Ggra4685.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4685.t1
Unique NameGgra4685.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:88482..89291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4685Ggra4685Gracilaria gracilis GNS1m malegenetig00000124_pilon 88482..89291 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4685.t1.stop1Ggra4685.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 88482..88484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4685.t1.CDS1Ggra4685.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 88482..89291 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4685.t1.exon1Ggra4685.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 88482..89291 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4685.t1.start1Ggra4685.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 89289..89291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4685.t1Ggra4685.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 88482..89291 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4685.t1 ID=Ggra4685.t1|Name=Ggra4685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MNHPSHSADREPPQIGADAAQILASMERQQRKILQGFTTLQEQIIHSTYI
ISHCMKSHFKILLHIEQQKVRDRLSVQPSLEAAHAYFEKLQNFGPAALSG
IGAVAKRTVVGEQQLTEKTEEASNSIKPIDVEQSIENPKTQAPILKEAQR
HIVTNDLVALGSLTQNVSQKTFEHNEQLDLHNQLIMGRQIENDAEDNVWI
PNLNLNQGMTMLPPDLLSFRPPVTGWKGTSDRLRQANMMAQNVSNSHSVS
TRGRAIARRRARRSSRSFR*
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spliced messenger RNA

>Ggra4685.t1 ID=Ggra4685.t1|Name=Ggra4685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000124_pilon:88482..89291- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCATCCTTCTCATTCCGCAGACCGAGAGCCCCCTCAAATAGGTGC
CGATGCTGCTCAAATATTAGCATCTATGGAACGCCAGCAGCGCAAAATAC
TACAAGGATTTACGACGCTACAAGAGCAAATCATTCACTCAACCTATATC
ATTTCACATTGTATGAAATCTCATTTCAAAATACTATTGCATATTGAACA
ACAGAAAGTACGTGACCGGCTAAGCGTACAACCGTCGTTGGAAGCAGCTC
ATGCCTATTTCGAAAAGCTCCAGAACTTTGGACCGGCAGCGTTATCTGGA
ATCGGGGCAGTAGCCAAAAGAACCGTCGTAGGTGAACAGCAGCTTACCGA
AAAAACAGAGGAAGCAAGCAATTCGATAAAACCAATTGACGTCGAACAAA
GCATTGAAAACCCCAAAACACAAGCCCCAATCCTTAAGGAAGCACAAAGG
CATATCGTGACGAATGATTTGGTGGCATTGGGATCGCTGACACAGAATGT
TTCCCAAAAAACCTTTGAGCACAATGAACAGTTGGACTTGCATAACCAAT
TGATTATGGGGAGGCAGATTGAAAATGACGCAGAAGATAATGTGTGGATA
CCAAATTTGAACTTGAATCAAGGTATGACAATGTTGCCACCAGATTTACT
TAGCTTTCGACCACCTGTGACAGGCTGGAAGGGAACTTCAGATCGCTTGC
GTCAAGCTAACATGATGGCGCAAAACGTTAGTAATTCGCATTCAGTATCG
ACGCGTGGTCGTGCTATTGCACGACGTCGTGCTAGACGTTCGTCGCGGTC
TTTTAGGTGA
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protein sequence of Ggra4685.t1

>Ggra4685.t1 ID=Ggra4685.t1|Name=Ggra4685.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MNHPSHSADREPPQIGADAAQILASMERQQRKILQGFTTLQEQIIHSTYI
ISHCMKSHFKILLHIEQQKVRDRLSVQPSLEAAHAYFEKLQNFGPAALSG
IGAVAKRTVVGEQQLTEKTEEASNSIKPIDVEQSIENPKTQAPILKEAQR
HIVTNDLVALGSLTQNVSQKTFEHNEQLDLHNQLIMGRQIENDAEDNVWI
PNLNLNQGMTMLPPDLLSFRPPVTGWKGTSDRLRQANMMAQNVSNSHSVS
TRGRAIARRRARRSSRSFR*
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mRNA from alignment at tig00000124_pilon:88482..89291-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4685.t1 ID=Ggra4685.t1|Name=Ggra4685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000124_pilon:88482..89291- (Gracilaria gracilis GNS1m male)
ATGAACCATCCTTCTCATTCCGCAGACCGAGAGCCCCCTCAAATAGGTGC
CGATGCTGCTCAAATATTAGCATCTATGGAACGCCAGCAGCGCAAAATAC
TACAAGGATTTACGACGCTACAAGAGCAAATCATTCACTCAACCTATATC
ATTTCACATTGTATGAAATCTCATTTCAAAATACTATTGCATATTGAACA
ACAGAAAGTACGTGACCGGCTAAGCGTACAACCGTCGTTGGAAGCAGCTC
ATGCCTATTTCGAAAAGCTCCAGAACTTTGGACCGGCAGCGTTATCTGGA
ATCGGGGCAGTAGCCAAAAGAACCGTCGTAGGTGAACAGCAGCTTACCGA
AAAAACAGAGGAAGCAAGCAATTCGATAAAACCAATTGACGTCGAACAAA
GCATTGAAAACCCCAAAACACAAGCCCCAATCCTTAAGGAAGCACAAAGG
CATATCGTGACGAATGATTTGGTGGCATTGGGATCGCTGACACAGAATGT
TTCCCAAAAAACCTTTGAGCACAATGAACAGTTGGACTTGCATAACCAAT
TGATTATGGGGAGGCAGATTGAAAATGACGCAGAAGATAATGTGTGGATA
CCAAATTTGAACTTGAATCAAGGTATGACAATGTTGCCACCAGATTTACT
TAGCTTTCGACCACCTGTGACAGGCTGGAAGGGAACTTCAGATCGCTTGC
GTCAAGCTAACATGATGGCGCAAAACGTTAGTAATTCGCATTCAGTATCG
ACGCGTGGTCGTGCTATTGCACGACGTCGTGCTAGACGTTCGTCGCGGTC
TTTTAGGTGA
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Coding sequence (CDS) from alignment at tig00000124_pilon:88482..89291-

>Ggra4685.t1 ID=Ggra4685.t1|Name=Ggra4685.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000124_pilon:88482..89291- (Gracilaria gracilis GNS1m male)
ATGAACCATCCTTCTCATTCCGCAGACCGAGAGCCCCCTCAAATAGGTGC
CGATGCTGCTCAAATATTAGCATCTATGGAACGCCAGCAGCGCAAAATAC
TACAAGGATTTACGACGCTACAAGAGCAAATCATTCACTCAACCTATATC
ATTTCACATTGTATGAAATCTCATTTCAAAATACTATTGCATATTGAACA
ACAGAAAGTACGTGACCGGCTAAGCGTACAACCGTCGTTGGAAGCAGCTC
ATGCCTATTTCGAAAAGCTCCAGAACTTTGGACCGGCAGCGTTATCTGGA
ATCGGGGCAGTAGCCAAAAGAACCGTCGTAGGTGAACAGCAGCTTACCGA
AAAAACAGAGGAAGCAAGCAATTCGATAAAACCAATTGACGTCGAACAAA
GCATTGAAAACCCCAAAACACAAGCCCCAATCCTTAAGGAAGCACAAAGG
CATATCGTGACGAATGATTTGGTGGCATTGGGATCGCTGACACAGAATGT
TTCCCAAAAAACCTTTGAGCACAATGAACAGTTGGACTTGCATAACCAAT
TGATTATGGGGAGGCAGATTGAAAATGACGCAGAAGATAATGTGTGGATA
CCAAATTTGAACTTGAATCAAGGTATGACAATGTTGCCACCAGATTTACT
TAGCTTTCGACCACCTGTGACAGGCTGGAAGGGAACTTCAGATCGCTTGC
GTCAAGCTAACATGATGGCGCAAAACGTTAGTAATTCGCATTCAGTATCG
ACGCGTGGTCGTGCTATTGCACGACGTCGTGCTAGACGTTCGTCGCGGTC
TTTTAGGTGA
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