Ggra4680.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4680.t1
Unique NameGgra4680.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length529
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000124_piloncontigtig00000124_pilon:74117..75799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007512023.1
PFAMsVps51
Max annot lvl3041|Chlorophyta
KEGG koko:K20288
Evalue2.68e-13
EggNOG OGsKOG2033@1|root,KOG2033@2759|Eukaryota,37Q61@33090|Viridiplantae,34HYZ@3041|Chlorophyta
DescriptionConserved oligomeric Golgi complex subunit
COG categoryI
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4680Ggra4680Gracilaria gracilis GNS1m malegenetig00000124_pilon 74117..75799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4680.t1Ggra4680.t1Gracilaria gracilis GNS1m malepolypeptidetig00000124_pilon 74117..75799 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4680.t1.start1Ggra4680.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000124_pilon 74117..74119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4680.t1.CDS1Ggra4680.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000124_pilon 74117..74569 +
Ggra4680.t1.CDS2Ggra4680.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000124_pilon 74666..75799 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4680.t1.exon1Ggra4680.t1.exon1Gracilaria gracilis GNS1m maleexontig00000124_pilon 74117..74569 +
Ggra4680.t1.exon2Ggra4680.t1.exon2Gracilaria gracilis GNS1m maleexontig00000124_pilon 74666..75799 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4680.t1.intron1Ggra4680.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000124_pilon 74570..74665 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4680.t1.stop1Ggra4680.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000124_pilon 75797..75799 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4680.t1 ID=Ggra4680.t1|Name=Ggra4680.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=529bp
MAKPQARASHVVLTTGSVSSEVTHLFRTKRVSDIRAFEAQIRSDAEDKSN
ALRDLLGTRYRDILTAADEMIAMRNASVRRVRDGLRDFTVSTNGLKQHFA
SKGNENQSETINDDLEPRRGVHAVGSRLKHIVDSPEVLYANIESGEIYEA
AQVNGFRDQILEAAEKKLQTSGHTSQEYARVFVSLILLSENRDIVAILDG
MLASRTGLIWNEDQGKQYSDVYLQMKRIASLVRETISCVSDMFWGENGAQ
TLLLGVNDQAIEEVSRLKDNGALSIACTAWTRNVRGWLEERGNSILASAE
TSRQIADTLRAIDDAFDYDQWESDCHKALKKSPSFVFDIFKPFIRDRAGV
VARECIERTVNKVLEDIEGAWGDIETRAHAGKKIWAVISGKSVGPSIITQ
ETSSSGSQRSESMEIAQILSSNGQVAEALGTFDKSVREAVADVQVLTKRI
PAVSEDFVRSVRSSLPRILSSLKERLGSIPTDASSDRLRKDESSYHVFGC
TLFVAWLSTAFRNAEGVRRAYQFAKYGK*
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spliced messenger RNA

>Ggra4680.t1 ID=Ggra4680.t1|Name=Ggra4680.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000124_pilon:74117..75799+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAGCCTCAGGCCCGCGCTTCGCACGTAGTGCTCACAACGGGCTC
GGTTTCATCTGAGGTAACTCATCTGTTCCGTACGAAGCGAGTGTCAGACA
TTCGGGCATTTGAAGCCCAAATTCGAAGCGATGCTGAAGACAAGTCTAAC
GCACTCCGGGACCTGCTCGGTACAAGGTACAGAGATATTCTTACCGCTGC
GGATGAAATGATCGCAATGCGTAACGCGAGTGTCAGGAGAGTGCGCGATG
GTCTGCGAGATTTCACAGTATCTACGAACGGGCTTAAGCAACACTTCGCC
AGCAAAGGAAATGAAAACCAGTCTGAGACTATAAACGATGACCTGGAGCC
GCGAAGGGGCGTGCATGCTGTCGGATCAAGACTCAAGCATATTGTGGACT
CTCCAGAAGTATTGTACGCCAACATCGAATCTGGGGAGATTTACGAAGCA
GCTCAAGTGAACGGTTTTAGGGATCAGATTTTGGAAGCAGCAGAGAAGAA
GCTTCAAACCTCTGGTCATACATCTCAAGAGTATGCACGCGTGTTTGTGT
CTCTTATCCTTCTCTCGGAAAATCGTGACATCGTGGCCATTCTCGACGGA
ATGTTGGCGAGTAGAACTGGATTGATTTGGAATGAGGATCAAGGGAAACA
GTATTCCGATGTTTATTTGCAAATGAAACGAATAGCTTCTCTTGTACGTG
AAACTATCTCATGCGTGTCCGACATGTTTTGGGGGGAAAACGGTGCCCAA
ACTCTGTTGCTCGGTGTTAACGACCAAGCCATAGAGGAAGTTTCCAGACT
GAAAGATAATGGTGCCTTAAGCATCGCATGTACCGCTTGGACCCGAAATG
TAAGGGGTTGGTTGGAGGAACGCGGCAACTCAATTCTTGCGAGCGCTGAG
ACGTCTCGCCAGATTGCAGATACTTTACGTGCGATCGATGATGCCTTCGA
TTACGATCAATGGGAAAGTGACTGTCACAAAGCCTTGAAAAAGTCTCCAA
GTTTTGTGTTTGACATATTTAAGCCCTTTATTAGAGACAGAGCTGGGGTT
GTTGCACGAGAATGTATAGAACGAACAGTGAACAAAGTCTTGGAAGATAT
CGAAGGGGCCTGGGGTGACATTGAAACCCGTGCTCATGCGGGAAAAAAAA
TTTGGGCGGTCATCTCAGGGAAATCGGTAGGTCCAAGCATCATCACACAG
GAAACGAGTAGTAGTGGGTCTCAGAGGTCGGAAAGTATGGAGATAGCTCA
AATTCTTTCGTCTAACGGACAGGTCGCAGAAGCGCTTGGTACCTTTGATA
AGTCTGTGAGGGAGGCAGTTGCAGATGTCCAAGTTCTAACAAAACGAATA
CCTGCTGTTTCTGAAGACTTTGTCCGATCAGTGAGGTCAAGTCTTCCACG
AATTTTAAGCAGTCTGAAGGAGCGGCTAGGTTCTATCCCCACTGATGCAT
CAAGTGATCGTCTAAGGAAAGATGAGTCATCTTATCATGTTTTTGGATGT
ACTCTGTTTGTGGCTTGGTTATCTACCGCATTTAGAAATGCTGAAGGCGT
GAGAAGAGCATACCAATTTGCTAAATATGGCAAGTGA
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protein sequence of Ggra4680.t1

>Ggra4680.t1 ID=Ggra4680.t1|Name=Ggra4680.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=529bp
MAKPQARASHVVLTTGSVSSEVTHLFRTKRVSDIRAFEAQIRSDAEDKSN
ALRDLLGTRYRDILTAADEMIAMRNASVRRVRDGLRDFTVSTNGLKQHFA
SKGNENQSETINDDLEPRRGVHAVGSRLKHIVDSPEVLYANIESGEIYEA
AQVNGFRDQILEAAEKKLQTSGHTSQEYARVFVSLILLSENRDIVAILDG
MLASRTGLIWNEDQGKQYSDVYLQMKRIASLVRETISCVSDMFWGENGAQ
TLLLGVNDQAIEEVSRLKDNGALSIACTAWTRNVRGWLEERGNSILASAE
TSRQIADTLRAIDDAFDYDQWESDCHKALKKSPSFVFDIFKPFIRDRAGV
VARECIERTVNKVLEDIEGAWGDIETRAHAGKKIWAVISGKSVGPSIITQ
ETSSSGSQRSESMEIAQILSSNGQVAEALGTFDKSVREAVADVQVLTKRI
PAVSEDFVRSVRSSLPRILSSLKERLGSIPTDASSDRLRKDESSYHVFGC
TLFVAWLSTAFRNAEGVRRAYQFAKYGK*
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mRNA from alignment at tig00000124_pilon:74117..75799+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4680.t1 ID=Ggra4680.t1|Name=Ggra4680.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1683bp|location=Sequence derived from alignment at tig00000124_pilon:74117..75799+ (Gracilaria gracilis GNS1m male)
ATGGCAAAGCCTCAGGCCCGCGCTTCGCACGTAGTGCTCACAACGGGCTC
GGTTTCATCTGAGGTAACTCATCTGTTCCGTACGAAGCGAGTGTCAGACA
TTCGGGCATTTGAAGCCCAAATTCGAAGCGATGCTGAAGACAAGTCTAAC
GCACTCCGGGACCTGCTCGGTACAAGGTACAGAGATATTCTTACCGCTGC
GGATGAAATGATCGCAATGCGTAACGCGAGTGTCAGGAGAGTGCGCGATG
GTCTGCGAGATTTCACAGTATCTACGAACGGGCTTAAGCAACACTTCGCC
AGCAAAGGAAATGAAAACCAGTCTGAGACTATAAACGATGACCTGGAGCC
GCGAAGGGGCGTGCATGCTGTCGGATCAAGACTCAAGCATATTGTGGACT
CTCCAGAAGTATTGTACGCCAACATCGAATCTGGGGAGATTTACGAAGCA
GCTGTGCGATAATCGCTAGCGTTTGAAAATTATAAACAGGTGACGAGTAC
GTCTGGATTGGAAGGAGTGGCAAATAGGTTTGCCGAACTCCAATGGAAGC
AAGTGAACGGTTTTAGGGATCAGATTTTGGAAGCAGCAGAGAAGAAGCTT
CAAACCTCTGGTCATACATCTCAAGAGTATGCACGCGTGTTTGTGTCTCT
TATCCTTCTCTCGGAAAATCGTGACATCGTGGCCATTCTCGACGGAATGT
TGGCGAGTAGAACTGGATTGATTTGGAATGAGGATCAAGGGAAACAGTAT
TCCGATGTTTATTTGCAAATGAAACGAATAGCTTCTCTTGTACGTGAAAC
TATCTCATGCGTGTCCGACATGTTTTGGGGGGAAAACGGTGCCCAAACTC
TGTTGCTCGGTGTTAACGACCAAGCCATAGAGGAAGTTTCCAGACTGAAA
GATAATGGTGCCTTAAGCATCGCATGTACCGCTTGGACCCGAAATGTAAG
GGGTTGGTTGGAGGAACGCGGCAACTCAATTCTTGCGAGCGCTGAGACGT
CTCGCCAGATTGCAGATACTTTACGTGCGATCGATGATGCCTTCGATTAC
GATCAATGGGAAAGTGACTGTCACAAAGCCTTGAAAAAGTCTCCAAGTTT
TGTGTTTGACATATTTAAGCCCTTTATTAGAGACAGAGCTGGGGTTGTTG
CACGAGAATGTATAGAACGAACAGTGAACAAAGTCTTGGAAGATATCGAA
GGGGCCTGGGGTGACATTGAAACCCGTGCTCATGCGGGAAAAAAAATTTG
GGCGGTCATCTCAGGGAAATCGGTAGGTCCAAGCATCATCACACAGGAAA
CGAGTAGTAGTGGGTCTCAGAGGTCGGAAAGTATGGAGATAGCTCAAATT
CTTTCGTCTAACGGACAGGTCGCAGAAGCGCTTGGTACCTTTGATAAGTC
TGTGAGGGAGGCAGTTGCAGATGTCCAAGTTCTAACAAAACGAATACCTG
CTGTTTCTGAAGACTTTGTCCGATCAGTGAGGTCAAGTCTTCCACGAATT
TTAAGCAGTCTGAAGGAGCGGCTAGGTTCTATCCCCACTGATGCATCAAG
TGATCGTCTAAGGAAAGATGAGTCATCTTATCATGTTTTTGGATGTACTC
TGTTTGTGGCTTGGTTATCTACCGCATTTAGAAATGCTGAAGGCGTGAGA
AGAGCATACCAATTTGCTAAATATGGCAAGTGA
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Coding sequence (CDS) from alignment at tig00000124_pilon:74117..75799+

>Ggra4680.t1 ID=Ggra4680.t1|Name=Ggra4680.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1587bp|location=Sequence derived from alignment at tig00000124_pilon:74117..75799+ (Gracilaria gracilis GNS1m male)
ATGGCAAAGCCTCAGGCCCGCGCTTCGCACGTAGTGCTCACAACGGGCTC
GGTTTCATCTGAGGTAACTCATCTGTTCCGTACGAAGCGAGTGTCAGACA
TTCGGGCATTTGAAGCCCAAATTCGAAGCGATGCTGAAGACAAGTCTAAC
GCACTCCGGGACCTGCTCGGTACAAGGTACAGAGATATTCTTACCGCTGC
GGATGAAATGATCGCAATGCGTAACGCGAGTGTCAGGAGAGTGCGCGATG
GTCTGCGAGATTTCACAGTATCTACGAACGGGCTTAAGCAACACTTCGCC
AGCAAAGGAAATGAAAACCAGTCTGAGACTATAAACGATGACCTGGAGCC
GCGAAGGGGCGTGCATGCTGTCGGATCAAGACTCAAGCATATTGTGGACT
CTCCAGAAGTATTGTACGCCAACATCGAATCTGGGGAGATTTACGAAGCA
GCTCAAGTGAACGGTTTTAGGGATCAGATTTTGGAAGCAGCAGAGAAGAA
GCTTCAAACCTCTGGTCATACATCTCAAGAGTATGCACGCGTGTTTGTGT
CTCTTATCCTTCTCTCGGAAAATCGTGACATCGTGGCCATTCTCGACGGA
ATGTTGGCGAGTAGAACTGGATTGATTTGGAATGAGGATCAAGGGAAACA
GTATTCCGATGTTTATTTGCAAATGAAACGAATAGCTTCTCTTGTACGTG
AAACTATCTCATGCGTGTCCGACATGTTTTGGGGGGAAAACGGTGCCCAA
ACTCTGTTGCTCGGTGTTAACGACCAAGCCATAGAGGAAGTTTCCAGACT
GAAAGATAATGGTGCCTTAAGCATCGCATGTACCGCTTGGACCCGAAATG
TAAGGGGTTGGTTGGAGGAACGCGGCAACTCAATTCTTGCGAGCGCTGAG
ACGTCTCGCCAGATTGCAGATACTTTACGTGCGATCGATGATGCCTTCGA
TTACGATCAATGGGAAAGTGACTGTCACAAAGCCTTGAAAAAGTCTCCAA
GTTTTGTGTTTGACATATTTAAGCCCTTTATTAGAGACAGAGCTGGGGTT
GTTGCACGAGAATGTATAGAACGAACAGTGAACAAAGTCTTGGAAGATAT
CGAAGGGGCCTGGGGTGACATTGAAACCCGTGCTCATGCGGGAAAAAAAA
TTTGGGCGGTCATCTCAGGGAAATCGGTAGGTCCAAGCATCATCACACAG
GAAACGAGTAGTAGTGGGTCTCAGAGGTCGGAAAGTATGGAGATAGCTCA
AATTCTTTCGTCTAACGGACAGGTCGCAGAAGCGCTTGGTACCTTTGATA
AGTCTGTGAGGGAGGCAGTTGCAGATGTCCAAGTTCTAACAAAACGAATA
CCTGCTGTTTCTGAAGACTTTGTCCGATCAGTGAGGTCAAGTCTTCCACG
AATTTTAAGCAGTCTGAAGGAGCGGCTAGGTTCTATCCCCACTGATGCAT
CAAGTGATCGTCTAAGGAAAGATGAGTCATCTTATCATGTTTTTGGATGT
ACTCTGTTTGTGGCTTGGTTATCTACCGCATTTAGAAATGCTGAAGGCGT
GAGAAGAGCATACCAATTTGCTAAATATGGCAAGTGA
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