRAIEKKDVLTHLGVPVWGESFVLQEVQKMMDDPVWYN
MQKTRMNEEERLRYGDELEYKKNYIAYIKRLFGRLKDFDVPLSLVHGDLN
PVNVVMRDNQTCIFFDFSLTCISAPFIDAIRFVNLCEGRKEDLEFYLEQW
TEFESMDRLWKLLDIVDDLDGVLSRLILYQGYLTSEEFLRDATREELSFG
VCNTFGKYA*
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spliced messenger RNA

>Ggra4695.t1 ID=Ggra4695.t1|Name=Ggra4695.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000124_pilon:156973..158352- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCACGACCACTTGTTGCCCTTCATTGTTCATCCCATAACCCATGA
GGTTGTGACTACCGAAGAGCGAAAGCTTTTGGAGCTGGAGTACTATGACC
CAGTTTCCGCACCGGTACATGCATTATGTGAGATAATTAGCTGTCAAATG
CATTTGGGATTTAAGATCGTGTACTTGAGAAAGGTTTTTCAATTCCAAAC
TAGTTTTGGTCAGGTCAAAGATCTTGTCCTTTTCGAAGTGCACCCGGAAT
CTACCGATTTAACGCTACCGTTTGGTCTGATATGGACACCAAAACATGAG
ACTAGAAGCGTCTTGGGGTTACCAACATCGTCCATGGTTTCAAAATTTCT
CCTTGAGTACTCAAAGAGTGGCTTGGACTCTAAGGAGCAAGTTTTATATC
CATACTCACGAGCTGGGTGGTTTAGACGGGCGAAGGAGTGGATGTCTTCG
AATTTGGAAAGGTATGAACAAGAGAAAGTGATGGCAGTGAATCAAGTTAC
TCTGAATTCTCAGGGCAGTGTTCTACGTGCAACGACCCGATCCAATCGTA
AGTACTTCTTGAAGGCTGTTCCACCCAATGGAATGAACGAAGAAGTGGTG
GTCTCGTGCGCGTTAGCAAATGTGTTCCCGGACGTATTTCGGAAACCTAT
TGCTGTTCACAACGGGAAAAGATGGATTCTTATGAGTGACTACGGTACTC
CTTTGGGACATGGAGAATGTTTCATGAGCTCCGACACGGGCTCGGAACGT
ATGCGCAACATTCTGCAAGAGTGGAGTGTTGTACAAAAGAGAGCCATTGA
AAAGAAAGATGTCCTTACACATCTCGGCGTTCCCGTGTGGGGAGAGTCAT
TTGTACTGCAAGAAGTACAAAAAATGATGGACGATCCTGTTTGGTACAAC
ATGCAGAAGACGAGAATGAATGAAGAAGAACGTTTGAGGTATGGGGATGA
ATTGGAGTACAAGAAAAACTACATAGCATACATAAAGCGTCTTTTTGGGA
GATTGAAAGACTTTGATGTGCCGTTATCGCTCGTACACGGAGACCTGAAC
CCTGTGAATGTTGTCATGCGGGATAACCAAACTTGCATATTCTTCGACTT
TTCACTGACCTGTATTTCGGCGCCTTTCATAGACGCGATTCGATTTGTTA
ATTTATGCGAGGGTAGAAAGGAAGATCTTGAATTTTATCTCGAGCAGTGG
ACTGAGTTCGAAAGCATGGACAGGCTTTGGAAGCTCCTTGACATCGTAGA
CGATCTCGATGGAGTCCTCAGCCGTTTGATATTGTATCAGGGTTATCTGA
CGTCTGAGGAGTTTTTGAGAGATGCTACTCGTGAAGAGCTCAGTTTTGGA
GTTTGCAATACATTCGGGAAGTATGCTTGA
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protein sequence of Ggra4695.t1

>Ggra4695.t1 ID=Ggra4695.t1|Name=Ggra4695.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=460bp
MVHDHLLPFIVHPITHEVVTTEERKLLELEYYDPVSAPVHALCEIISCQM
HLGFKIVYLRKVFQFQTSFGQVKDLVLFEVHPESTDLTLPFGLIWTPKHE
TRSVLGLPTSSMVSKFLLEYSKSGLDSKEQVLYPYSRAGWFRRAKEWMSS
NLERYEQEKVMAVNQVTLNSQGSVLRATTRSNRKYFLKAVPPNGMNEEVV
VSCALANVFPDVFRKPIAVHNGKRWILMSDYGTPLGHGECFMSSDTGSER
MRNILQEWSVVQKRAIEKKDVLTHLGVPVWGESFVLQEVQKMMDDPVWYN
MQKTRMNEEERLRYGDELEYKKNYIAYIKRLFGRLKDFDVPLSLVHGDLN
PVNVVMRDNQTCIFFDFSLTCISAPFIDAIRFVNLCEGRKEDLEFYLEQW
TEFESMDRLWKLLDIVDDLDGVLSRLILYQGYLTSEEFLRDATREELSFG
VCNTFGKYA*
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mRNA from alignment at tig00000124_pilon:156973..158352-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4695.t1 ID=Ggra4695.t1|Name=Ggra4695.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000124_pilon:156973..158352- (Gracilaria gracilis GNS1m male)
ATGGTTCACGACCACTTGTTGCCCTTCATTGTTCATCCCATAACCCATGA
GGTTGTGACTACCGAAGAGCGAAAGCTTTTGGAGCTGGAGTACTATGACC
CAGTTTCCGCACCGGTACATGCATTATGTGAGATAATTAGCTGTCAAATG
CATTTGGGATTTAAGATCGTGTACTTGAGAAAGGTTTTTCAATTCCAAAC
TAGTTTTGGTCAGGTCAAAGATCTTGTCCTTTTCGAAGTGCACCCGGAAT
CTACCGATTTAACGCTACCGTTTGGTCTGATATGGACACCAAAACATGAG
ACTAGAAGCGTCTTGGGGTTACCAACATCGTCCATGGTTTCAAAATTTCT
CCTTGAGTACTCAAAGAGTGGCTTGGACTCTAAGGAGCAAGTTTTATATC
CATACTCACGAGCTGGGTGGTTTAGACGGGCGAAGGAGTGGATGTCTTCG
AATTTGGAAAGGTATGAACAAGAGAAAGTGATGGCAGTGAATCAAGTTAC
TCTGAATTCTCAGGGCAGTGTTCTACGTGCAACGACCCGATCCAATCGTA
AGTACTTCTTGAAGGCTGTTCCACCCAATGGAATGAACGAAGAAGTGGTG
GTCTCGTGCGCGTTAGCAAATGTGTTCCCGGACGTATTTCGGAAACCTAT
TGCTGTTCACAACGGGAAAAGATGGATTCTTATGAGTGACTACGGTACTC
CTTTGGGACATGGAGAATGTTTCATGAGCTCCGACACGGGCTCGGAACGT
ATGCGCAACATTCTGCAAGAGTGGAGTGTTGTACAAAAGAGAGCCATTGA
AAAGAAAGATGTCCTTACACATCTCGGCGTTCCCGTGTGGGGAGAGTCAT
TTGTACTGCAAGAAGTACAAAAAATGATGGACGATCCTGTTTGGTACAAC
ATGCAGAAGACGAGAATGAATGAAGAAGAACGTTTGAGGTATGGGGATGA
ATTGGAGTACAAGAAAAACTACATAGCATACATAAAGCGTCTTTTTGGGA
GATTGAAAGACTTTGATGTGCCGTTATCGCTCGTACACGGAGACCTGAAC
CCTGTGAATGTTGTCATGCGGGATAACCAAACTTGCATATTCTTCGACTT
TTCACTGACCTGTATTTCGGCGCCTTTCATAGACGCGATTCGATTTGTTA
ATTTATGCGAGGGTAGAAAGGAAGATCTTGAATTTTATCTCGAGCAGTGG
ACTGAGTTCGAAAGCATGGACAGGCTTTGGAAGCTCCTTGACATCGTAGA
CGATCTCGATGGAGTCCTCAGCCGTTTGATATTGTATCAGGGTTATCTGA
CGTCTGAGGAGTTTTTGAGAGATGCTACTCGTGAAGAGCTCAGTTTTGGA
GTTTGCAATACATTCGGGAAGTATGCTTGA
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Coding sequence (CDS) from alignment at tig00000124_pilon:156973..158352-

>Ggra4695.t1 ID=Ggra4695.t1|Name=Ggra4695.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1380bp|location=Sequence derived from alignment at tig00000124_pilon:156973..158352- (Gracilaria gracilis GNS1m male)
ATGGTTCACGACCACTTGTTGCCCTTCATTGTTCATCCCATAACCCATGA
GGTTGTGACTACCGAAGAGCGAAAGCTTTTGGAGCTGGAGTACTATGACC
CAGTTTCCGCACCGGTACATGCATTATGTGAGATAATTAGCTGTCAAATG
CATTTGGGATTTAAGATCGTGTACTTGAGAAAGGTTTTTCAATTCCAAAC
TAGTTTTGGTCAGGTCAAAGATCTTGTCCTTTTCGAAGTGCACCCGGAAT
CTACCGATTTAACGCTACCGTTTGGTCTGATATGGACACCAAAACATGAG
ACTAGAAGCGTCTTGGGGTTACCAACATCGTCCATGGTTTCAAAATTTCT
CCTTGAGTACTCAAAGAGTGGCTTGGACTCTAAGGAGCAAGTTTTATATC
CATACTCACGAGCTGGGTGGTTTAGACGGGCGAAGGAGTGGATGTCTTCG
AATTTGGAAAGGTATGAACAAGAGAAAGTGATGGCAGTGAATCAAGTTAC
TCTGAATTCTCAGGGCAGTGTTCTACGTGCAACGACCCGATCCAATCGTA
AGTACTTCTTGAAGGCTGTTCCACCCAATGGAATGAACGAAGAAGTGGTG
GTCTCGTGCGCGTTAGCAAATGTGTTCCCGGACGTATTTCGGAAACCTAT
TGCTGTTCACAACGGGAAAAGATGGATTCTTATGAGTGACTACGGTACTC
CTTTGGGACATGGAGAATGTTTCATGAGCTCCGACACGGGCTCGGAACGT
ATGCGCAACATTCTGCAAGAGTGGAGTGTTGTACAAAAGAGAGCCATTGA
AAAGAAAGATGTCCTTACACATCTCGGCGTTCCCGTGTGGGGAGAGTCAT
TTGTACTGCAAGAAGTACAAAAAATGATGGACGATCCTGTTTGGTACAAC
ATGCAGAAGACGAGAATGAATGAAGAAGAACGTTTGAGGTATGGGGATGA
ATTGGAGTACAAGAAAAACTACATAGCATACATAAAGCGTCTTTTTGGGA
GATTGAAAGACTTTGATGTGCCGTTATCGCTCGTACACGGAGACCTGAAC
CCTGTGAATGTTGTCATGCGGGATAACCAAACTTGCATATTCTTCGACTT
TTCACTGACCTGTATTTCGGCGCCTTTCATAGACGCGATTCGATTTGTTA
ATTTATGCGAGGGTAGAAAGGAAGATCTTGAATTTTATCTCGAGCAGTGG
ACTGAGTTCGAAAGCATGGACAGGCTTTGGAAGCTCCTTGACATCGTAGA
CGATCTCGATGGAGTCCTCAGCCGTTTGATATTGTATCAGGGTTATCTGA
CGTCTGAGGAGTTTTTGAGAGATGCTACTCGTGAAGAGCTCAGTTTTGGA
GTTTGCAATACATTCGGGAAGTATGCTTGA
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