Ggra4682.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4682.t1
Unique NameGgra4682.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:78043..78703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4682Ggra4682Gracilaria gracilis GNS1m malegenetig00000124_pilon 78043..78703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4682.t1Ggra4682.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 78043..78703 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4682.t1.stop1Ggra4682.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 78043..78045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4682.t1.CDS1Ggra4682.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 78043..78413 -
Ggra4682.t1.CDS2Ggra4682.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000124_pilon 78484..78703 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4682.t1.exon1Ggra4682.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 78043..78413 -
Ggra4682.t1.exon2Ggra4682.t1.exon2Gracilaria gracilis GNS1m maleexontig00000124_pilon 78484..78703 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4682.t1.intron1Ggra4682.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000124_pilon 78414..78483 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4682.t1.start1Ggra4682.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 78701..78703 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4682.t1 ID=Ggra4682.t1|Name=Ggra4682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=197bp
MMGCGKGKPLSPDKQIFCCEHFNPDYPSAGAVDVDSALTANLEREDDDGK
PEFKVHVRTLGEECKPPLYVCGVEDEVEKEEREQVRDGEDVDEEDPLPAR
KGLILEGQSLKLSDTGSQTSPETMTEGSVAGSKANDAGTMDLEEDEVAAN
IWELLSKTMGIKLSRKQIPNVREVIAGTIDERAEREEQVHETEGNS*
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spliced messenger RNA

>Ggra4682.t1 ID=Ggra4682.t1|Name=Ggra4682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000124_pilon:78043..78703- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGTTGCGGGAAGGGAAAACCACTGTCACCGGACAAACAGATTTT
TTGTTGTGAGCATTTCAATCCTGATTACCCGAGTGCAGGAGCCGTTGATG
TTGATTCTGCGCTTACGGCGAATTTGGAACGTGAAGACGATGATGGTAAA
CCAGAATTCAAAGTCCATGTGAGAACACTTGGCGAAGAGTGCAAACCGCC
ACTGTACGTTTGTGGGGTTGAGGACGAGGTCGAAAAGGAAGAAAGAGAAC
AGGTTCGTGACGGTGAGGATGTAGATGAAGAGGATCCGTTACCTGCCCGT
AAAGGTCTCATATTAGAAGGCCAGTCTCTTAAACTTTCTGACACAGGGAG
TCAAACATCCCCTGAAACCATGACAGAAGGAAGTGTCGCAGGAAGCAAAG
CAAATGACGCTGGAACTATGGATCTGGAAGAGGATGAAGTAGCTGCGAAT
ATTTGGGAGCTTCTGTCGAAGACAATGGGCATCAAGTTGAGTCGAAAACA
GATTCCTAATGTGCGGGAAGTTATTGCGGGAACTATTGATGAAAGAGCAG
AGCGTGAAGAACAAGTACACGAGACAGAGGGGAATAGTTGA
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protein sequence of Ggra4682.t1

>Ggra4682.t1 ID=Ggra4682.t1|Name=Ggra4682.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MMGCGKGKPLSPDKQIFCCEHFNPDYPSAGAVDVDSALTANLEREDDDGK
PEFKVHVRTLGEECKPPLYVCGVEDEVEKEEREQVRDGEDVDEEDPLPAR
KGLILEGQSLKLSDTGSQTSPETMTEGSVAGSKANDAGTMDLEEDEVAAN
IWELLSKTMGIKLSRKQIPNVREVIAGTIDERAEREEQVHETEGNS*
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mRNA from alignment at tig00000124_pilon:78043..78703-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4682.t1 ID=Ggra4682.t1|Name=Ggra4682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=661bp|location=Sequence derived from alignment at tig00000124_pilon:78043..78703- (Gracilaria gracilis GNS1m male)
ATGATGGGTTGCGGGAAGGGAAAACCACTGTCACCGGACAAACAGATTTT
TTGTTGTGAGCATTTCAATCCTGATTACCCGAGTGCAGGAGCCGTTGATG
TTGATTCTGCGCTTACGGCGAATTTGGAACGTGAAGACGATGATGGTAAA
CCAGAATTCAAAGTCCATGTGAGAACACTTGGCGAAGAGTGCAAACCGCC
ACTGTACGTTTGTGGGGTTGGTCTGGAATGCAAAGAAGGGTTGTGCTTTC
GAATCAAGACTAAGGCTCATCTCAAAAGAATTTTGAGAAGAGGACGAGGT
CGAAAAGGAAGAAAGAGAACAGGTTCGTGACGGTGAGGATGTAGATGAAG
AGGATCCGTTACCTGCCCGTAAAGGTCTCATATTAGAAGGCCAGTCTCTT
AAACTTTCTGACACAGGGAGTCAAACATCCCCTGAAACCATGACAGAAGG
AAGTGTCGCAGGAAGCAAAGCAAATGACGCTGGAACTATGGATCTGGAAG
AGGATGAAGTAGCTGCGAATATTTGGGAGCTTCTGTCGAAGACAATGGGC
ATCAAGTTGAGTCGAAAACAGATTCCTAATGTGCGGGAAGTTATTGCGGG
AACTATTGATGAAAGAGCAGAGCGTGAAGAACAAGTACACGAGACAGAGG
GGAATAGTTGA
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Coding sequence (CDS) from alignment at tig00000124_pilon:78043..78703-

>Ggra4682.t1 ID=Ggra4682.t1|Name=Ggra4682.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000124_pilon:78043..78703- (Gracilaria gracilis GNS1m male)
ATGATGGGTTGCGGGAAGGGAAAACCACTGTCACCGGACAAACAGATTTT
TTGTTGTGAGCATTTCAATCCTGATTACCCGAGTGCAGGAGCCGTTGATG
TTGATTCTGCGCTTACGGCGAATTTGGAACGTGAAGACGATGATGGTAAA
CCAGAATTCAAAGTCCATGTGAGAACACTTGGCGAAGAGTGCAAACCGCC
ACTGTACGTTTGTGGGGTTGAGGACGAGGTCGAAAAGGAAGAAAGAGAAC
AGGTTCGTGACGGTGAGGATGTAGATGAAGAGGATCCGTTACCTGCCCGT
AAAGGTCTCATATTAGAAGGCCAGTCTCTTAAACTTTCTGACACAGGGAG
TCAAACATCCCCTGAAACCATGACAGAAGGAAGTGTCGCAGGAAGCAAAG
CAAATGACGCTGGAACTATGGATCTGGAAGAGGATGAAGTAGCTGCGAAT
ATTTGGGAGCTTCTGTCGAAGACAATGGGCATCAAGTTGAGTCGAAAACA
GATTCCTAATGTGCGGGAAGTTATTGCGGGAACTATTGATGAAAGAGCAG
AGCGTGAAGAACAAGTACACGAGACAGAGGGGAATAGTTGA
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